AMCG00009483


Basic Information

Item Value
gene id AMCG00009483
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 39393569 ~ 39401188 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009483
ATGGGCCCCCAGGGGTCCGAGGCCCTGCTGGACAGAAAGGATTCAGAGGCCTGGATGGATTGCCAGGGGCACCAGGTCGAAAAGGGGAGAAAGGCAATCCAGGAGGTCGAGGGCAGCCAGGAAATCCAGGGTCCGCTGGGATCCCGGGGACAcagggagagaagggggtgCAGGGGCAACGTGGGCTGCCTGGATTCCCTGGTCGTGATGGGAGAGACAGTGGACCATCTGGACCTAGGGGAGAGCCCGGAGATCGAGGGATGCCTGGCTTTCCAGGGATTTGTATTGAAGGACCCAAAGGAGACAGGGGGCCTCCTGGGCCTTGTGGAGAGAGAGGACAACCAGGTTTTCCAGGCCCCCCAGGTCCACAAGGGCGTGAGGGTCCTTCAAACTGCCGTGCTGCCATTCGGAGTTTCATCTTCACTCGTCACAAGGCGTGATACTCCCCAGTGCCCTGAGGGGAGCCGGCGGCTCTACAAAGGCTACTCTCTCCTCTTTGTGAACGGAAATGAAAGGGCACATGGCCAAGACCTAGGTACCCTTGGAAGCTGCCTGCAGAGGTTTTCCAcaatgccatttttattttgcaatccCAATGACACATGTAATTATGCTTCAAGGAATGACTACTCTTACTGGCTTTCTACTGATGAGCCAATGCCAGAAAACATGGCTCTGATCTCAGGACCGTCTCTAGAAAGATTTGTAAGCAGGTGTGTAGTGTGTGAAACCAAAGCCAATTCAATAGCAGTTCACAGCCAAACAAGGGATATCCCAAACTGTCCAGCAGGCTGGGATTCCATGTGGGCAGGATTCTCATTTATCATGCACACGGCGGCCGGGGCAGAGGGCTCGGGACAGGCCCTGGCGTCTCCGGGATCCTGTCTGGAGGAATTCCGCTTCATTCCCTTCATCGAGTGTCACGGCCGGGGGACCTGCAATTACTACACTGACTCCTACAGCTACTGGCTAGCAACACTCAATCCCTCCACAATGTTTAGGAAGCCGGAACCCCAGACACTAAAGTCAAATTACCATCACAACATCATCAGTCGTTGCCGAGTCTGCATGAAGCAATAA

Function

GO:

id name namespace
GO:0005581 collagen trimer cellular_component
GO:0005201 extracellular matrix structural constituent molecular_function

KEGG:

id description
K06237 COL4A; collagen type IV alpha

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009483 True 1080 mRNA 0.55 10 39393569 39401188

Neighbor

gene id symbol gene type direction distance location
AMCG00009484 NA coding upstream 4 39378249 ~ 39393565 (+)
AMCG00009479 NA coding upstream 90784 39277091 ~ 39302785 (+)
AMCG00009477 NA coding upstream 238475 39133854 ~ 39155094 (+)
AMCG00009474 NA coding upstream 493032 38869487 ~ 38900537 (+)
AMCG00009473 NA coding upstream 550258 38841956 ~ 38843311 (+)
AMCG00009482 NA coding downstream 3141 39404329 ~ 39405173 (+)
AMCG00009481 NA coding downstream 8304 39409492 ~ 39415596 (+)
AMCG00009489 NA coding downstream 81973 39483161 ~ 39503369 (+)
AMCG00009490 NA coding downstream 104746 39505934 ~ 39508504 (+)
AMCG00009488 NA coding downstream 159539 39560727 ~ 39566286 (+)
G57287 NA non-coding upstream 86795 39306488 ~ 39306774 (+)
G57286 NA non-coding upstream 87339 39303337 ~ 39306230 (+)
G57175 NA non-coding upstream 558624 38757380 ~ 38834945 (+)
G57164 NA non-coding upstream 760218 38633097 ~ 38633351 (+)
G57161 NA non-coding upstream 765434 38627919 ~ 38628135 (+)
G57329 NA non-coding downstream 58210 39459398 ~ 39459676 (+)
G57378 NA non-coding downstream 405395 39806583 ~ 39806928 (+)
G57401 NA non-coding downstream 473693 39874881 ~ 39875170 (+)
G57428 NA non-coding downstream 540034 39941222 ~ 39943036 (+)
G57457 NA non-coding downstream 629358 40030546 ~ 40033333 (+)
G57105 NA other upstream 935977 38442255 ~ 38457592 (+)
AMCG00009428 NA other upstream 1776873 37608305 ~ 37616696 (+)
AMCG00009429 NA other upstream 1788445 37530822 ~ 37605124 (+)
AMCG00009415 wwtr1,LOC107588432,LOC107732229,LOC107662944,LOC107572084 other upstream 1930064 37422017 ~ 37463505 (+)
AMCG00009405 pfn2,LOC105899220,LOC106598797,LOC105028925 other upstream 2025898 37348108 ~ 37367671 (+)
AMCG00009480 sst1.1,LOC106579799,LOC105009822,LOC107586749,LOC103023622,LOC107582287 other downstream 33712 39434900 ~ 39437017 (+)
G57430 NA other downstream 546818 39948006 ~ 39949200 (+)
AMCG00009516 NA other downstream 685286 40086474 ~ 40105052 (+)
G57604 NA other downstream 1589614 40990802 ~ 40994659 (+)
AMCG00009563 camk2n1a,camk2n2,LOC107659987,LOC108443638,LOC107557885,LOC103024774 other downstream 2195041 41596229 ~ 41599124 (+)

Expression


Co-expression Network