AMCG00006922


Basic Information

Item Value
gene id AMCG00006922
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 25976490 ~ 25993105 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006922
ATGAGCTATCCTGAAGCGAAGAGAGATGGGTCTCCTCTTAAACACCACCCCAAGCACACGGTGAAAGTCCCAAACAGCAGCTCTCCGCAGTCCAGGCTACAATCCAAACCAAAGCAGCAGGTCGCTCCATCTGAACACAGCCCTGACTCGGAGGCTCAGGATGCGCCCATACACAGCCCCAACGGCATCATAGCACAGATGGAGAACAACGATAAGGAGCCGGCAGCGCTCACTGAAGACATCCTGGAGACTTGTGCAGAGAACCTCAGGACGACAGCTGACAACAAACTTGTGAACGGCGACGGCGGGGACTTAAGTGCAGAAGCTTCAGGCGCCCACCAAGTTATAAATAGCTCCAGTCACACACAAGCCAGGCTGTCCACGGATATTGCTGCTGTAGTCTCTGTGGATAGGACCGATGCGGTTGCTGATCCTGGCTTGGAAGAGAAGATAGAAGCTCAAAATGAGGAGAGACAAAAGGAGGAGAGTATGGAAATCAAGGAAACAAATGAACAGAAGCTTTATAAGATAGTAAATGAGCTTTTACTAACTGAAAAGGCTTATGTTGCTCGACTCAACCTCCTGGACAAGTGGTTTTCTGCCAAACTGATGGAAGAAGCCTTGAAAGGCACATTTCCAGTGGAAGTGGTGAAAAACATCTTCTCCAATATTTCTTCAATCTACACCTTCCATGGACAGTTCTTGCTGCCAGCCCTGGAGAAGCGCATGGAGGAATGGGATTCTACACCAAGGATTGGTGACATCCTGCAAAAGCTGACCCCTTTTCTCAAGATGTATGCAGGGTATGTGACGAACTTTGACCAGGCCATGGAACTGGTAAAGCAATGGACAGAAAGGTCGCCTCAGTTTAAAGCCATCATCCAGGACATTCAGAAACAAGAGGTGTGCGGGAATCTCACTCTGCAGCACCACATGCTAGAGCCCGTGCAAAGAGTGCCTCGCTATGAGATGCTCCTCAAAGACTACCTGAAGAAACTTCCCCAGAACTCTTCGGACCGCAAAGACGCAGAGAAATCCCTGGAAATCATAGCTACTGCAGCCACACACTCGAACAGCGCAATTCGAAAAACGTTCAACAACATGTTGCTGTACTGTGTGCCGAAATTCAGCCTAGTAGGACAGAAGTACACGGTGCGTACCAGGATAGGCATTGAAGCCATGAAGGTAGTCGAGACCTCAAATGAAGACTACCCCCACACCTTCCAGGTATCAGGGAAAGAGAGGACCCTGGAGCTGCAGGCAAGATTGTTCTTTGCTGGAGCTCATGTGCAGCAGCATGGGCTACTGTGGAGCATGCATCTCAAGGGCCGTTTTTCTCTGTCCCTCCAGACAGCAGAGCTGGGCAAGCGAGCCCCAAGGTGGATCCGCGACAACGAGGTCACCATGTGCATGAAGTGCAGAGAACCCTTCAACGCACTGACCCGAAGGCGGCACCACTGTAGAGCCTGTGGATACgtGGTATGTTGGAAGTGCTCAGATTATAAAGCTCATCTGGAGTACGACAGcaataaaatcaacaaagtTTGCAAAGACTGCTTTTTAATCTTGACGGGACATACGGACGAGGAGAGAAATGACGGCAAAAAGAAGGGAATCTTAGAGATCGAGGCTGCTCAGTTCTGTGGAAACAGCATCATCTGTGGATTCCTGCAGTACTTTGAGAAGACCAGACCGTGGCAGAAAATGTGGTGTGTCATTCCCAAGAAAGAGGGGCTTGTTTTATATCTATATGGAGCACCTCAGGATGTGAAGGCCCAGTCTACCATCCCTCTCCTGGGATACACAGTGGATGAGAATCCCAAATCAGTGGACTTGTCGGCTAGTTTCAGGTTGTCGCAGTCCAAGTCAGTCCATACCTTTGCGGCCGAGACAGAGGAGCTCAAACAAAAGTGGCTGAAGGTCATCAAACTGGCGGTCATAGGGGAGGTGTCGGAGCCGGCCCACCCTGTACAGAACTTAGAGCCCACGGGGTCCCAGGACAGTCCGATAGATTCTCTCTGA

Function

GO: NA

KEGG:

id description
K05723 FGD4; FYVE, RhoGEF and PH domain containing 4

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006922 True 2022 mRNA 0.50 12 25976490 25993105

Neighbor

gene id symbol gene type direction distance location
AMCG00006918 NA coding downstream 27363 25937707 ~ 25949127 (-)
AMCG00006919 NA coding downstream 64908 25899551 ~ 25911582 (-)
AMCG00006920 NA coding downstream 83410 25888257 ~ 25893080 (-)
AMCG00006915 atp6v1e1,LOC107085735,LOC100708725,LOC102197685,LOC102784574,LOC101477634,LOC106514808,LOC106914460 coding downstream 129005 25838755 ~ 25847485 (-)
AMCG00006914 NA coding downstream 197872 25747136 ~ 25778618 (-)
AMCG00006923 NA coding upstream 99792 26092897 ~ 26105386 (-)
AMCG00006925 NA coding upstream 141066 26134171 ~ 26140819 (-)
AMCG00006924 NA coding upstream 191146 26184251 ~ 26185762 (-)
AMCG00006926 NA coding upstream 199284 26192389 ~ 26361451 (-)
AMCG00006929 mtpn,LOC106576424 coding upstream 615438 26608543 ~ 26639948 (-)
G113431 NA non-coding downstream 109211 25866385 ~ 25867279 (-)
G113395 NA non-coding downstream 230505 25741068 ~ 25745985 (-)
G113393 NA non-coding downstream 237623 25738554 ~ 25738867 (-)
G113391 NA non-coding downstream 256915 25719362 ~ 25719575 (-)
G113390 NA non-coding downstream 257698 25718417 ~ 25718792 (-)
G113468 NA non-coding upstream 2536 25995641 ~ 25995929 (-)
G113479 NA non-coding upstream 8341 26001446 ~ 26038323 (-)
G113573 NA non-coding upstream 1066264 27059369 ~ 27059594 (-)
G113586 NA non-coding upstream 1162430 27155535 ~ 27155857 (-)
G113587 NA non-coding upstream 1172074 27165179 ~ 27165398 (-)
AMCG00006866 NA other downstream 2405357 23568155 ~ 23571133 (-)
G113050 NA other downstream 2569283 23404175 ~ 23407207 (-)
AMCG00006854 NA other downstream 3018184 22953176 ~ 22958306 (-)
AMCG00006841 NA other downstream 3778826 22130495 ~ 22197664 (-)
AMCG00006813 NA other downstream 5011928 20854057 ~ 20964562 (-)
G113530 NA other upstream 506910 26500015 ~ 26500681 (-)
G113645 ptn,LOC106609498 other upstream 1409495 27402600 ~ 27527348 (-)
G113775 LOC100846954 other upstream 2274157 28267262 ~ 28292598 (-)
G113833 NA other upstream 2718114 28711219 ~ 28812548 (-)

Expression


Co-expression Network