AMCG00004328 (man1a1,LOC107833082,LOC106959811,LOC103360425,LOC107083523)


Basic Information

Item Value
gene id AMCG00004328
gene name man1a1,LOC107833082,LOC106959811,LOC103360425,LOC107083523
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 43157068 ~ 43177059 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004328
ATGGAGAGACCCATTAAAGCGAGCGCCCTGGAGCTGAGCCAGGCTTTGCTGTGCACCACTGCTCTGCGCTTCCTTGCAAGTGGAAGTGGGGATGCTAGCAGTGACTTTCGAAACATTCAGGGAGCCACCATTGTGGATTCTCTGGACACCCTGTACATCATGGAGATGCATGAAGAGTTTGAAGCAGCCACTGAATGGGTGGAGAAGAACCTGGACTTTAATGTGaACGCAGAAGTCTCAGTTTTTGAAGTGAACATCCGTTTTGTGGGTGGACTCCTGTCGGCCTATTATCTCTCGGGCAAAGAgAGAACAAAGATCAATAGCTCTACCCTCCTCAGTGACAGGGCACAGACAAAGGCCAAAGGCAGTGAGGGGGGGTCCAGAGAAGAGCGCAGAACTGCGGAGCCGGCACACAGAGCCGTTCTCCATGAACAAGATGCCAAGGGAGAGGAGAAAGACAACAAGTTAACCATGCATACGATTGAAGAGCACCTGGTTGCTGTCTGA

Function

symbol description
man1a1 Predicted to enable mannosyl-oligosaccharide 1,2-alpha-mannosidase activity. Predicted to be involved in N-glycan processing. Predicted to act upstream of or within carbohydrate metabolic process. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi membrane and endoplasmic reticulum. Orthologous to human MAN1A1 (mannosidase alpha class 1A member 1).

NR:

description
PREDICTED: mannosyl-oligosaccharide 1,2-alpha-mannosidase IA

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004328 True 507 mRNA 0.52 5 43157068 43177059

Neighbor

gene id symbol gene type direction distance location
AMCG00004326 NA coding upstream 42797 43113684 ~ 43114271 (+)
AMCG00004321 NA coding upstream 181283 42927068 ~ 42975785 (+)
AMCG00004318 serinc1,LOC107598085,LOC107716862,LOC107675084 coding upstream 420499 42732816 ~ 42736569 (+)
AMCG00004315 NA coding upstream 522100 42591866 ~ 42634968 (+)
AMCG00004314 NA coding upstream 580510 42548340 ~ 42576558 (+)
AMCG00004327 man1a1,LOC102782693,LOC106607779 coding downstream 39047 43216106 ~ 43234293 (+)
AMCG00004331 NA coding downstream 118593 43295652 ~ 43317408 (+)
AMCG00004330 fam184a,LOC106607780,LOC106571378 coding downstream 152313 43329372 ~ 43338860 (+)
AMCG00004329 LOC107549683 coding downstream 173720 43350779 ~ 43362687 (+)
AMCG00004332 NA coding downstream 203611 43380670 ~ 43411096 (+)
G7293 NA non-coding upstream 681182 42475576 ~ 42475886 (+)
G7288 NA non-coding upstream 777107 42376625 ~ 42379961 (+)
G7278 NA non-coding upstream 791414 42364868 ~ 42365654 (+)
G7272 sod2,LOC102787761 non-coding upstream 820425 42333425 ~ 42336643 (+)
G7231 NA non-coding upstream 1067415 42087791 ~ 42089653 (+)
G7418 NA non-coding downstream 58759 43235818 ~ 43237653 (+)
G7441 NA non-coding downstream 169291 43346350 ~ 43346959 (+)
G7485 NA non-coding downstream 414691 43591750 ~ 43595078 (+)
G7569 pvrl1b,nectin1,LOC107563312,LOC107758086,LOC107691861,LOC107670612,LOC107561861 non-coding downstream 901286 44078345 ~ 44088037 (+)
G7584 NA non-coding downstream 1159392 44336451 ~ 44336681 (+)
G7329 fabp7,LOC108247051,LOC104945778 other upstream 465959 42688779 ~ 42691109 (+)
AMCG00004304 NA other upstream 940706 42210430 ~ 42216362 (+)
G7094 NA other upstream 1649837 41459576 ~ 41507231 (+)
AMCG00004257 dusp10,LOC106607590 other upstream 2815833 40326410 ~ 40341235 (+)
AMCG00004210 fam49a,znf395,LOC108440968,LOC106571599,LOC107696187,LOC107553485,LOC106608122 other upstream 5309348 37832623 ~ 37847720 (+)
AMCG00004355 hyou1,LOC100380749 other downstream 1441126 44618185 ~ 44640732 (+)
AMCG00004380 NA other downstream 2784951 45962010 ~ 45968306 (+)
G7999 NA other downstream 4969829 48146888 ~ 48147156 (+)
AMCG00004421 NA other downstream 5720058 48897117 ~ 49026355 (+)
G8099 NA other downstream 5755391 48932450 ~ 48934095 (+)

Expression


Co-expression Network