AMCG00003581 (ralgapa2)


Basic Information

Item Value
gene id AMCG00003581
gene name ralgapa2
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 10506558 ~ 10532085 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003581
GACGTGCTGAACACAGTCATCAGGCACTGCTCCCCACGGTTCTTCTTTCTCGCCCTACCTGGCTTCACCATGCTGGTGGGCGACTTCATCACAGCTGCCGCCCGGGTCCTCAGCACCGAGGTGCTGGAGGCCCCTCGGATCGAAGCACAGACTGTTCTCGGATCTTTAGTGTGCTTTCCCAGCCTTTACCAACAGATGCCCTTACTGCAGACAGTTCCAGGAACCTCTGATATCATCGTAGGGAACGAGGACATTAAGGACTATTTGATCAACATATTACTGAAGATTGCAAGGAATGAGCCCAGTGAGGGTGCAAGTCTTGGTGTCTGGATCTGTGAAGAACTAGTGCAGCAATCCAATCACCCGCAGGTTAAAGATGCAATAAACGTCATTGGGGTAACACTGAAGTTTTCCAATAAAGCGGTGGCCCACGTAGCCTGTGATGTGTTCCAGCTTCTGATCTGTCACTGGCAAAACCTACAGAGATACGAATCCTCTCTTCCAAAGAAAATCACTGAAatTTTTGTGGCCACAATAGCATTCCTTCTGCCGAGTGCGGAACATTCTACCATGGAAGCTGACAAAAAGCTAATGGTATCACTGCTCCTCTGCCTGCTGGATTGGTGCATAGCAATACCTCTGAACACACTGCTGGAGCCTATTACCATGCCTGTGCTCGAAGATCCTTCCTCACAAAAAGCCCCTCTGTTGGACTATATTTACAGAGTGCTGCACTGTTGCGTTTATGGGTCTAACCTCCACACCCAGCAAAGCCATTATCTTCTCAGTCTAGCTGACCTGTCGGCTACAGACTACGACCCTTTCCTGGCTCTGGGAAACGTCAAAAACTCAGAGCCACTGCAGTCTCACTCCACGGTGGATTTTGGCAACCTGCTCACGGTGGCGGAGGagAAAAGGCGAAGGAATATGGAACTGATTCCTCTGACTGCTCGCATGATCATGACCCACCTGGTGAACCACTTGGGCCACCATCCTCTCAGTGGAGGTCCTGCTGTCCTTCACAGTCTCATCAGCGAGAACCACGACAACCATTATGTGGAGTCCTCCGAGCTGTCCTCCGAAGTCTTCAAGAGCCCCAACCTGCAGCTCTTTGTGTTCAACGACAGCACTCTTGTTTCCTATCTGCAGATCCCGGCGGAAAGGACTGGAACTGGTGAGCCACCGATGGCTTCTTCGGATGTCCGGGTCATCGTGAGGGACATCTCAGGGAAGTACTCTTGGGATGGTAATGTTCTGTATAAGCCTTTAGATGGACATGTCTCCAGTCATGACGGCAACCACAAAACCACAATGCATTTTGAGAGTCCCTGTAGGGGAGACCAAGTGAACTCATCTGGTTGGGATTCTCTTGACACTGAAGAAGGGCGAGATGTGTTGGACGAGCTCCTGGAGAGTCTTGGACACAGCAGTCCTGAATGCCTCCCGCAGCCCCAGCTGAAGCTCAATGTTCCGGCTCCTTCACCGTTCGGTATGAACTTAGACCAAGAAAATGCCATTATTGAGACCATCTTAAAGCAGACCATCCAAGAGGAGGAACATGTTAAGAGATGGAATAAGGACTTCAGCATGAAAGTAGCTAGTCAGGAAGAACCAACTCATCAAGAGCCCAAAGCTCCTTTCTATTTCTGCCGGCTGCTGTTGAACGACCTGGGGATGAATTCTTGGGATCGAAGgaaaAGTTTTCATCTGCTGAAGAAGAACTCCAAGCTCTTAAGAGAACTTAAAAACTTGGATTCAAGGCAGTGCAGAGAAACCCACAAGATTGCTGTTTTTTATATCGGCGACGGGCAGGAAGATAAATGCTCCATTTTGTCAAACACAGAAGGCAGCCAGGCATATGAGGATTTTGTCTCTGGACTTGGCTGGGAgGTGGATCTGGCCACGCACTGCGGCTTCATGGGCGGCCTGCAGAGGAACGGCAGCACGGGCCACACCGCCCCTTACTATGCTACCTCTACTGTGGAGGTCATCTTCCACGTGTCCACGAGGATGCCCTCCGACTCGGATGACTCTCTGACAAAAAAGCTTCGTCACCTGGGAAATGATGAGGTTCACATCGTCTGGTCTGAGCACACGAGAGACTATCGCAAGGGCATTATACCCACAGATTTCGGGGACgtgttaattattgtttatcCAATGAAGAATCACATGTTCTTCATCCAGATCATGAAGAAACCACAGGTCCCTTTCTTCGGTCCTCTGTTTGATGGAGCCATTGTAACGGGGACCCTGTTGCCAAGTTTAGTGCGTGCCACTTGTATCAATGCCAGCCGAGCTGTGAAATCCCGCCTGACACTCTACCAGAGCTTGTATCCTTTTTCCACATACAATAAT

Function

symbol description
ralgapa2 Predicted to enable GTPase activator activity. Predicted to act upstream of or within positive regulation of GTPase activity and regulation of small GTPase mediated signal transduction. Predicted to be located in nucleus. Predicted to be active in cytoplasm. Orthologous to human RALGAPA2 (Ral GTPase activating protein catalytic subunit alpha 2).

NR:

description
PREDICTED: ral GTPase-activating protein subunit alpha-2 isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003581 True 2358 mRNA 0.50 14 10506558 10532085

Neighbor

gene id symbol gene type direction distance location
AMCG00003580 NA coding upstream 10638 10475837 ~ 10495920 (+)
AMCG00003576 nkx2.1a,LOC105015794,LOC106610802,LOC102798947,LOC108428605,LOC100709876,LOC101467433 coding upstream 274887 10230121 ~ 10231671 (+)
AMCG00003575 nkx2.2a,LOC103359019,LOC101157822,LOC101466937,LOC107392558 coding upstream 324598 10179342 ~ 10181960 (+)
AMCG00003571 foxa2,LOC105909438 coding upstream 611570 9892778 ~ 9894988 (+)
AMCG00003568 LOC104960473 coding upstream 630715 9866100 ~ 9875843 (+)
AMCG00003583 crnkl1,LOC106607683,LOC106571265 coding downstream 85472 10617557 ~ 10623372 (+)
AMCG00003590 NA coding downstream 97488 10629573 ~ 10631480 (+)
AMCG00003585 NA coding downstream 104403 10636488 ~ 10657573 (+)
AMCG00003591 NA coding downstream 493124 11025209 ~ 11048576 (+)
AMCG00003594 LOC106565365,LOC106610693 coding downstream 552078 11084163 ~ 11098960 (+)
G1747 ralgapa2 non-coding upstream 48793 10431664 ~ 10457765 (+)
G1706 NA non-coding upstream 268297 10236856 ~ 10238261 (+)
G1574 NA non-coding upstream 803080 9700557 ~ 9703478 (+)
G1430 ywhaqb,ywhaq,LOC105896734,LOC108436740,LOC107733143,LOC107674035,LOC107752793 non-coding upstream 1478926 9009297 ~ 9027632 (+)
G1375 NA non-coding upstream 1662476 8843827 ~ 8844082 (+)
G1855 NA non-coding downstream 518066 11050151 ~ 11050644 (+)
G1891 NA non-coding downstream 695874 11227959 ~ 11228275 (+)
G1902 NA non-coding downstream 798954 11331039 ~ 11403029 (+)
G1987 NA non-coding downstream 1037967 11570052 ~ 11570410 (+)
G2018 NA non-coding downstream 1281037 11813122 ~ 11831420 (+)
AMCG00003570 NA other upstream 724802 9777508 ~ 9781756 (+)
AMCG00003551 NA other upstream 1243090 9255828 ~ 9263468 (+)
AMCG00003544 NA other upstream 1399793 9075890 ~ 9106765 (+)
AMCG00003541 asap2,LOC106566627 other upstream 1564807 8900456 ~ 8941751 (+)
AMCG00003534 id2,LOC106566577 other upstream 1854088 8649125 ~ 8652470 (+)
AMCG00003604 NA other downstream 929578 11461663 ~ 11482931 (+)
AMCG00003606 NA other downstream 958100 11490185 ~ 11491597 (+)
G1989 cnr1,LOC104936193 other downstream 1041646 11573731 ~ 11577329 (+)
AMCG00003614 NA other downstream 1192998 11725083 ~ 11729991 (+)
AMCG00003643 kif25,LOC100703631,LOC102203072 other downstream 2370481 12902566 ~ 12917002 (+)

Expression


Co-expression Network