G1241


Basic Information

Item Value
gene id G1241
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 7523861 ~ 7750465 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU1466
ttttcaatgacatttatgcatttgtgaTATCATAAAAAAGGGCATTAGGTCATTTTAATATCCCCAGCTTATTACTTTTACTATCACATAACCCATAATTGAATTTTATATAAATTCCCAAGTTCACATCCATATTTTTCTCACAGACCCTCAGTCACTGGTGTTGCTTTTAAGTCTGACACTGAATACcatgaaaaaaatgaagctcTTATACATCTAAAGGCAACATTAAATTCTTACACATTCACAATACATAAGTGTTTTTTCACATGACAAGTTCAATTTCTTAATTCTATAAATCTAATTCACATTGTCATGTGTCACCAGTCTCCATTCTACCAATATGCAGACTCGCCGTCAGGGGGGGTCAATGGGTACAGATGACCCCGGGCCCAAGGCCCAGGGGGGCCCATGCAAAGGTCTATGGTTGACCCTTAAATGGGATCAAGTACAACAATTTACTTACTGACTTTTAACACTGAAAATAGAATTGTGAAAATGGTGCGGTCGCAGCACTTGTCCAGTCAGATGTGCAGAACACGCTGTGCACCGAGCGGCTCCTGTGAAGCGGGACTGACCAGCGAGTCAAAATGCCTCAGGTTTTTTTTAAGTCGGAATTTTAAGTCATAGCAATTAGTAACCAGTTCTACTGTTTGactgaacaataaaacagaagagtCTTCCTACTTTTTCAGAATAGCGGAACAAAGCCACGCCCCCCACGGTAATACCGATCACCATTCTTCAACGGTATTTCGATACCAAAAATCTGTCACCGTCACAGCTCTATACACTGATACATTTGTATCAAAtcaaaatagttaaaatgtataaaaccttcTGGATAGTGAGCCACATGCTGAAGTAAGAACAACTAGTATGACACTGAAGGCAATGTGACAGAAATGgacttttctttcttgtagGCAAAATAATCAATCACCTGAATAAGGCTGAATCCACACAGACCCTGTGGGACACCAGATAGAGTTGCCTGTCCACAGACCTGCATTGGACATTTCTCTGtctgtaacaataaaatatgtaattaattgtgCCTTATGAAGAAACATTCAGGTTATGTTACATGGCTTTATACCGGGTTTCCCACTATCTCTAGTCAATACATACCCTCTGAAAGATGTCATACCATCTCTTCTGGCTGGGAGCAGCTCTGTTTCTTGCATCAGCAGGGCAAGCCCCTGTCCTGACAAATCGCCATAGGCGGGACATCCACTCCCCGTCCCCCATGGCCTTGTGTGGTTTGTTTGGACATCATCTAAAGCCAACAGGATGGACATATCAGACTTCCACTCAACAAACCCagttaaataaatctataatatCAGCTTGAGTGATTTCACTCATTTTCACACAGCAGTGGCCAGTAGTGGGCCCATAACAAGAGACAACAATAGTGTTAGCTAATAGAAAAGCATCTGTCATTACTGCCTTCAGTGCTGTAGCCATAGTGTAAAGTGGCCAAATGATAAGCTGCCCAGTCTTTGGCAAGATGGGCACTGGCtgtggtttctgttccaacagAGATctt

Function

GO: NA

KEGG:

id description
ko04610 Complement and coagulation cascades

RNA

RNA id representative length rna type GC content exon number start site end site
TU1466 True 1552 lncRNA 0.59 2 7523861 7750465

Neighbor

gene id symbol gene type direction distance location
AMCG00003521 NA coding upstream 9451 7505463 ~ 7514410 (+)
AMCG00003527 NA coding upstream 41655 7466921 ~ 7482206 (+)
AMCG00003529 NA coding upstream 64385 7453411 ~ 7459476 (+)
AMCG00003522 trappc12 coding upstream 85414 7422803 ~ 7438447 (+)
AMCG00003523 NA coding upstream 113732 7408545 ~ 7410129 (+)
AMCG00003530 LOC108258189,LOC103368564,LOC106533618 coding downstream 228310 7978775 ~ 7980197 (+)
AMCG00003532 rsad2 coding downstream 534362 8284827 ~ 8292218 (+)
AMCG00003533 rnf144a,rnf144aa,LOC107752753,LOC106610698 coding downstream 566573 8317038 ~ 8337650 (+)
AMCG00003535 NA coding downstream 1068947 8819412 ~ 8842419 (+)
AMCG00003542 itgb1bp1 coding downstream 1207676 8958141 ~ 8959534 (+)
G1218 NA non-coding upstream 33980 7489445 ~ 7489881 (+)
G1187 NA non-coding upstream 158384 7364944 ~ 7365477 (+)
G1146 NA non-coding upstream 450252 7073404 ~ 7073609 (+)
G990 NA non-coding upstream 1537467 5986038 ~ 5986394 (+)
G983 NA non-coding upstream 1568041 5955604 ~ 5955820 (+)
G1253 NA non-coding downstream 45986 7796451 ~ 7796854 (+)
G1271 NA non-coding downstream 525297 8275762 ~ 8276983 (+)
G1291 NA non-coding downstream 589801 8340266 ~ 8340592 (+)
G1303 NA non-coding downstream 693275 8443740 ~ 8444024 (+)
G1343 NA non-coding downstream 910567 8661032 ~ 8666927 (+)
AMCG00003524 rps7,LOC107668222 other upstream 19846 7498040 ~ 7504015 (+)
G1012 NA other upstream 1028956 6487692 ~ 6494905 (+)
AMCG00003480 NA other upstream 2189109 5303450 ~ 5334752 (+)
AMCG00003469 NA other upstream 3001461 4514031 ~ 4522400 (+)
AMCG00003473 NA other upstream 3068719 4452564 ~ 4455142 (+)
AMCG00003534 id2,LOC106566577 other downstream 898660 8649125 ~ 8652470 (+)
AMCG00003541 asap2,LOC106566627 other downstream 1149991 8900456 ~ 8941751 (+)
AMCG00003544 NA other downstream 1325425 9075890 ~ 9106765 (+)
AMCG00003551 NA other downstream 1505363 9255828 ~ 9263468 (+)
AMCG00003570 NA other downstream 2027043 9777508 ~ 9781756 (+)

Expression


Co-expression Network