AMCG00004314


Basic Information

Item Value
gene id AMCG00004314
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 42548340 ~ 42576558 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004314
TGCGTTCTGACCTCTACTCCTCAGAGGCCGCAATTACACTGGACTAACTTTCATGCTGTAGCTGTCTTTTCCACTGCCTGGGCTCTCTGCCTTCCTGTCCTGCTTTCACCGTCCCATTTGGATTTAAGTTGCTGCCTTCAGACCCCCTATGTGATGCAAAGAGACAAAGAGCTGCAGAGAAGTGCTCtgtgagtctttttttttacttcagagaAACTCAACCTCAAGTATTGGCAACAagtgtcaaacaaaacagaaaaaagaaaagggctGCTGTTCCACAGACGAAGGATTCCTGCAGGGCCACAACACTGCTTATGCGTTGTCCCAAAAAGGATTAGCAAAGATAAGAGGAGCCCACATTATTCCACCCTAGAGATATTTCACAACCAAAGGAATTACCTTTGAAATAAACGCATCAAAAACACCATGACTGAGCTCACTGCTGAAGGGCGACCATCGGCCACCACCACCGCTGTGATAGACAGCAAGAATGGCAGCATCCTCCAATCATCTATCAAGTCGCCAAAGAAATCAGTGACCGAAGACTTAGCATCAACGTTCAGCTCCCCTACTGCATGGCTTCTGGTCATTGCTCTGATAGTCACCTGGTCCGCCGTGGCTGTCATCATGTTTGACTTGATTGATTGCAGGGGATATGTTGGCCGTGTGCACATGCTCAGCTCTGATCCCATGAAACTCATAGATGAGGCAGTGGAGGAATCCACTGACTGGGTTTATGGAGTCATGTCCTTACTGTCTGACATGATATCGCCAGACGACGACGATGATGATGACGACGAAGGTGAAGCTCATCCAGCCAAGCGGAAAGtgattAAAAAGGTCAAAGAAACTAAAGAAAGGAAAgtaagagaagagaagaaagcaGCACCCAAAGAGACACGGAAAGCTAAAGTTGCCAAAGTagaagaaaagataaaaaagccTGAGAAACTGCTCAAGAAAGCAGAGAAACCCAAGAAAGAAGTGAAAGCAGTGGAAAAAGCACAGCCTAAGGCCAAGCCAAAGGGAGAGAAGCCTGCGAAGACAGAGTCGAAAGATCAGTTTGAGTTCTGTCGCTATGTGGTTGACATGTATACACATGAGGATGTTTCTGCAGGTACTTTGAAAAGCCTTGTGTTGCTGTCTAATAGTACTTGTTTGAAGTTTCTTCCCTCATATGCTTAACAATGCTTCAAGCTGATGTCAAGTCTGAATAAACTAGCATAGGAATCAGAGCCAAGAGAAAgtaatgacatttttattactgttgCATGAGTGCCAGgatgctttaaaatgcagtatcattttacagaaaagaaagaatttCAAGATTAATTATATCTTTGATCAAATGCCCTTGCAACAAAAAAGCACAAGTGAAACAGTTTTCTTTAAAGCTCTCGATTGACGTAAAGTAGACAGCTCCCAGGACCAGCAGAAAATCTCTGCAGTGACATCAAAATGGATTACTCTTGATGTAAAGGTACAATCTTATGTAATGCACCGTGTTCCTGAGCTGTTGTTTTCAGATATCACTGTGGAAAAGGCTTTCTTGTAATTTGTGTCATAATTATTTAGACACACAGAAGGAAATTTACACCAAATAagacagtattttatttatgctggAAAAGTTATATTTGAGGGGATATAGAaatccaaataataaaaaacccAAAGACAGCGGTTAAATGCTCTTAGTTTGTAATGCCTGTTTTGCAATGTTATTTGACAAAGCTGAGGCGAGTGTATGAGGGAATAAACGGAAAACGCATCTGTAGTAATGTATATAGAATGAGggatgtttaattatttaatttgaataatacactttaatacttCAAATTAATCATTTGAGCTTTGGCTGTAAAGTCAGTAACTAAAAGtacataaattacagtaattattataatgtgtggCCTTAACTGACAGTTTGACTTTTCTTGCGTATGTAAATCATAACATCTTCCTGTTGAATCCCCCACGTTTATTAATAAGATCTTACTTGCATGTTTTTTCATCCTTCATGCCTCCTCCTCAGTTTGCTTCCCGGAGGATCTGAGGATATGTTTAACCAGTTCTTCCACTTTAGACAGTCAGTGCTGACACACACTATTGAACTACACTTTTCAACGAGTAGCCTCCTGTGTACGTGACACCTTTCTGCAAGTCACTATTTATAGGATTGTGCAGTGTCTTGTGAATGAGACCGTTCACACTGGGATCTCTCTCAGGGTTTCGTTCTCCGTGGTCTAGTTATGTTTTGAGGAAATCTTGCTTGGGAAATCAACCTTTATAAATCCATGGTTCTTTTGTTAAGCATATGAAATTTCCACAGCTTTTATGAAGAACACTGTTATCATCAGATAAATGCTGTGGTGAAACAGGacatggggaaaaaagcagctcatgatataataattaatgactTTATATCCTAGTTAGGATAATATATTCCAGTCACAACGCTGCATCagataatgaaaatacaaagtGCATACACTTCATCTCTCTTCTATATGAATGTGtgtcaaattacatttacaaaatccaTTAATTATGCTTTTATCGGTTTCAAATGCCAGTTCAGGCAGAGATAGCACCCCGGTTCATAGTAACTGCTGAAGCACATAATCAGATCTTTGTGtgtagaaaaatgtattcacgTGAATACATCAAAAGGGTTAGGGACAGCTAAAGCACACAAACTTCCTAAATTATTTTTGAGGTGTTcatgaagtaaaaaaaacagatcagtaTTATCCATAAAGTGACCTTGGCTTATCCAGCCAAATACAGGACTGTGAATGCAGAGCATGAAACACTTCACAGCAAATATCAACGAattcaatgtaatgtataattCCTCAAACTGGCAATGCTTATACAcctaaattataatgtattgaaTCATCTAATGACAGGAGGCTAGCTAATCTTTATGGTTGGGTTCCCaccagagcaaaacaaaacttcaaCCCCCTGCCAATCCCAGAGTACAGCCTGTGTACTAGATACATTTCAACTGAGCAGAGGgaaaaaacatctggaaaaaCAGACTTGTGATTTGGGATTGGTATTTCAGTTAAAGTATCGATTTAATCAGGCCATCAGTTTGGATGAAAGGACTTTGAAGGTTTGCCTTTCTCCTAACTAACTGCCGCTAACTCTGCCTGTTTCACACAGACCTGTGTGAATATATCCTAAGGTGTAGACCAGTTAGTCGTAATTGATTTGGGGttgaaattcaaataaatttgACTAGGGATGTTTTCATGCAAAAGTAAGATCGCCTCAGCTGCCAAGGCATGGTGTCGTATTAATGTGTGTTTACCCCATCATACATCAACCCCCACAGAAAGGTTAACAAATGACTAAACATGATCAGTCATGCTTAGATACTTTGAGAAAGAAGAATGCTTACTAGTTAAAACTACCACTTGAAATTACTTTGCTATGTTGTTCACATTAATATGCAGTGTTATTCTGGGGTGCTGCAAACCTCTGGCAAGTCTCAGCTCCTTATTAAGATGAGTTCCTCTGCATGTGCTGGCACATTGAACCAGGCAATCTGTCACTATTTTCCATGGGTAGCATAATTCAAACGTGTTTACGATAGTTCATGTTGCAGCTGTAGAAGTACAACAAATGAAAACCTAGAGGACTGTACAGGGTTGATCTGAAACACATGCGCCAATTTTAGTTTCAGATCTTATCATCATTcgatttacttttatttacatgtttagtCTTTTCATTGTTGAATACCTGCTGTGATTGCTCTTgatttccagcaggacaattgTCCAATTAAACTGTGATGTTGAGGGTGAACTGGCTCTGTAATAACAGAGGATTTGTCTGTACAGCTCGAGGATCTTTACTTTAAGATAAACTTTCAGATAATGCAAAACCTGAAGAAAAAATGTACGTCTTTCAAGTAAATTCGCTGAGAAAGGTTATTAATCCAGTCATAAGTTCCTCGGAAATTAAGACACGgtactaaaacaaacatgtctaTCTAATGACAGGACTGGAGATGCACATGTTATCTGATACTTTGTTAACTGTGTTGATTTGTGAATACCTCCTGCACTGAGTTcttagtgtatgtatgtatcttaaTTTGGTTTGTAATGTTGTATTGTCGTAAGAAACTACATTTGTTTGCCtgtaatcaatcaataaaactTTGACATGAACATGA

Function

GO: NA

KEGG:

id description
K23449 TRDN; triadin

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004314 True 4210 mRNA 0.39 7 42548340 42576558

Neighbor

gene id symbol gene type direction distance location
AMCG00004308 acat2,LOC107696107,LOC107726488,LOC107732634,LOC107601581,LOC107693222,LOC107549121,LOC102788057 coding upstream 192940 42350231 ~ 42355400 (+)
AMCG00004309 wtap,LOC105015380,LOC100196682 coding upstream 201258 42338514 ~ 42347082 (+)
AMCG00004305 NA coding upstream 288599 42220020 ~ 42259741 (+)
AMCG00004303 NA coding upstream 450018 42089871 ~ 42098322 (+)
AMCG00004300 NA coding upstream 464498 42069528 ~ 42083842 (+)
AMCG00004315 NA coding downstream 15308 42591866 ~ 42634968 (+)
AMCG00004318 serinc1,LOC107598085,LOC107716862,LOC107675084 coding downstream 156258 42732816 ~ 42736569 (+)
AMCG00004321 NA coding downstream 350510 42927068 ~ 42975785 (+)
AMCG00004326 NA coding downstream 537126 43113684 ~ 43114271 (+)
AMCG00004328 man1a1,LOC107833082,LOC106959811,LOC103360425,LOC107083523 coding downstream 580510 43157068 ~ 43177059 (+)
G7293 NA non-coding upstream 72454 42475576 ~ 42475886 (+)
G7288 NA non-coding upstream 168379 42376625 ~ 42379961 (+)
G7278 NA non-coding upstream 182686 42364868 ~ 42365654 (+)
G7272 sod2,LOC102787761 non-coding upstream 211697 42333425 ~ 42336643 (+)
G7231 NA non-coding upstream 458687 42087791 ~ 42089653 (+)
G7418 NA non-coding downstream 659260 43235818 ~ 43237653 (+)
G7441 NA non-coding downstream 769792 43346350 ~ 43346959 (+)
G7485 NA non-coding downstream 1015192 43591750 ~ 43595078 (+)
G7569 pvrl1b,nectin1,LOC107563312,LOC107758086,LOC107691861,LOC107670612,LOC107561861 non-coding downstream 1501787 44078345 ~ 44088037 (+)
G7584 NA non-coding downstream 1759893 44336451 ~ 44336681 (+)
AMCG00004304 NA other upstream 331978 42210430 ~ 42216362 (+)
G7094 NA other upstream 1041109 41459576 ~ 41507231 (+)
AMCG00004257 dusp10,LOC106607590 other upstream 2207105 40326410 ~ 40341235 (+)
AMCG00004210 fam49a,znf395,LOC108440968,LOC106571599,LOC107696187,LOC107553485,LOC106608122 other upstream 4700620 37832623 ~ 37847720 (+)
G6369 NA other upstream 5548182 36999357 ~ 37000158 (+)
G7329 fabp7,LOC108247051,LOC104945778 other downstream 112221 42688779 ~ 42691109 (+)
AMCG00004355 hyou1,LOC100380749 other downstream 2041627 44618185 ~ 44640732 (+)
AMCG00004380 NA other downstream 3385452 45962010 ~ 45968306 (+)
G7999 NA other downstream 5570330 48146888 ~ 48147156 (+)
AMCG00004421 NA other downstream 6320559 48897117 ~ 49026355 (+)

Expression


Co-expression Network