AMCG00004318 (serinc1,LOC107598085,LOC107716862,LOC107675084)


Basic Information

Item Value
gene id AMCG00004318
gene name serinc1,LOC107598085,LOC107716862,LOC107675084
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 42732816 ~ 42736569 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004318
ATGCAGCtaatttgttgctttgttttttctcagaTTCCTTGTCTGTGTGGCAGTGCACCCTGCCTGTTGTGCAGCTGCTGTCCAAGTGGAAACAACTCCACTGTCACTCGCCTCATCTATGCCTTCTTCCTCCTGCTGGGCGTAGGGGTGGCTTGTATAATGCTGATGCCAGGGATGGAGGAACAACTAAagaagATTCCTGGCTTCTGTGAAGGGGGAATGGGAACTTCTCTCCCAGGCATCCATGGCCACGTCAATTGCGATGTTCTCGTGGGCTACAAGGCCGTCTACCGTGTGTGCTTTGGCATGGCCATGTTCTTCCTGCTCTTTTCGCTGGTGATGATCAAAGTGAAGAGCAGTCAGGATCCAAGAGCCGCAGTCCATAATGGGTTTTGGTTCTTCAAGTTCGCAGCAGCCACAGCCATCTCGGTTGGAGCATTCTTCATTCCCGAGGGCCCTTTTACCACAGTGTGGTTCTATGTTGGCATGGGTGGCGCTTTCTGCTTCATCCTGATCCAGCTGGTGCTGCTGATTGACTTTGCCCACTCCTGGAACGAGTCCTGGGTGGAGAGGATGGAGGAAGGCAACTCCAGGTGCTGGTATGCAGCTCTTCTCTCGGCCACAACTCTGAACTACATCCTTTCCATGGTTTCCCTGGTCCTGTTCTACGTGTACTACACCCACTCTGATGGCTGCACTGAAAATAAAGCTTTCATCAGTGTCAACATGCTGCTGTGCGTTGGAGCTTCTGTGATGTCTATCTTGCCTAAAATCCAGgaGTCTCAGCCACGGTCTGGGTTGCTGCAGTCCTCCATTGTTACCCTTTACACCATGTATTTGACCTGGTCTGCCATGACTAATGAACCAGacCGAAAGTGCAATCCGAGTTTGCTGCGCATTATTGGGTACAACAACACTGGAACACCAAGCCAAGATAAGGTTGTTCAGTGGTGGGATGCTCAGGGAATTGTGGGACTGGTCCTGTTCTTGCTTTGTGTGCTTTATTCGAGCATTCGCAATTCTTCAAACAGCCAAGTCAACAAACTGACCCTGACCAGTGACGAGTCTGCGCTGATCGAAGATGGCAGCAGCCGCTCGGAAAACTTTGAGGAAGGCGATGGTGTGAACCGTGCAGTCGACAACGAGAAGGACGGGGTTACATACAGCTACTCCTTCTTCCACTTCATGCTCTTCTTGGCTTCACTGTACATCATGATGACTCTTACCAACTGGTACAGTCCTGATTCTACTTATGAGACGATGACCAGCAAGTGGCCGTCGGTGTGGGTGAAGATCTCCTCCAGCTGGATCTGCATCGCACTGTATGTCTGGACTCTGGTCGCTCCACTGGTTCTCACAAACCGCGATTTCGACTGA

Function

symbol description
serinc1 Predicted to act upstream of or within phosphatidylserine metabolic process and sphingolipid metabolic process. Predicted to be integral component of membrane. Predicted to be active in membrane. Is expressed in female organism and nervous system. Orthologous to human SERINC1 (serine incorporator 1).

NR:

description
PREDICTED: serine incorporator 1-like isoform X2

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG:

id description
K23544 SERINC1_3; serine incorporator 1/3

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004318 True 1377 mRNA 0.51 9 42732816 42736569

Neighbor

gene id symbol gene type direction distance location
AMCG00004315 NA coding upstream 97848 42591866 ~ 42634968 (+)
AMCG00004314 NA coding upstream 156258 42548340 ~ 42576558 (+)
AMCG00004308 acat2,LOC107696107,LOC107726488,LOC107732634,LOC107601581,LOC107693222,LOC107549121,LOC102788057 coding upstream 377416 42350231 ~ 42355400 (+)
AMCG00004309 wtap,LOC105015380,LOC100196682 coding upstream 385734 42338514 ~ 42347082 (+)
AMCG00004305 NA coding upstream 473075 42220020 ~ 42259741 (+)
AMCG00004321 NA coding downstream 190499 42927068 ~ 42975785 (+)
AMCG00004326 NA coding downstream 377115 43113684 ~ 43114271 (+)
AMCG00004328 man1a1,LOC107833082,LOC106959811,LOC103360425,LOC107083523 coding downstream 420499 43157068 ~ 43177059 (+)
AMCG00004327 man1a1,LOC102782693,LOC106607779 coding downstream 479537 43216106 ~ 43234293 (+)
AMCG00004331 NA coding downstream 559083 43295652 ~ 43317408 (+)
G7293 NA non-coding upstream 256930 42475576 ~ 42475886 (+)
G7288 NA non-coding upstream 352855 42376625 ~ 42379961 (+)
G7278 NA non-coding upstream 367162 42364868 ~ 42365654 (+)
G7272 sod2,LOC102787761 non-coding upstream 396173 42333425 ~ 42336643 (+)
G7231 NA non-coding upstream 643163 42087791 ~ 42089653 (+)
G7418 NA non-coding downstream 499249 43235818 ~ 43237653 (+)
G7441 NA non-coding downstream 609781 43346350 ~ 43346959 (+)
G7485 NA non-coding downstream 855181 43591750 ~ 43595078 (+)
G7569 pvrl1b,nectin1,LOC107563312,LOC107758086,LOC107691861,LOC107670612,LOC107561861 non-coding downstream 1341776 44078345 ~ 44088037 (+)
G7584 NA non-coding downstream 1599882 44336451 ~ 44336681 (+)
G7329 fabp7,LOC108247051,LOC104945778 other upstream 41707 42688779 ~ 42691109 (+)
AMCG00004304 NA other upstream 516454 42210430 ~ 42216362 (+)
G7094 NA other upstream 1225585 41459576 ~ 41507231 (+)
AMCG00004257 dusp10,LOC106607590 other upstream 2391581 40326410 ~ 40341235 (+)
AMCG00004210 fam49a,znf395,LOC108440968,LOC106571599,LOC107696187,LOC107553485,LOC106608122 other upstream 4885096 37832623 ~ 37847720 (+)
AMCG00004355 hyou1,LOC100380749 other downstream 1881616 44618185 ~ 44640732 (+)
AMCG00004380 NA other downstream 3225441 45962010 ~ 45968306 (+)
G7999 NA other downstream 5410319 48146888 ~ 48147156 (+)
AMCG00004421 NA other downstream 6160548 48897117 ~ 49026355 (+)
G8099 NA other downstream 6195881 48932450 ~ 48934095 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000029_02583370_02587687 SERINC1.L, SERC1, SERINC1, SERINC1.S coding CI01000029 null 2583370 ~ 2587697 (+)