AMCG00005973 (yjefn3,LOC108429551,LOC108271278,LOC103041169)


Basic Information

Item Value
gene id AMCG00005973
gene name yjefn3,LOC108429551,LOC108271278,LOC103041169
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 13487297 ~ 13504383 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005973
ATGCAGGGAAAGACACAGCAAGGACAATGTCTCCGATTGCTGCCCTGCCCCCCACACACCTCTCTGAGCTTCGCCACCATTCTGGAGAAAAGCACGGTCCGTAAGGCGGAGGCATCAGCTATCGAGACCGAGTTGCTAAAGGACTATCGCTTTGGAGAGCAGCAGCTGATTGAGATCTGGGGTCACGCCTGTGCCCTTGCCATCACCAAGGCCTTTCCTCTGAGCTCCCTGAGTAAGAAGCAGCCCACAGTGCTGGTCGTCTGTGGGCCGGGGGAAAACGGTTCGGTCGGACTGGTGTGTGCCCGGCACCTGCGTATATTTGAGTATGAACCCACCATATTCTACCCCAAGCGCTCCCAGCAGAGCCTGTACCAAGACTTCACAGTCCAGTGTGAGAAGATGGACATCCCTTTCCTGTCCTACCTACCCACAGAGGTGCAGCTGATAAACGACGCTTATAACTTGGTGATCGATGCCATTCTGGGCGTGGACACCGACCTAGCCGAGCAGCGGGAGCCCTACTCTGGCATCCTGGTCACGCTCAAGCAGATCAAGATTCCCATTGCCAGCGTGGACGTGCCCTCAGgctGGAACGCGGAAGAGGCGGCGAAGACGGACGGGATCAACCCCGAGGTCCTCATCTCCCTGACCGCGCCCAAGAAATGCGCGGCCAACTTCTCCGGGAAGCACTTCCTAGCCGGGCGCTTCCTGCCCTACGACATCCAGAAGAAATACGACCTCAACCTGCCCGAGTTCCCTGGCACGGACTGTATAATGGAGCTGTAAGGCCCGTCCCCTCCTTTCGGAGAACCCCCCCCCTCCGTCTGATCTTTTTTCCAGAAgtgaaaatgatatatatataaatatatataattatatatatattaaaaaatgcattttgtattttatagtgtactgtattatattgttgGTTGGGAGCGAGTTGTGCCTCAGCCCGTTTCTGATTTCTCCGATAGAGGAAAAGTAGAAGAGAGAGAATAGTTTGACCCATCAATGAGAGGAGCACAACACTGAGGCCGGCGCTGGAAGCATTCGAATCGGAGGCGTTTATATCAGTTCCACAATCCACTACGCACTGAAAgggttttaattgattaatgtaCAGCTACATGTCTACCACAGACGAGCTGAAATCTCTTCCAATatacattcagttgtgggtAGACTTGCtataaaaatatgcaaaccTTAGTTCCACTCAATTTATATGAACCAGAATATGACTAGGGGTTAATCTATACTGGAAGGTGCCACTTTTACATCGAGAGATAtctgcatatatgtatatgtgtatctaTTTATGTGTATCTATTTATCTACCTATATACAGTGTAGTCACAAATATTCACTCCCTTCATTGGAAAGAATATTTGAGGATTCCTTTGGCATAATTAAGTGTTTGTTCAACTAAACTTATTAATCAGTGATatgttttcagagtttgttgaacaccgTTTCAGCCGAGAGGAAACTGCCcataaaatacttttgatttaagACTAATCTTTGGATGACTGCTCTGTTGACTTCAGCGGAGCATACATGCAATCTCTGCAGAGTAAAAAGTGGTGCTTTCCAATACGGATTGGACATTTGCAGTGTATGTGTTCGGTCAGAGTCGGGGTAGGGAAGTATGACCACTTTTAGAGTAAATCGCTAAGAAAGCTGCTAATAAACCCAACCTCTCTCATCCTGAGGAACTCTTGCTCTCAAAGCTACTTTCTTGAATATAATCTTTCGAGGGAAAGAGGAAGTGGGATGAGTTTCTCAGTCTGAATTCACATTGACggcatgaaaaacaaagaaaataaagttggaAATAAACTGATTCCTAGAGCGAGCGGTTTTGAAGCTGTGGTGCTTTTGCATTGTATCTTGAGCTGTTAATTTGCTAACATTTACTCTCTTAGTAAAGGTTTTTTCTTGTACAcaggtgaaaataaaacaaagtttcaGTTGTGATGGTTCCCCGGAGTTGTTCGTATCTCAAACCCCTCTTTGAAACATGTGCTCTACTGTTTCCTCCCTGTTCTCGTCTTCGGAAGATGAAGACGCTAGTTTGGTTTTGAAAGGTTTGTAGAGTTTCCACTTGGTccaataaaatgtttctgcagT

Function

symbol description
yjefn3 Predicted to enable NADHX epimerase activity. Involved in hematopoietic stem cell proliferation and regulation of Notch signaling pathway. Acts upstream of or within several processes, including membrane raft distribution; negative regulation of angiogenesis; and regulation of cholesterol efflux. Predicted to be active in mitochondrion. Is expressed in somite. Orthologous to human YJEFN3 (YjeF N-terminal domain containing 3).

NR:

description
PREDICTED: yjeF N-terminal domain-containing protein 3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005973 True 2136 mRNA 0.46 6 13487297 13504383

Neighbor

gene id symbol gene type direction distance location
AMCG00005949 ndufa13,LOC102786334 coding upstream 19927 13464545 ~ 13467370 (+)
AMCG00005951 NA coding upstream 29110 13441867 ~ 13458187 (+)
AMCG00005950 mau2 coding upstream 78937 13397490 ~ 13408360 (+)
AMCG00005940 NA coding upstream 213788 13266382 ~ 13273509 (+)
AMCG00005941 borcs8,LOC107554813,LOC107728595 coding upstream 237122 13244794 ~ 13250175 (+)
AMCG00005974 NA coding downstream 7185 13511568 ~ 13521254 (+)
AMCG00005975 NA coding downstream 50597 13554980 ~ 13558150 (+)
AMCG00005968 NA coding downstream 229298 13733681 ~ 13743505 (+)
AMCG00006006 NA coding downstream 302100 13806483 ~ 13807496 (+)
AMCG00006001 LOC102201084 coding downstream 341241 13845624 ~ 13865346 (+)
G155452 slc25a42,LOC107671810,LOC101165762,LOC107552673,LOC107696381 non-coding upstream 101249 13381781 ~ 13386048 (+)
G155427 NA non-coding upstream 212639 13273607 ~ 13274658 (+)
G155412 NA non-coding upstream 245798 13220661 ~ 13241499 (+)
G155362 NA non-coding upstream 437103 13049834 ~ 13050194 (+)
G155360 NA non-coding upstream 439131 13047964 ~ 13048166 (+)
G155481 NA non-coding downstream 23971 13528354 ~ 13672034 (+)
G155479 NA non-coding downstream 44834 13549217 ~ 13633003 (+)
G155492 midn,LOC107687715,LOC107554818,LOC107655225,LOC107599463,LOC108271022 non-coding downstream 136531 13640914 ~ 13707404 (+)
G155496 NA non-coding downstream 174791 13679174 ~ 13690042 (+)
G155530 NA non-coding downstream 218317 13722700 ~ 13722905 (+)
AMCG00005964 gpx4b,gpx4,LOC107723219,LOC107660382 other upstream 453889 13025764 ~ 13033408 (+)
AMCG00005935 LOC105903927,LOC107660390,LOC105900968,LOC108427173,LOC107596281,LOC102310619 other upstream 591845 12894120 ~ 12895452 (+)
AMCG00005984 timm13,LOC106573564,LOC107731338,LOC107587003,LOC106613710,LOC107593051 other upstream 772726 12711778 ~ 12714571 (+)
AMCG00005987 NA other upstream 777754 12691816 ~ 12709543 (+)
AMCG00005895 NA other upstream 1581210 11903352 ~ 11906087 (+)
G155637 eps15l1,LOC107592720 other downstream 593421 14097804 ~ 14098696 (+)
G155638 NA other downstream 603790 14108173 ~ 14109870 (+)
AMCG00006009 tax1bp3,LOC106573550,LOC107685157,LOC106613700 other downstream 871612 14375995 ~ 14383580 (+)
AMCG00006022 NA other downstream 915999 14420382 ~ 14424746 (+)
AMCG00006034 vmac,LOC106573562 other downstream 1147816 14652199 ~ 14659497 (+)

Expression


Co-expression Network