AMCG00005941 (borcs8,LOC107554813,LOC107728595)


Basic Information

Item Value
gene id AMCG00005941
gene name borcs8,LOC107554813,LOC107728595
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 13244794 ~ 13250175 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005941
ATGGCGGCTCCACCAATCAACTGTTACGCCTCCGACCCAATTCTCCGACGGGCCAATGAAAACAGGCGGGTGAATCTGTTAAAGGCGCGGGGTGTTTGTGCGCGGAGAGTGACGGACAAGTTCACGGAGAGCATGTACGTGCTGGCCAATGAGCCGTCCGTCGCCCTGTACCGGCTGCAGGAGCACGTCAGGAGGTCGCTGCCGGAGCTGGTGCAGCACAAAACGGATATGCAGAGCTGGGAGGAGCAAAGTCAGGGGGCGATCTACACGGTGGAGTACGCCTGCAGTGCAGTGAAAAGCATGACCAACAGCAGCTTCTACTTCAAGAACATCGAGGGGCTCTTGCGTCAAGCCATCAGCATGAAGGACCACATTAACTCTGCCCACGGACGCAGTGAAGAGAGCCAGTCCAGTCCCAATGATACAcctccaccacccccacccagCTCCTCTTGACCCCAGGAAAAAAGCTTATCCCAAGGGCTTGGACTGCGACTGCAGCAGCCCCGACTCGGCCGACAGCGTCCGGTGCATCCTGGGCACGGTGCCgccgccgctgctgctgtaGGCCTCCTTGTCGGGGGAGTGGCTGTGCGTGGGGGAGGTCACGTGGCTGCCCGACGGCGGGGAGTAGCTTTGCTGCTGCTTGGGGTCGGCGCAGGGCGGGTAGGAGAGCTGCCGGTGGATGTCGGGCCTCCCCCGGTGCTGTTTGGGCAGCTTGTCGCCGGGGCGCTGCCCCCCCGCGCGGGCGCCGTTCTCGTGCTCGTTCTGGTACATGGTGTGGGAGAGCTCGGCGCGGCAGTGGCGGGTGGCGCGGGCCGCTATCACCAGGGAGTGCACCACTGTGATCAGCAGCACCAGCACGCCCGAGGCCAGGACACAGGCGCTGGCGATGCCTGTCTCAATCTCGAACACCAGCAGCATGTAGATCGACAGACCTGGGGATTGGGGGGAggatttcatattattttaaaataaacatctgtgaAGGGTTGTACTTGAAATGGGTTCAGGGGATCTTATCTGCTATCATTCAAGATACTGCAAGTTTCATGTGCTAGTCAGGACTGTGTTCTTGCCAGATGTGTGTAGGTCTCCAATTTCCAAATTAATCTCCTTAGAAAAAGGGCGGTGGACCCCTCTGCGCTGAAAGACTGTGGAGAGAGGCCCGGCTCAGGGCTGTGACCGCCGGACGTGGTGGACCGGTGTCCTGCAACGAGCAACATCCTCCACCAGAGCACTGCCGGACCAGAGCTGCCCACTCACTGTGCCCTCCCTTCAGCAGAAACCAAGGCAGATAACCTGAGCTCACCGGGCTGTGGAATGGAAATGGCCCACTGTGCCAGGCGGTGCATTAGGACActtgtgtactgtgtgtttataaaaGACCGTATTGTTTCAAGGGCGTGTCTGTGAAATGAGAGGGCATGGCAGGAAAGCTCGAACGAGACTCTTAAGATAGCAGACTGCTCCAGTCGACACGCTCCACTTCTctgtaaatagttttaaaaacctAACAAATCGGTAAATGCACACAGTTTTAATAGTCTCTTTTTGTTTGTGGACAGCAGGTGTTTTGACGCTTGTGTAATGCGATGTTTGATTAATGTTTTCaagcttttataaaaaaaaaaaaaaaaaactgagatgGTAGGCActgactttaaaaataaatattgcattagctcatttaaaaaaaaaaatatatatatttcttgggGTTGCTTACCTGCTAAGTAAACGGAAACACCAAGGCAGAAAAGTCCGATGGCCACGTGACGGACACTCCGGCTGTCCAGCAAGAACCAGTCTGCCCTGGGGGGAGAGGAATTCAATTCAAAAccagctttattggcatgaccagtTTATACAAGCAAAGCCAAAGTATTTACAGATACTTCATAACACTTATATTTCTTTTCTGTAAGTCTTCCCTTTAAAAGGTTgaacatttgaaagcattaaGTATTCAAAGAGGCACAGTAGCTGGGAAAGTACAGAACCTGCTAAAAGTGAGGGGTTGACTTGTGTTATACAggtatttcatatatatacatttcacttttCTGCAATTAGGTGTCCTGCTATTTTTGTTCCCACAAATACAGTCGACCATGACAAACTACTCGACTACAGTATATTGTGCGTGACTCATTACACAGATTAAGGATGGATAATGGCAGGAATGCCATGAATGCAGGTTACCCAGCGTGCATGTTGGAAAGACACAACCGGAATGTGCgtctttaaagtgtttttgttctctctccAATGCAAAGGCCAGCAGTCCGGAATAAGCCTCCCATTCCCTTTAACGGGAAGCCGGAGCAGAAGTATGTAATGCACCGTCCAGCGGTATATGTGCTGGAAAAGGCGCTTTTGTGCCCTAATTAAACGAGAGCGCATTGTGGGCAGTAAAGAGCTGAGAGCCCGGGCTGTAATTGTGTGTGACAGCGGCGACGTGGGAAAGCGCCGGGCGACGTGAGCGGGGAGCGCAATGAGGCACAGCCATTGTTCTGCGCCAGATTCGGGTTAGCGGAACAATAGCGGGTCAAGCAGGCAAAGGGACGGCGACACAAAAACGCATTTTGTAATGGAGGGGATTCACCCAGCGTCACAACTGCTGCTCCTCTTGACCTATTGTCTCACTTTTCAGCTTTGCATCATGCGCGCTTCTCACTGTCTGCAGTTGGGAAAGTTATTGCACATTGTAATAAACTTTAAGAGCCGAAATGAAACATGCATGGGCGCTTAATGACCTTTCCAGACCTTGATATGAATGTATGCTTAATTTCATGTACCAATTTTACATGCGTTACTG

Function

symbol description
borcs8 Predicted to be located in lysosomal membrane. Predicted to be part of BORC complex. Is expressed in brain and pharyngeal arch. Orthologous to human BORCS8 (BLOC-1 related complex subunit 8).

NR:

description
PREDICTED: protein MEF2BNB isoform X3

GO: NA

KEGG:

id description
K20822 MEF2BNB, BORCS8; BLOC-1 related complex subunit 8

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005941 True 2821 mRNA 0.51 6 13244794 13250175

Neighbor

gene id symbol gene type direction distance location
AMCG00005942 NA coding upstream 4745 13238322 ~ 13240049 (+)
AMCG00005926 hapln4 coding upstream 127613 13110844 ~ 13117181 (+)
AMCG00005925 NA coding upstream 136971 13097069 ~ 13107823 (+)
AMCG00005963 NA coding upstream 224500 12995584 ~ 13020294 (+)
AMCG00005965 NA coding upstream 249314 12969874 ~ 12995480 (+)
AMCG00005940 NA coding downstream 16207 13266382 ~ 13273509 (+)
AMCG00005950 mau2 coding downstream 147315 13397490 ~ 13408360 (+)
AMCG00005951 NA coding downstream 191692 13441867 ~ 13458187 (+)
AMCG00005949 ndufa13,LOC102786334 coding downstream 214370 13464545 ~ 13467370 (+)
AMCG00005973 yjefn3,LOC108429551,LOC108271278,LOC103041169 coding downstream 237122 13487297 ~ 13504383 (+)
G155412 NA non-coding upstream 3295 13220661 ~ 13241499 (+)
G155362 NA non-coding upstream 194600 13049834 ~ 13050194 (+)
G155360 NA non-coding upstream 196628 13047964 ~ 13048166 (+)
G155359 NA non-coding upstream 196899 13047575 ~ 13047895 (+)
G155358 NA non-coding upstream 198758 13045150 ~ 13046036 (+)
G155427 NA non-coding downstream 23432 13273607 ~ 13274658 (+)
G155452 slc25a42,LOC107671810,LOC101165762,LOC107552673,LOC107696381 non-coding downstream 131606 13381781 ~ 13386048 (+)
G155480 NA non-coding downstream 240766 13490941 ~ 13563786 (+)
G155481 NA non-coding downstream 278179 13528354 ~ 13672034 (+)
G155479 NA non-coding downstream 299042 13549217 ~ 13633003 (+)
AMCG00005964 gpx4b,gpx4,LOC107723219,LOC107660382 other upstream 211386 13025764 ~ 13033408 (+)
AMCG00005935 LOC105903927,LOC107660390,LOC105900968,LOC108427173,LOC107596281,LOC102310619 other upstream 349342 12894120 ~ 12895452 (+)
AMCG00005984 timm13,LOC106573564,LOC107731338,LOC107587003,LOC106613710,LOC107593051 other upstream 530223 12711778 ~ 12714571 (+)
AMCG00005987 NA other upstream 535251 12691816 ~ 12709543 (+)
AMCG00005895 NA other upstream 1338707 11903352 ~ 11906087 (+)
G155637 eps15l1,LOC107592720 other downstream 847629 14097804 ~ 14098696 (+)
G155638 NA other downstream 857998 14108173 ~ 14109870 (+)
AMCG00006009 tax1bp3,LOC106573550,LOC107685157,LOC106613700 other downstream 1125820 14375995 ~ 14383580 (+)
AMCG00006022 NA other downstream 1170207 14420382 ~ 14424746 (+)
AMCG00006034 vmac,LOC106573562 other downstream 1402024 14652199 ~ 14659497 (+)

Expression


Co-expression Network