G7418


Basic Information

Item Value
gene id G7418
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 43235818 ~ 43237653 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU9117
TGGCATCCCCGCATTTCCTATACGCAAGAAAATACATCCTCTCTGAGAGATCCTGGACTTCTCGTGGCTCGTATTAGTGAGGGGACTCGAGTTCCTGCTTATTTCATCCCATCTTCCCAAGAATGTAAATTGTTTGTGCCACTTATATTGATCATTTTATCAACAACTAAgccatttacatgtattttcagCAGATGTAGGTGTGCTTTGTTCTGTCAGATGTCGATTTCAGAGAGTTTTTGCTTCACAACTGAGCAGTGTTAAGtgtctgttattttgttttaggaCAGTCGTGGGTGGTGGTAATTAATCAAGTTGGGTTTATATTGTACTTTCTGTTTTAtgcaaattattgtttttaatttatttgaatgcacATAGGTTTAGTTCGGAGTACCTTTGGTGGGTTTCCCTTTGGAAGGTGTGTTAAAGTTTATCACCGTCTTAATGGTGAGTGCAGAGGGAAGTGTCAATTTAATGAACGAATGTCAGTGCAAATGACTCTTCAAATGTGAAACTGAATGGaattttgcctttttaattttctctctatctctctctttcctaGAAAGCACAAAATGctggttttcttatttttattaatcgTGGTTTGTCATAGGAAGGTATTCTAGTCAGTTTAAAATAAGCACAAGCAGGAATTATAACACGAAACGTATAAAAAAGATGCAAGGAGAGTAAGTACTTAAACTGTCGCTGTTCTACACTGGATTAACTGTTAAATTATTCCAATATATGCTGTGTAAAAGACATGGTAATATATGCTGAGGGGCAATAAAACTCTTAAACCTCCTCTGGGCTCTTTAACTCAAGCACTGACCGCAGACTGAGCGGGCCTCGAGCCACAGGCATGATACTCAGAAACATAACAGACATCTGACTTAAGTCAAAGCATAGTTAGTCGGTGCAGGTGCTGTGTTACCTCTGGGGAAGATTACAGCCTCACATCTCCCGTTTTTGGGGTGtttcttttgacatttttaatgaaaataattggttttatttgttgtggTTAGTTTTATGCATCATTGAATGTACAGTACATGCAGTTATTTTAGTCATCCTCGGTTTGTTTCCCGTGTAAATGTACTGTCTCGGAAGGTATTCTGTGTTCACGAGGTGTAATGCGGAGGTCAGCCCTGCGTACTGCCAGCCGTGCTGCATCAGTTGCTGTTCTTCACTGGAAGGGAAGAGGTTACTGTTCTTGCTCTATAACAGTGTCTCGTCagtgtgtttttgattttctcattttcatatttcatatttaatccttttatttttggatGTTCCTTTAAAGGCATCTTTTACTGGATAATCACCTCATGAAACAGGTCtcgagtgatattaaaatattgcatgCAGGGGTGAACTGCTGAATGAGCCTGGGAGTTATTGGCagataaactgaaaatattgttCTATAATGCACATTAACAAGTCATTTCCTTGCAtctttgttgaaaataaaaacagaaagtgtgcttttaatttcaaattgaacGTAAAGAGGAATCCTACGTGAAGAAGCCTTTTTTGTGTGAACTCGTTTATGGTTTGTGACAAGATGTAACTGTACAAAATTGCTGATAATCATTCCATTGTCTTTTTGTTGATATGCAATTTAATCTGTggggattgtttttgtttgtttgttttcctgtttttaaaatgtacatattccaTACAGGCAAATATGcctacatttatataaatcctATGACGTTACTGACTAAATGATAAAAATGAGCTGCAaaatttttaataattatatttgttacaCTTCTATTGTGAATAAAGAAaatcttttattatattttc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU9117 True 1836 lncRNA 0.36 1 43235818 43237653

Neighbor

gene id symbol gene type direction distance location
AMCG00004327 man1a1,LOC102782693,LOC106607779 coding upstream 1525 43216106 ~ 43234293 (+)
AMCG00004328 man1a1,LOC107833082,LOC106959811,LOC103360425,LOC107083523 coding upstream 58759 43157068 ~ 43177059 (+)
AMCG00004326 NA coding upstream 121547 43113684 ~ 43114271 (+)
AMCG00004321 NA coding upstream 260033 42927068 ~ 42975785 (+)
AMCG00004318 serinc1,LOC107598085,LOC107716862,LOC107675084 coding upstream 499249 42732816 ~ 42736569 (+)
AMCG00004331 NA coding downstream 57999 43295652 ~ 43317408 (+)
AMCG00004330 fam184a,LOC106607780,LOC106571378 coding downstream 91719 43329372 ~ 43338860 (+)
AMCG00004329 LOC107549683 coding downstream 113126 43350779 ~ 43362687 (+)
AMCG00004332 NA coding downstream 143017 43380670 ~ 43411096 (+)
AMCG00004335 NA coding downstream 289327 43526980 ~ 43534658 (+)
G7293 NA non-coding upstream 759932 42475576 ~ 42475886 (+)
G7288 NA non-coding upstream 855857 42376625 ~ 42379961 (+)
G7278 NA non-coding upstream 870164 42364868 ~ 42365654 (+)
G7272 sod2,LOC102787761 non-coding upstream 899175 42333425 ~ 42336643 (+)
G7231 NA non-coding upstream 1146165 42087791 ~ 42089653 (+)
G7441 NA non-coding downstream 108697 43346350 ~ 43346959 (+)
G7485 NA non-coding downstream 354097 43591750 ~ 43595078 (+)
G7569 pvrl1b,nectin1,LOC107563312,LOC107758086,LOC107691861,LOC107670612,LOC107561861 non-coding downstream 840692 44078345 ~ 44088037 (+)
G7584 NA non-coding downstream 1098798 44336451 ~ 44336681 (+)
G7614 NA non-coding downstream 1292687 44530340 ~ 44543143 (+)
G7329 fabp7,LOC108247051,LOC104945778 other upstream 544709 42688779 ~ 42691109 (+)
AMCG00004304 NA other upstream 1019456 42210430 ~ 42216362 (+)
G7094 NA other upstream 1728587 41459576 ~ 41507231 (+)
AMCG00004257 dusp10,LOC106607590 other upstream 2894583 40326410 ~ 40341235 (+)
AMCG00004210 fam49a,znf395,LOC108440968,LOC106571599,LOC107696187,LOC107553485,LOC106608122 other upstream 5388098 37832623 ~ 37847720 (+)
AMCG00004355 hyou1,LOC100380749 other downstream 1380532 44618185 ~ 44640732 (+)
AMCG00004380 NA other downstream 2724357 45962010 ~ 45968306 (+)
G7999 NA other downstream 4909235 48146888 ~ 48147156 (+)
AMCG00004421 NA other downstream 5659464 48897117 ~ 49026355 (+)
G8099 NA other downstream 5694797 48932450 ~ 48934095 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_018323 NA non-coding NC_007131.7 CM002904.2 41237704 ~ 41242669 (-)