G1706


Basic Information

Item Value
gene id G1706
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 10236856 ~ 10238261 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU2011
TTTTgggtttgtttcatttgtattttgacaAACAGTTGTACAAGCATACTTTCTAAAAATCAGTTGATCACAtctttagtaaaataaagtttaaacataaaaagaaatTACCCAATTAACTGTAACATTTATACAGCACAAAAGGTTCGAGTCTttaatagaaaaagaaaaaaaaaaagtcagatgCTCACAATCTTCATCCACTTCTTCTGGACCACAATGCTACCCCTCTTTAATTCCAATTGTATCTTCTCGCAGGTGGTGGCAAAGGATAATTTCTCCCCGAGTTGTTCTCGGGTGTCTCTGCGGTCATTGTAGCGCTCATGGTAGCTGCTCGGCCCTCCTTGGCCCCTGCGCTGGTTTTGCTGGAATGCCGCACCCTGAGACTGCATCATTCGGTTCCACCCCACAGAGGCCTCATTTCCATATTGCCtgcttggaaaacaaaacatttaaattgatctCGACGCAAGATCaggcattattatttttgacattATACCTTCATAAAAATTACATGCACCGCTTGAAGGACaaaatttgtttgtttcctcccCACTCTGTGTGAGAGAATA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2011 True 575 lncRNA 0.44 2 10236856 10238261

Neighbor

gene id symbol gene type direction distance location
AMCG00003576 nkx2.1a,LOC105015794,LOC106610802,LOC102798947,LOC108428605,LOC100709876,LOC101467433 coding upstream 5185 10230121 ~ 10231671 (+)
AMCG00003575 nkx2.2a,LOC103359019,LOC101157822,LOC101466937,LOC107392558 coding upstream 54896 10179342 ~ 10181960 (+)
AMCG00003571 foxa2,LOC105909438 coding upstream 341868 9892778 ~ 9894988 (+)
AMCG00003568 LOC104960473 coding upstream 361013 9866100 ~ 9875843 (+)
AMCG00003569 prkd3,LOC101070414,LOC105015789 coding upstream 383184 9820927 ~ 9853672 (+)
AMCG00003580 NA coding downstream 237576 10475837 ~ 10495920 (+)
AMCG00003581 ralgapa2 coding downstream 268297 10506558 ~ 10532085 (+)
AMCG00003583 crnkl1,LOC106607683,LOC106571265 coding downstream 379296 10617557 ~ 10623372 (+)
AMCG00003590 NA coding downstream 391312 10629573 ~ 10631480 (+)
AMCG00003585 NA coding downstream 398227 10636488 ~ 10657573 (+)
G1574 NA non-coding upstream 533378 9700557 ~ 9703478 (+)
G1430 ywhaqb,ywhaq,LOC105896734,LOC108436740,LOC107733143,LOC107674035,LOC107752793 non-coding upstream 1209224 9009297 ~ 9027632 (+)
G1375 NA non-coding upstream 1392774 8843827 ~ 8844082 (+)
G1347 NA non-coding upstream 1536302 8699466 ~ 8700554 (+)
G1343 NA non-coding upstream 1569929 8661032 ~ 8666927 (+)
G1747 ralgapa2 non-coding downstream 193403 10431664 ~ 10457765 (+)
G1855 NA non-coding downstream 811890 11050151 ~ 11050644 (+)
G1891 NA non-coding downstream 989698 11227959 ~ 11228275 (+)
G1902 NA non-coding downstream 1092778 11331039 ~ 11403029 (+)
G1987 NA non-coding downstream 1331791 11570052 ~ 11570410 (+)
AMCG00003570 NA other upstream 455100 9777508 ~ 9781756 (+)
AMCG00003551 NA other upstream 973388 9255828 ~ 9263468 (+)
AMCG00003544 NA other upstream 1130091 9075890 ~ 9106765 (+)
AMCG00003541 asap2,LOC106566627 other upstream 1295105 8900456 ~ 8941751 (+)
AMCG00003534 id2,LOC106566577 other upstream 1584386 8649125 ~ 8652470 (+)
AMCG00003604 NA other downstream 1223402 11461663 ~ 11482931 (+)
AMCG00003606 NA other downstream 1251924 11490185 ~ 11491597 (+)
G1989 cnr1,LOC104936193 other downstream 1335470 11573731 ~ 11577329 (+)
AMCG00003614 NA other downstream 1486822 11725083 ~ 11729991 (+)
AMCG00003643 kif25,LOC100703631,LOC102203072 other downstream 2664305 12902566 ~ 12917002 (+)

Expression


Co-expression Network