G1989 (cnr1,LOC104936193)


Basic Information

Item Value
gene id G1989
gene name cnr1,LOC104936193
gene type unknown
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 11573731 ~ 11577329 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU2385
GTGACTTTATTTAAAGGCTTGATAACAGACGACATTGCATACGTCAAACACGCGTCCAGTGGATTGGGAcagaatttcttttttttctgacagaTTCTTCACATGCAGCCTTAATACAGAAGCCACTTCACATCAGGAGTTAATTTCGAAGACTGGCGGACAGGAACAAGAGCAGGAAAATGCCGACTGGAAAAACAGTTCCGAATAGTTTCACACCAAATTGAATGGTTACAGAACAAGAAATGTTAACCTAGCTATTTAAATCCTAATGTGCTATCAGGGTGAATAAAACTTCATTCTAGactgatttgtttgttaaaaaaaaattaaaaaacatttcatcacacacacagactcccAAGTTGATTCTCCAACAGGTTTCCTATGCAACAAATGCAAAGTTTGGTGTATAAGGTTTAAAGCCATTCAGTCCTTCTGAACAATCAACCTCACACATCCCCCAAAGTGTAACCCAGGGAGGATTTTGTTCCTTtaaggtaataaaataaatatttcaacaatatttaaacaaagtaGTAAGTTACAATGCATTATTTGAATCTACAATAACTATTAAttgtacacaaataaatacccCCAAAAGTATTGTGTTAACCAAACGCTGTTAAAcggtaaagaaaaaatatgtaataataataataataataataataataataataaaacaaaacaaaaaaacacaggcaCAAACACAGCGCACGTAAAgttcatttaaacattactCCATGAAGATTACGTTGGCGTGACCAGCACACCACAACAACATTAATTTCTCAGCAGGACTTGACACGGTGATCACATTTTGACAGCACTACAGGAGTATAGAATATGGTTCGTTAAAGCACATCTGTCTATGACCTTTTTAGATGAGAGCTGCGGTCATCGTCTATGTCAGCTGCACAGTGTTGTAAGCTGTGTTGTTGTGCATCTGTCTCATATTTTCAGGATAATACTGTacaatggttttttttttacatactacACTTGTTCTGTAAGTGCACTCTCAGTAGGAGGCTGCAGAAACTCAAGCCGTGTGTATCAAGCTTCTACCCACACCTACGCAATACTTCCAAGTAGCTACACTGTTTTCAGTTTACATGAGCAATTTGACATTTACTTTTCTACActggcaataaaaaaataaaattaatactaACAAAGTGAGTTAATTAAGTTAATGGCAAAGAAGAGCattcaaatctgaaaatattagTCTGAGCTAAAAATACAGGTATTGATCTGCGCTAAGATATCTGCAAAGAGTATATGTTTCAAGATGAAGCTTTCATTTTCAGccttcatatacatatatacatacatatacacatattcaGAAGATCAATTACAAAATCACTGTGTGTCATGAAATTTAGATGTGAGAACATCCCCCTACATTGTACATTTCTTCACACTGAGGAACCAGAGCCCCAATGTGAAGatcattttatatacaaactCAACAgttattccatttaaaaaaataatgagtgGAAACCCAAAGTTTAGTGTACAAGttgtaaaaaatgcaaaataactttATACATAAGCATGGCTGCAAACTGAATTTATACAAACTGATATTTCAACTATACATATCAACATTATTAGTTTCGGTTTAATCCTGGTAAAGATTTCTATAGCCCCTTGTCCCATGATTAAAGATTTAGACTTTGCAAACCTGAAGTCACAGTcgaaatattgttttaaaacgtAAGCTACAGTACCACCGACTGGACAGACCCGTCGAGGAGAACAGGGTGCAAATGAATGATAAAGCCCAGTGTAATTAAGAAAAATGCAGCAGCGGGACCTATATTAACACCACAATCCTTTTTCACGGACAGTGCTTGATTTCAAATTCCATTTGGCACTTGGGCAATGATTGAGACATTAAACACGTCTGCAATATGACAGCTCGAAGCATTTAAATGACACTGGCTCGTGTGACAGCcttgtgcattttatatttagGTTTCCTTTATTacttttggatttatttattaagaaaacaaattgcGGATCATTGTACTCTTGCTGCTGTATGGGTGGTGCTGTAAGTCATGAATCAGTTGACCAAGGCAGGTTAGACTGCCTCAGCAGACGTCTCGGTCGACACAGACATGGTGGCTTTGGCTATTTTCACAGTGGACTTCACACAGCTCTCTGCCACTTTGTGGGCAGCGTTCCTGTTCTGGTAGTCGGACTCCACGCTGTTGTCTAAGGGCTGGGCTGTCCCCCTGCAGAGCTGGAAGGTGCTGCGAAAAGCCAGCCGCAGGTCTTTGCTCCTCAGAGCGTAAATGATGGGGTTGACGGTGGAGTTGAACAGGCACAGCATGCTGCAGAAGGCGAAGATGGTCTTCGTGAAGTTGTTCATCTTCCAGAAGAGGTCGTAAACCATGATGGCCAGGACTGGGCCCCAGCAGATGATAAGCACCACCAGTATGAGCACCAGAGTCTTGGCCAAGCGGATGTCCATCCTCGTTTGCTCCGGCCTGGTGACCTGCACTTTGGTGCCGTCGGAGGAGTACACGATGACGCTCTTCTGAGTCCCACGGCTGAGCATCCTCACGGCGTGGTGGTGCGCCTTCCACAGGATGTACATGTAGGCATAAATGATGAACAGGAGCAAGACGCTGGTGACCCCGATCCAGAACATCAAGTAGTTCTCGTCGATCAGTGGGAAAATGTCCGAACACACAGAGTTGAGGCGCTTGCAGTTCCAGCCCAGCAGGGGGAGCACGGCGATGATAATGGAAATGGCCCACATCATACAGAAGGCGATGACGGCCTTCGTCTTGGTGACAATCCGCTTGTACGCCAGGGGCTTGTGAATGGAGATATATCTGTCTATGGCCGTGAGGAAGAGGCTGCCCACAGATGCGGTGAAAGAGGCCGTGACCCCCCCCAGCTTGAACAGAAACACATTGGGAGTGTCCTTCCGGTGGAACACATGGAAATCGACGAAGCTGTACACAAAGATGACACTGCCCAGCAGGTCCGCCACGGCCAGGCTGCCAATGAAGTGATAGGAGGGCCTGCTTCTGAGGGTGCGTGAGTTGAAGATCACACAGAGGACAACAAGGTTCTCCAGGACGGTGAAAGTGCCCAACGTGAGGGCCAAGACCGCCACGGCCAGCTGCTGGCTGGGAGTCAGGATCATAAAGCATTCCATATCCATGAAGTTCTGCCCACACTGGATGTTGCTCTCCTCCTCCATATTGCTCGCAGTGCTTTTGTTGCTGTATAGGTCAGTGATGTTGGTCGGGTAGAAGGGGATGCCCTTCAAGAAGAGCTCCTCGTCAGCCGTCACCTTGCCCTGGAACGAGTTGCTTCTGAACGCAGAGAAAGGCAGCTTCTGTAAGGCGTATCCAGTCTTCGTGAAGTCCGCATCGGCGCCGGGGTCATCGTAATGGACGTCATTTGACCCGAGGTACTGCAGCCCAGTGGTGATGGTTCTGAACGTGGTATCTGCTACGCCATCCAGGACAGACTTCATGGCTGCTCCACCGTGAGGTATGCAATATTACTAGAGAAAGTGTCCAGAATAG

Function

symbol description
cnr1 Predicted to enable cannabinoid receptor activity. Acts upstream of or within several processes, including axon development; methionine metabolic process; and positive regulation of feeding behavior. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in cytoplasm and plasma membrane. Is expressed in central nervous system; cranial ganglion; digestive system; head; and oocyte. Human ortholog(s) of this gene implicated in obesity; schizophrenia; and type 2 diabetes mellitus. Orthologous to human CNR1 (cannabinoid receptor 1).

NR:

description
PREDICTED: cannabinoid receptor type 1A

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2385 True 3569 TUCP 0.43 2 11573731 11577329

Neighbor

gene id symbol gene type direction distance location
AMCG00003609 NA coding upstream 14586 11542567 ~ 11559145 (+)
AMCG00003605 slc35a1,LOC106607707 coding upstream 46657 11519506 ~ 11527074 (+)
AMCG00003608 NA coding upstream 58252 11510405 ~ 11515479 (+)
AMCG00003607 NA coding upstream 65425 11493952 ~ 11508306 (+)
AMCG00003603 NA coding upstream 113668 11449320 ~ 11460063 (+)
AMCG00003615 NA coding downstream 155226 11732555 ~ 11742638 (+)
AMCG00003621 NA coding downstream 247456 11824785 ~ 11828430 (+)
AMCG00003620 NA coding downstream 262408 11839737 ~ 11840496 (+)
AMCG00003622 NA coding downstream 274498 11851827 ~ 11856733 (+)
AMCG00003624 NA coding downstream 429107 12006436 ~ 12024934 (+)
G1987 NA non-coding upstream 3321 11570052 ~ 11570410 (+)
G1902 NA non-coding upstream 170702 11331039 ~ 11403029 (+)
G1891 NA non-coding upstream 345456 11227959 ~ 11228275 (+)
G1855 NA non-coding upstream 523087 11050151 ~ 11050644 (+)
G1747 ralgapa2 non-coding upstream 1115966 10431664 ~ 10457765 (+)
G2018 NA non-coding downstream 235793 11813122 ~ 11831420 (+)
G2027 NA non-coding downstream 328654 11905983 ~ 11906188 (+)
G2042 NA non-coding downstream 448797 12026126 ~ 12028193 (+)
G2086 NA non-coding downstream 510208 12087537 ~ 12088986 (+)
G2125 NA non-coding downstream 642993 12220322 ~ 12259643 (+)
AMCG00003606 NA other upstream 82134 11490185 ~ 11491597 (+)
AMCG00003604 NA other upstream 90800 11461663 ~ 11482931 (+)
AMCG00003570 NA other upstream 1791975 9777508 ~ 9781756 (+)
AMCG00003551 NA other upstream 2310263 9255828 ~ 9263468 (+)
AMCG00003544 NA other upstream 2466966 9075890 ~ 9106765 (+)
AMCG00003614 NA other downstream 147754 11725083 ~ 11729991 (+)
AMCG00003643 kif25,LOC100703631,LOC102203072 other downstream 1325237 12902566 ~ 12917002 (+)
AMCG00003648 LOC106571761 other downstream 1448240 13025569 ~ 13042597 (+)
AMCG00003655 xdh other downstream 1577731 13155060 ~ 13206839 (+)
G2440 NA other downstream 2841187 14418516 ~ 14419732 (+)

Expression


Co-expression Network