AMCG00006053


Basic Information

Item Value
gene id AMCG00006053
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 14700791 ~ 14707124 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006053
CAGATCCGCATCTCCAGTGCAAAGGCATTCTCTCAAGGACAGGCAGGATACACACAGTGGCGAGGGCAGGCTACTGGAGCTGTCTTGCCGAGGCTGCCGGGTCACTCCTGTGCGAACTGAGGAAAAGACGTCACTCTCCGGGCGGGCAGGGCAAGCCAGTGTGGGCAGCCGAGGTCTGAGGTTGTGGGTTGGCGACTTTCCGCGCCCGCAGTCATGTACAACAGCAAGTACTCGATGGCCAAGTTCGGCGTGGAAGCCAAGGACATCCACGCGTCCAAGGGCAAGAACTGCGGCTACTATGTGAAGGTCGTCTTGTTCTTCTCCTCGCTCATTCAGTCGCTTATCATCGTGGGCCTGGTGCTCTTCATGATCTACGGGAAACCTGAGGTGTCCGTGGACGAGATGagggtgcaggagctggagaagaACGCGGCCTGGCTGTCTACGGACCGCAACCTGCTGAAGCTGCAGATTCGCAACGTCTCCAACCACCTGAACAGGACCGAGCAAGCGAAAAAGCTGAATGATCTCGAACTGCTGAGAGCTTGGAAATTGGTCAATGACTCTTCTGTCCTGATACGGAACCTTAACCAGAGGATGAGTGACCTGAACACAGCCAGCAAGGACAGGGACAACTTTCACTTGGAAAGCATCAGTCTGCGCAAAAAGGAGACCGATTTAAAGCAACAGCTCGACAGTTTCACCAAGAAGTGTGAAGATGACATCAGACATTCCTTGGAGGGCATACAAACCATCACCACCTCTTTCCAGGAAAAGATTCGCAACCTGTTTGCTCCCTCCCACGCCTTCTCCCTCACCTGCGAGAAACAGAGAGCCCACCTGGACAGCATCCGCGCCAACTGCTCCACGCTGTCCCAGGACATCGAGAACAAGTTCCAGCCCTACCTGAACAGCGTCAGTGCCACCGTGTCCCGCATCGAGAGCGAGAACAGCCGCCTGACGGTGCAGAACGGGCGGCTGAGCACCGAGTACAAGGAGTGCAGCGGCAACCTCTCCGCCGCCCACAAGGACACAGAGAGACGTCTCAAAGAGCAGCAGAACAAGCACGACCACGAGGTGGAGCGCCTGCTGAGAGAACAGACCAACCTCCGTGGCCAGGTGGACCTCAAGGACCAGACCATCAAGGTGCAAAACAACGAAAATCTCCTGCTCAACAGCAAGATCGCCAGCCTCAATGCCTCCCTGGCCAACTGCATCCCCAAGATGACATGCAAAAACACATGAAGGCAGTGATGGAGTTTGAGAAAAAGATGTCTGGagtgTAAGTGTAGAAGCAGCACTTGAACTATGAAGACACGGCACAGCTTTCCCCTTGCAGCAAACTAATCTACTCTTTGGTTGACTTTGCACTGAACTGCTACATCTCTACACTTTGGACACTGAGACGCTCTGTGTTCAGCTGTGTGGTCAGCTGGGGGTCAGTTTTTCCCCCAAGCTTGTAATCATCAATATTTAAACTTAGaatcacttaattaaattagtcaACACAAAGgaagtctattttaaataatatttttaatgacatcttgtgaactgtaaacagactctcctcagaactacagaGTAGTCATTCCcatcaaatatattgaatgcagcaacattataaacaaagtgtTTAAGTGCAAGTTGAATATTAAAACCATCAAGGTTATCAAAAAGACTGGATTAGCTTAGAATGTAAGCCAAtaggccaaaataaatactttcttgaTATGCACCAACAAtatcaaacacaacaaaatgttaaagtgcCAGTTGAATTTCAAAAAGGTACATAAGTCTTTgcaacataaataacaaaaggagaatgttgatttttttttcaccccattAAGCCAGCAACTGAGACAGACCAGTCGGTTTACATTATTAGGGGACAAAGCAGCTCTCTTTTTCTGGACATTCTgtctttaaagtaattaaaacagagGCAAAAAAAGTGCTGCGTCaattgcgtttttttttttaatgcgttaaacatttcaaatgaatcgCAAAGATTAATGCGTTAAATCccccagccctaatatatatatatatgtattaaagtGGAATGTGGGtctgatattttttattaaaggtCAATTGACTTgccaaaattaatacattttgctaCTTCCTTCACTAAGGGAATGTAatgatgggtgtgtgtgtgtaatgcaacCGATTTAAAGATGACTTCAAAGttgtgtgtattattgtgcTGAGGACTATTGTGCTTTGGTTGACACTTCATAGATTgcaaattaacttaatttctgATCAACGGCACCTTGAACAAAAGTGTCTATTCTAACCCACTGATGGCTCATCTACTCTTGGTTTGAATGGGCCATTATTTTACACAGGAAGATAGCGGCTCAACATCAGTTCTGACTTAACACAGCCTTACAGTTTGTACAAAAGGTTATGTATATACttataataaagcttttttcttgATGAAAAAACAGAGGTCGAAtctcattttcaatttcaaaacgTGTCCAGATCCTTCTTTGTTTCAGGGCCACCCCCCCCccgacaaacacacacacacacacacacacacacacaacactgtccTGCAGTCCTGTAGTCTTCAATCTTCACTTTAACCCTTTGATTCGAAGGCCTCCGATAAAATCACTACAGTAACATCTCCTTGACccattgattttttatttatttgcagatccCAGTTTCCTACACCTTAGTGGTTTTTGAGAGGAAAGGTACAGTTTACTGCTCGCAAGCcaatcagtacaaaatgttTATATGAATCTGTCTGAGGGCCAAGAGAGACGGATGGGAGGGAGGTACACAAACTCCGGTgtttacagaagaaaacaatactTCCCATGCAATTGAGAACACGGATGTCCCATCAACACAGGCTCCGAACAAGGTGTCTGtatacacaattttaaagaGTTGGACGGTGACGAGACATATCCAAACATTAATCTGACCCCCCGATTGCGCACAACCGCATTAAAATAGACCTGCTCTACTTACAAGGTCTTCCGTTGTAAACTGCCGTGTTGTTgaggaaaacacaaaagccTCTTTCCTCACTGGCCACGCAGGACAGTTTACGGAAGACTTCAGTGGCATGTTTATCTAATCTGTTTATCTCTTTGTCTCAATGGGAACCCTCTTACATCAAGCACATACTCAAAACACTCCCAATGGTAATTGTCACTCCTAGTGTACGCACAGTGGCGTTGCAGGTTTAAGTAACTGTTGGGAAAACACTTATTCCTCATCTCCTAAAGAACCAGAGGATTCTGAGGATGGGAGGGGAGGTAAACAAACGTTCACATTTTCCATGAAGAGTTGGGCGCCACTTGATAAATGACAGGTGAAGGAGTCTCTATGCTCCGGTTCTCAGGATATCCTTTGTTTAACTCCACCAGAGAGCCAACTGCCCCTTCCAGGGCTGAGGGcactgcaaacaaaaacaaaaggcaaccCACGCACGCCACTCGCGCCGGGCCCCCAGCCTGGTACTGAGAGCCTCCATGGGAATCACCCTTAGCGGTCAGTGTTGAAGTCTGAAACCCGTGTTTCCAAAATAAAGACCACATCCAGCCATCACCTTCCTTTGAATATACAGCTGATAACCCCTAGcttcatatttcttttttagttCTTGTTATGACGGGCTTTTGTGTTATGCTTGAAGCCGATTAACCAATTACATAACTAAGGGAATGGAGTAGAATTCGGCTGAAATTATACACTTTATTGAGAcacttttccatttaaatatatgcCACACatattaagggttcaattaaataattgagagcttggttggaacaaaaaccagcagggttggGGGTTCTCCAAGACAGGATTGAGAACAACTGATCTAAGGTATATATCACTGTGTCTAGATAAATCTTTATCCTGAATCATAATCGAGTAAACCCACATACTTATTCACCTTTTGTCAATTTTTGATAgacatataaaaatactttcaaataacGTTCATTTGCGAGAAAAGAACACAAATAAGGTCTACTAATGGAGTATATTCAGTTATTAACAtcgttttaaatatatattaattatatattaaattaataaactaaacaTCTTTATGTCCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006053 True 4118 mRNA 0.44 4 14700791 14707124

Neighbor

gene id symbol gene type direction distance location
AMCG00006056 NA coding upstream 6203 14686100 ~ 14694588 (+)
AMCG00006054 lonp1,LOC107744642,LOC107548847,LOC107678106,LOC107679084 coding upstream 19606 14671161 ~ 14681185 (+)
AMCG00006016 NA coding upstream 158906 14523381 ~ 14541885 (+)
AMCG00006017 NA coding upstream 212394 14485902 ~ 14488397 (+)
AMCG00006023 LOC107552681 coding upstream 216246 14481973 ~ 14484545 (+)
AMCG00006055 ano8,LOC103359425 coding downstream 35073 14742197 ~ 14756210 (+)
AMCG00006042 NA coding downstream 89488 14796612 ~ 14798855 (+)
AMCG00006041 NA coding downstream 112544 14819668 ~ 14827527 (+)
AMCG00006040 nr2f6,LOC108238456,LOC103359430,LOC101171737 coding downstream 131565 14838689 ~ 14848138 (+)
AMCG00006031 NA coding downstream 283770 14990894 ~ 14991358 (+)
G155790 rpl36,LOC107678109,LOC107741803,LOC107744644 non-coding upstream 17789 14628442 ~ 14683002 (+)
G155774 NA non-coding upstream 151723 14548596 ~ 14549068 (+)
G155773 LOC106568166,LOC108280735,LOC103375566 non-coding upstream 152638 14547659 ~ 14548153 (+)
G155772 NA non-coding upstream 153191 14547370 ~ 14547600 (+)
G155744 NA non-coding upstream 206709 14493726 ~ 14494082 (+)
G155832 NA non-coding downstream 53273 14760397 ~ 14761728 (+)
G155856 NA non-coding downstream 158790 14865914 ~ 14866479 (+)
G155897 NA non-coding downstream 272181 14979305 ~ 14980490 (+)
G155898 NA non-coding downstream 273977 14981101 ~ 14981620 (+)
G155913 NA non-coding downstream 343731 15050855 ~ 15055957 (+)
AMCG00006034 vmac,LOC106573562 other upstream 41294 14652199 ~ 14659497 (+)
AMCG00006022 NA other upstream 276045 14420382 ~ 14424746 (+)
AMCG00006009 tax1bp3,LOC106573550,LOC107685157,LOC106613700 other upstream 317211 14375995 ~ 14383580 (+)
G155638 NA other upstream 590921 14108173 ~ 14109870 (+)
G155637 eps15l1,LOC107592720 other upstream 602095 14097804 ~ 14098696 (+)
AMCG00006092 rps28 other downstream 396332 15103456 ~ 15105567 (+)
G155932 NA other downstream 400085 15107209 ~ 15107734 (+)
AMCG00006065 lsm4,LOC106613629 other downstream 870960 15578084 ~ 15584761 (+)
AMCG00006107 LOC107709901,LOC107680255 other downstream 1257309 15964433 ~ 15988775 (+)
AMCG00006111 smim7,LOC106573893 other downstream 1325768 16032892 ~ 16035969 (+)

Expression


Co-expression Network