AMCG00009770 (hsd17b10)


Basic Information

Item Value
gene id AMCG00009770
gene name hsd17b10
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 45701933 ~ 45704510 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009770
GGAAACCGCCGCAGACCCCGCCCCCGGCGCAGCAGCGGACTGGCAGTAAAGATGGCGGCGATCAGGAGCCTGAAGgggATGGTGGGGCTGGTGACGGGGGGTGCGTCGGGCCTGGGCCGGGCCACAGTGGAGCGGCTGGTCAGTCAGGGGGCCCGCGCTGTGATCCTGGACCTTCCCAGCTCAGATGGGGCCAGCCTGGCACACAGCCTGGGGGAGAGCTGCGCCTTCGCCCCCGCTGACGTGACGTCGGAAGAGCAGGTGCAGGCGGCTGTGGGCGTGGCCCGGGAGCGGTTCGGGAGGCTGGACCTGGCGGTGAACTGTGCTGGCATCGCTGTCGCCgttggCCAGGCTGCGTACTCAGCCTCGAAGGGGGGCATTGTGGGCATGACTCTGCCCATCGCGCGGGACCTGGCGCCCATGGGCATCCGTGTGGTCACCATCGCGCCAGgcctgTTCTCCACTCCACTCCTGGCCGGGTTACCTGAGAAGGTGCGCACCTTCCTGGCACGGCAGGTGCCCTTCCCCAGCCGGCTGGGAGACCCCGCGGAGTTCGCCCACCTGGTGCAGGCGCTGGCCGAGAACCCCATGATCAACGGAGAAGTCATCCGGCTGGACGGGGGGATCCGCATGCAGCCCTGAGACGCacggagacagagagatggaaagagggagagggagggaggaaaagagCGTGCAGACCtaagagaggggagggagggggatggtCTCTGAGTCACAGTAgtgagagtgtttgtgtgtctcagcacagaggagagaaacgAGCATCTCTGGGAGTCTCTGTACTGTGGCTGCAATTCCAGAGTTCATCACAATATCGATCAgggtttctctccctctctctctctctctttctctctctttctctctctgttgagTGTTTAGTATTGAAggatcccctctctctctcctctaacGTGTGTAGCAAACCCAGGGATTCTCAGTCATCAGGAATAAACAGACAGAGAAGGGGGGGGCAGGAGAGACTCTGTGATTGTAGCTGTGCGGTGGGGGTGCAGCCGGAGTGGTATTAATCCGGGGGGCCGGG

Function

symbol description
hsd17b10 Predicted to enable oxidoreductase activity. Is expressed in central nervous system; endoderm; head; immature eye; and paraxial mesoderm. Human ortholog(s) of this gene implicated in chromosome Xp11.22 duplication syndrome; pheochromocytoma; and syndromic X-linked intellectual disability type 10. Orthologous to human HSD17B10 (hydroxysteroid 17-beta dehydrogenase 10).

NR:

description
PREDICTED: 3-hydroxyacyl-CoA dehydrogenase type-2

GO: NA

KEGG:

id description
K08683 HSD17B10; 3-hydroxyacyl-CoA dehydrogenase / 3-hydroxy-2-methylbutyryl-CoA dehydrogenase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009770 True 1066 mRNA 0.63 5 45701933 45704510

Neighbor

gene id symbol gene type direction distance location
AMCG00009771 smc1a coding downstream 6671 45683560 ~ 45695262 (-)
AMCG00009767 NA coding downstream 23078 45678241 ~ 45678855 (-)
AMCG00009756 NA coding downstream 243563 45457812 ~ 45458370 (-)
AMCG00009754 NA coding downstream 299518 45397189 ~ 45402415 (-)
AMCG00009745 mecp2,LOC105898998 coding downstream 350753 45345981 ~ 45351180 (-)
AMCG00009768 huwe1 coding upstream 1357 45705867 ~ 45738830 (-)
AMCG00009773 fam120c coding upstream 58667 45763177 ~ 45771249 (-)
AMCG00009776 NA coding upstream 70359 45774869 ~ 45781213 (-)
AMCG00009777 NA coding upstream 77733 45782243 ~ 45799948 (-)
AMCG00009775 wnk3 coding upstream 96892 45801402 ~ 45811884 (-)
G59042 NA non-coding downstream 21813 45675703 ~ 45680120 (-)
G59022 NA non-coding downstream 37092 45664474 ~ 45664841 (-)
G59003 NA non-coding downstream 66234 45635390 ~ 45635699 (-)
G59002 NA non-coding downstream 66619 45634682 ~ 45635314 (-)
G58982 NA non-coding downstream 72560 45591747 ~ 45629373 (-)
G59077 NA non-coding upstream 41431 45745941 ~ 45746254 (-)
G59090 NA non-coding upstream 43047 45747557 ~ 45748458 (-)
G59099 NA non-coding upstream 55201 45759711 ~ 45763140 (-)
G59191 NA non-coding upstream 202744 45907254 ~ 45908142 (-)
G59202 NA non-coding upstream 204071 45908581 ~ 45964055 (-)
AMCG00009766 srpk3,LOC107601770,LOC107674354 other downstream 59189 45637747 ~ 45642744 (-)
AMCG00009755 NA other downstream 236556 45458743 ~ 45465377 (-)
AMCG00009748 NA other downstream 375878 45320757 ~ 45326055 (-)
AMCG00009742 NA other downstream 424336 45251637 ~ 45277597 (-)
AMCG00009739 NA other downstream 471476 45168941 ~ 45230457 (-)
AMCG00009769 phf8,LOC107563633,LOC106567021,LOC107716077 other upstream 44166 45748676 ~ 45757951 (-)

Expression


Co-expression Network