AMCG00005949 (ndufa13,LOC102786334)


Basic Information

Item Value
gene id AMCG00005949
gene name ndufa13,LOC102786334
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 13464545 ~ 13467370 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005949
GTCTTGTGCTGGGACAGTCAAGATGGCGGCGTCCAAGGTGAAGCAGGACATGCCTCCTCCGGGAGGCTATGGACCCATTGATTATAAAAGGAACCTCCCGAAACGGGGGCTCTCCGGTTATAGCATGTTTGGTATTGGCATTGGCTTCCTGGTGTTTGGATATTGGAGGCTTTTCAAGtggaacagagagagaagGCGGTTGCAGATCGAGGAGCTGGAGGCGCGTGTAGCTCTGCTCCCGCTGCTTCAGGCTGAACACGACAGGAGGACGCTACGCATGCTTCGCGAGAATCTGGAGGAAGAGGCCCAGATCATGAAGGATGTGCCCGGCTGGAAGGTGGGCGAGAAGGTGTTCCACACTGACCGCTGGGTCACCCCGCTCTCCGACGAGCTGTACAACCTCCGGCCACAGGAGGAGCTGTTGCACAAAAAGTTTGGTTTCCAGTGGTACGTTTAAGCCAGAGCCGCCCCCTGCCACCGCCAGCATCGCTCTGGGAACGGACCCCTGGGATCACCGGCCCTCGGCAGCTCTGTCCCGCCATCAAGGCgtgttgtaaatgtttaatattaaatatcttttttttctctacttCTGAGGAGTCCTGTGAGTGAGGCGTGTCTGTCTTTTTTCTCACAAAGTCCTTTGGGAAATGCGTGTCTTTGTTTTGGGCTGCTGGGTACGTGGCGTCACGTCTTCTTGCTCAGGTCTGCCTATTCTGAGCTGGCTCGTTTGCC

Function

symbol description
ndufa13 Predicted to be located in mitochondrial inner membrane and respirasome. Predicted to be integral component of membrane. Is expressed in intestine. Human ortholog(s) of this gene implicated in nuclear type mitochondrial complex I deficiency 28 and thyroid gland Hurthle cell carcinoma. Orthologous to human NDUFA13 (NADH:ubiquinone oxidoreductase subunit A13).

NR:

description
PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13-like

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0008137 NADH dehydrogenase (ubiquinone) activity molecular_function

KEGG:

id description
K11353 NDUFA13; NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 13

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005949 True 735 mRNA 0.55 5 13464545 13467370

Neighbor

gene id symbol gene type direction distance location
AMCG00005951 NA coding upstream 6358 13441867 ~ 13458187 (+)
AMCG00005950 mau2 coding upstream 56185 13397490 ~ 13408360 (+)
AMCG00005940 NA coding upstream 191036 13266382 ~ 13273509 (+)
AMCG00005941 borcs8,LOC107554813,LOC107728595 coding upstream 214370 13244794 ~ 13250175 (+)
AMCG00005942 NA coding upstream 224496 13238322 ~ 13240049 (+)
AMCG00005973 yjefn3,LOC108429551,LOC108271278,LOC103041169 coding downstream 19927 13487297 ~ 13504383 (+)
AMCG00005974 NA coding downstream 44198 13511568 ~ 13521254 (+)
AMCG00005975 NA coding downstream 87610 13554980 ~ 13558150 (+)
AMCG00005968 NA coding downstream 266311 13733681 ~ 13743505 (+)
AMCG00006006 NA coding downstream 339113 13806483 ~ 13807496 (+)
G155452 slc25a42,LOC107671810,LOC101165762,LOC107552673,LOC107696381 non-coding upstream 78497 13381781 ~ 13386048 (+)
G155427 NA non-coding upstream 189887 13273607 ~ 13274658 (+)
G155412 NA non-coding upstream 223046 13220661 ~ 13241499 (+)
G155362 NA non-coding upstream 414351 13049834 ~ 13050194 (+)
G155360 NA non-coding upstream 416379 13047964 ~ 13048166 (+)
G155480 NA non-coding downstream 23571 13490941 ~ 13563786 (+)
G155481 NA non-coding downstream 60984 13528354 ~ 13672034 (+)
G155479 NA non-coding downstream 81847 13549217 ~ 13633003 (+)
G155492 midn,LOC107687715,LOC107554818,LOC107655225,LOC107599463,LOC108271022 non-coding downstream 173544 13640914 ~ 13707404 (+)
G155496 NA non-coding downstream 211804 13679174 ~ 13690042 (+)
AMCG00005964 gpx4b,gpx4,LOC107723219,LOC107660382 other upstream 431137 13025764 ~ 13033408 (+)
AMCG00005935 LOC105903927,LOC107660390,LOC105900968,LOC108427173,LOC107596281,LOC102310619 other upstream 569093 12894120 ~ 12895452 (+)
AMCG00005984 timm13,LOC106573564,LOC107731338,LOC107587003,LOC106613710,LOC107593051 other upstream 749974 12711778 ~ 12714571 (+)
AMCG00005987 NA other upstream 755002 12691816 ~ 12709543 (+)
AMCG00005895 NA other upstream 1558458 11903352 ~ 11906087 (+)
G155637 eps15l1,LOC107592720 other downstream 630434 14097804 ~ 14098696 (+)
G155638 NA other downstream 640803 14108173 ~ 14109870 (+)
AMCG00006009 tax1bp3,LOC106573550,LOC107685157,LOC106613700 other downstream 908625 14375995 ~ 14383580 (+)
AMCG00006022 NA other downstream 953012 14420382 ~ 14424746 (+)
AMCG00006034 vmac,LOC106573562 other downstream 1184829 14652199 ~ 14659497 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_038397 CABZ01102240.1 coding NW_003334215.1 KN149883.1 2235 ~ 5187 (-)