G155538


Basic Information

Item Value
gene id G155538
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 13746360 ~ 13747729 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU195926
TTTTGAACAGCTTTCTAGGAATAAAGACAGGGCAAAGGTGCGTCactgagaaagaaaggaaaaagaaacgGCAGACCGATTTTGCACTCTTCTACAGAACACTCTCATTCCACAGCCCCAGACAGATCTTCCTTCTCGAGTCCAGTCAGCGCTTCCACTAGTTATTCTGGAGACAGAAGACACCTTTTCTTACCAAAACCAAAATCTGCCTCAGAGAACAGGACGCCACAGGGAAAGCGCTAGGATCACATTTCAGAGAGAGCCGTGAACAGAACTCCCTTTTCTTTTACTCGCGAAGCCATCCATCTCACAGAAAGTGCGCAGGGTGAGTCACAACTGTAAAAATAAGTGGAATccaaaattgcatttttcttttcagcattTACTTCAGGTCGGAAATGATGACTTCCCACCGCTTCCCTGGGATTGTGGTCAAATTATGTTCAAATGTTGTGGTGGGGCAATAGCATTGGTAGATATTGCCTTATTGAGACAAGATCCCCCTCTGCAATGAGGGGAATATTTATCAAGAATATGTATCCAGTTCCAACAGCGACAGAGCGACACAGACGGAGAATGGGTTCTAAAAATAGTCcgatatcaatcaatcaatacatcaatAGATCAATAGATCAAGATCCATTTAGTCTTTCGTACGAAATAGGAGTGCAGTGGTGCTCTGTTGCAGAAAATTAATCAGTCTGTCCGTGATCTTTAGGTCTAGACTCAATTAGGGATGAAGTGCTTGTGATAAAGAGATGTTTTATCAAGCTAGCTACTTTTAATTTTCTAAGATTTACATGTGtaatattgcaaaaaaaaaatttttgtatggaaaatacttaattattttggttatatactgtatgtagaAACATCCTCActatatgacatatatatacTAATGCAATGATTAGCATTGTACTGAACGATACCTTGTCTAAGACATTCATGTGTATAGTTTTGCATGTAtaaaatacagatgtttttcttatccccccccctccatctcAGACTACAAGCCTGAGAACAAGTACCACTGTTGATgcaattttacaaaacaatcaaaaacagacgGAAAAGGAATAATCCACCAATTGTATTGATATTCTGAGATGTCTGTACTTAATTTATTCCGATTCATTTCTTTATTGGTGATGCTGGCTGACAAAATGTGCAACGTTTAATTCCATgagtttgatttttattttctgaaatctaTTTCTGTTTTCCTGCTTATGGACCGCTCCTTTCTGAAGGAGAGCCATTAAAAATGAGCTGAGcattctcaaaaaaaaaaaaaaaaaaagccaatgcTGAACTTGATTCATTAAGCCTTGTTGAGGGACCAAAAATGTACTTCTATTTTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU195926 True 1370 lncRNA 0.38 1 13746360 13747729

Neighbor

gene id symbol gene type direction distance location
AMCG00005968 NA coding upstream 2855 13733681 ~ 13743505 (+)
AMCG00005975 NA coding upstream 188210 13554980 ~ 13558150 (+)
AMCG00005974 NA coding upstream 225106 13511568 ~ 13521254 (+)
AMCG00005973 yjefn3,LOC108429551,LOC108271278,LOC103041169 coding upstream 241977 13487297 ~ 13504383 (+)
AMCG00005949 ndufa13,LOC102786334 coding upstream 278990 13464545 ~ 13467370 (+)
AMCG00006006 NA coding downstream 58754 13806483 ~ 13807496 (+)
AMCG00006001 LOC102201084 coding downstream 97895 13845624 ~ 13865346 (+)
AMCG00006000 matk,LOC106573821,LOC102798474 coding downstream 118324 13866053 ~ 13879407 (+)
AMCG00006002 NA coding downstream 133216 13880945 ~ 13883808 (+)
AMCG00005979 rax2,LOC106613680,LOC108430232,LOC106573820 coding downstream 153505 13901234 ~ 13906702 (+)
G155530 NA non-coding upstream 23455 13722700 ~ 13722905 (+)
G155492 midn,LOC107687715,LOC107554818,LOC107655225,LOC107599463,LOC108271022 non-coding upstream 38956 13640914 ~ 13707404 (+)
G155496 NA non-coding upstream 56318 13679174 ~ 13690042 (+)
G155481 NA non-coding upstream 74326 13528354 ~ 13672034 (+)
G155479 NA non-coding upstream 113357 13549217 ~ 13633003 (+)
G155566 LOC106511986,LOC103138501,LOC103464095,LOC101469484,LOC102302661 non-coding downstream 75080 13822809 ~ 13824780 (+)
G155635 NA non-coding downstream 341607 14089336 ~ 14092874 (+)
G155636 NA non-coding downstream 347294 14095023 ~ 14096145 (+)
G155639 NA non-coding downstream 374398 14122127 ~ 14122773 (+)
G155640 NA non-coding downstream 375269 14122998 ~ 14123347 (+)
AMCG00005964 gpx4b,gpx4,LOC107723219,LOC107660382 other upstream 712952 13025764 ~ 13033408 (+)
AMCG00005935 LOC105903927,LOC107660390,LOC105900968,LOC108427173,LOC107596281,LOC102310619 other upstream 850908 12894120 ~ 12895452 (+)
AMCG00005984 timm13,LOC106573564,LOC107731338,LOC107587003,LOC106613710,LOC107593051 other upstream 1031789 12711778 ~ 12714571 (+)
AMCG00005987 NA other upstream 1036817 12691816 ~ 12709543 (+)
AMCG00005895 NA other upstream 1840273 11903352 ~ 11906087 (+)
G155637 eps15l1,LOC107592720 other downstream 350075 14097804 ~ 14098696 (+)
G155638 NA other downstream 360444 14108173 ~ 14109870 (+)
AMCG00006009 tax1bp3,LOC106573550,LOC107685157,LOC106613700 other downstream 628266 14375995 ~ 14383580 (+)
AMCG00006022 NA other downstream 672653 14420382 ~ 14424746 (+)
AMCG00006034 vmac,LOC106573562 other downstream 904470 14652199 ~ 14659497 (+)

Expression


Co-expression Network