AMCG00005968


Basic Information

Item Value
gene id AMCG00005968
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 13733681 ~ 13743505 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005968
ATGCACGACCGCCCACAACTCGAGCCCTCAGTATTCCTAGTGGATCAGCAGATCTCACGCCACCCTGAGGCTCAGCACCTCTTGTCTCCTGTCCCTCCTCAGGACGTCCCGAAAGACCCGGGGAAGCAGGACGGCTATGTACTCCTGCTGGTCCTGCTGTCCATCTTCATCGGGGGGACTCTGGTCCTGCTGTCCGGACTGCTGGTCATCTGCCGGCGGTGCTGCGAGGGCGACCGCCGCTACtccagGGCCAGCGATGATCCTGAGAAGACCAACACTACCTACCTGGAGGACTCGCAGCCAGCACAGGAGATCACCATCAAGGTGGACGAGTCGGATTGCCTGTCCTCCTCCAGTTACCATGACGTTGAGACGGAGCGCTTCCTGTCCACGGGCTCCACGGGGCGCCGCGTGTCCTTCAACGAGGCCTCGCTGTTCGACCACGGCAAGAAGACACAGGAGAAAGGCCGCAGgtATACTCTCACCGAGGGCGATTTCCACCACCTGAAGAATGCGCGGCTCACCCACCTgcacctgcccccccccaccctgaagATCGTCACCATCCATGAGTGCGAGTCCTCCGAGAACAGCATCGCCATGACGACACACCCCGCTTCCAAATCCAGCCTCTCCATCTTTCAGCCAGCCGTGTGTCCTCTGCCGCAGACTGCGCTGACCAACCTGTCCGTCAGCCCCAGCTCCGCCCTGCCCGGCGACGCCCTCAACTCCATCGTGGACACCAGCTTCATggagaccccccccaccccccgcgcTGAGCCCGCCCACTCCAGCATGATCGAGATGATGGGAGCAGCCTCCTGGAGCGGGGGCGGTCTGGTGAGTGCGGGCGAGGGCGGGACTGCGGCAGGGGGCCCGACGGCAGGGGTGGCGGGCACCTCCTGCTCCGGGGGCATCTCTGGCAACCAGGGCACCATGCTGCAGTTCTTCACCAAACTGCGCCGGCACGCCAGCCTGGAGGGGGCCAGCCCATACTTCAAGATCAAGAAGTGGAAGTTTGACAGCAGCCAGAGGGCGTCCAGTCTGGACACTAGAGgATCTCCAAAGAGATGCCAGTTCCAGCGACAGAGAGCAGCCAGCGAGAGCATGGACCAGGAGGAGCATGACGCTCACCACATCGACATCATCCAGTACATCGCCCGCACGCATGGGGCGCCTTACTGCCCCAGTGCCCCCACCCCcgctgccaccaccaccaccaccaccaccgccgccgccgccgccgccgccgctaaCCTCCTGCCACCCCCCTCCACACCTCCACCCTCCCTCGGCAGGTTAGAGACAGTGGAGGTGGTGGTGGAAGTGGGCAGCAGTGGTGTCAGCAGTGGTGTCAGCGGTGGGATCACTGTGCCCCCCGagctgcaggaggaggaggagggaggggcgGGCTGCAGACAGGAGATCCCCGAGCACCACACCCTCTACCGGGACATCTGGACCCTGCGCGCGTCACTGGAGCAGTACGCCTCGTCGGACCAGAGCAGCAACAATGACAAGGATTCGGTCCGCAGCGACGCGGACAGCGTGTGCTCActcgggggagggggggagaaaggAGGGCTGCCCAGCTACCCATCGCAAGACATCGGGGACGAGCAGGAGGCGGAGCTGGAGCCACCCGGGGAGGAGATAAGGAAGGAGGGCTGCGAACGAGGGGGGAAGCAGGAGAGCGTGGACTCGGAGAGGGGCAGCGACGGGGAGTCGGGGAACCGGAAGCTGCTGCAGATGGACAGTGGTTACGCGTCCATCGAGGCCCCGTCCCGAGCGCCCGAGGATCTGCGGCTCTTTGGGAGCGCCAGCGGCAGCACCAAAGACAAAACAGCATCGGAAAAGAGACGCTTCTTCACCGACGCTGGCCGCAAGGGCACGGTGTGCGAGAGCTTCGATGAGGAGCTCGAGGAGGAGGCGACTGGGAGCAGCGTAGAGCTGGAGAGTCCACTGGGTTGGTCTCCATATGGGCAGATGTTCACCCCCCGGGAGCAGCCCACGCACTCGAACCTGCACCGACGGGACTACAGCATTGACGAGAAAACAGACGCGCTGTTCCACGAGTTTCTGAGGCACGACCCACAGTTCGACCAGCTGGAGTCTCCTCTACGCACCAAGCACCGCTCCCGGGTGCACCTGCGCAAGCAGTGGCAGCGCACCAAGCAGTACAGCGACCCCGGCGTGCGCTTCTCCCCCGCCTTCGAGCGCCACCGCACACCCCTGCGGCGCGGAGATAGCGTCAACTACCCACTGGACACCCGCTACCACAGCACCCTGCCCCGCATCATCAGTGCGGCCGACGAAGAGGCCAGTGAGGGTGGCTCCAGCTCCACAGAGGTGCCCAAGCTGCCCAGTGGGGCAGAGGCCAGGGCCGGGGAGGAGGAGCAGAGGAAAACCAgcccctgcagcagcagcagcagccggaCGATCAAGGAGGAGGATGATTCTGTTCCCAGttcctctccccccccaccctcagaCAGTGTCTCTGAGCTTCCTGAGCCCCTTGAGGACAGTAAACTGGCTGGGCAGCCCCCTGAGCCGTCAGACGACCGCACTTCCCCTCATCCCCCAGGCTACGGCCCACAGACCATCACAGCCGAGCTGACTGACAAGCTGGCGGCCAGCCTGGAGGAGCGCCTGTACACCAGCCTCCGGCAGGCCAAAGTCAGCCCTGAGTGTGTGGTGACTGTCACACATGCCTCTCCTGACCACAGCCCAGTGTAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005968 True 2739 mRNA 0.65 8 13733681 13743505

Neighbor

gene id symbol gene type direction distance location
AMCG00005975 NA coding upstream 175531 13554980 ~ 13558150 (+)
AMCG00005974 NA coding upstream 212427 13511568 ~ 13521254 (+)
AMCG00005973 yjefn3,LOC108429551,LOC108271278,LOC103041169 coding upstream 229298 13487297 ~ 13504383 (+)
AMCG00005949 ndufa13,LOC102786334 coding upstream 266311 13464545 ~ 13467370 (+)
AMCG00005951 NA coding upstream 275494 13441867 ~ 13458187 (+)
AMCG00006006 NA coding downstream 62978 13806483 ~ 13807496 (+)
AMCG00006001 LOC102201084 coding downstream 102119 13845624 ~ 13865346 (+)
AMCG00006000 matk,LOC106573821,LOC102798474 coding downstream 122548 13866053 ~ 13879407 (+)
AMCG00006002 NA coding downstream 137440 13880945 ~ 13883808 (+)
AMCG00005979 rax2,LOC106613680,LOC108430232,LOC106573820 coding downstream 157729 13901234 ~ 13906702 (+)
G155530 NA non-coding upstream 10776 13722700 ~ 13722905 (+)
G155492 midn,LOC107687715,LOC107554818,LOC107655225,LOC107599463,LOC108271022 non-coding upstream 26277 13640914 ~ 13707404 (+)
G155496 NA non-coding upstream 43639 13679174 ~ 13690042 (+)
G155481 NA non-coding upstream 61647 13528354 ~ 13672034 (+)
G155479 NA non-coding upstream 100678 13549217 ~ 13633003 (+)
G155538 NA non-coding downstream 2855 13746360 ~ 13747729 (+)
G155566 LOC106511986,LOC103138501,LOC103464095,LOC101469484,LOC102302661 non-coding downstream 79304 13822809 ~ 13824780 (+)
G155635 NA non-coding downstream 345831 14089336 ~ 14092874 (+)
G155636 NA non-coding downstream 351518 14095023 ~ 14096145 (+)
G155639 NA non-coding downstream 378622 14122127 ~ 14122773 (+)
AMCG00005964 gpx4b,gpx4,LOC107723219,LOC107660382 other upstream 700273 13025764 ~ 13033408 (+)
AMCG00005935 LOC105903927,LOC107660390,LOC105900968,LOC108427173,LOC107596281,LOC102310619 other upstream 838229 12894120 ~ 12895452 (+)
AMCG00005984 timm13,LOC106573564,LOC107731338,LOC107587003,LOC106613710,LOC107593051 other upstream 1019110 12711778 ~ 12714571 (+)
AMCG00005987 NA other upstream 1024138 12691816 ~ 12709543 (+)
AMCG00005895 NA other upstream 1827594 11903352 ~ 11906087 (+)
G155637 eps15l1,LOC107592720 other downstream 354299 14097804 ~ 14098696 (+)
G155638 NA other downstream 364668 14108173 ~ 14109870 (+)
AMCG00006009 tax1bp3,LOC106573550,LOC107685157,LOC106613700 other downstream 632490 14375995 ~ 14383580 (+)
AMCG00006022 NA other downstream 676877 14420382 ~ 14424746 (+)
AMCG00006034 vmac,LOC106573562 other downstream 908694 14652199 ~ 14659497 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_020352 cbarpb coding NC_007133.7 CM002906.2 18786797 ~ 18824801 (+)
grasscarp (Ctenopharyngodon idella) CI01000030_02843446_02856037 CBARPB coding CI01000030 null 2843446 ~ 2856216 (+)