G58982


Basic Information

Item Value
gene id G58982
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 45591747 ~ 45629373 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU73729
cttatttaaatggtttattttttcatgttgttttccaCACTCGTTTTATTCCAAAGACacagtgaataaatacatccagGGAGACGGTAAGAGCATAATGCCAGTATTTACAGACAAGATAAAGACACGCACTCCCGCACTCGCACACAAACACGTACTCACTCACACTTGGAAAACTATACACAATGCAAAAGTAGGGGAGGGAGGCCTGGTCTCTGTACTGGGGACACTGGGACCAGAGTGGCGGTCTTAGTGGTTGGCCTGGGGGGACCTTAAACTACAGGAATGACTATAAatagacgtgtgtgtgtgtgtgtgtgtatcatctCTCCTTGTGCTGGTACAGAGATGGCAGCAACAGACAGCTGACAGTTCACATTGGGAgggagaatatatatatatatatatatatatatatatatatatatataaagagagaaagacaataCCTGCAgattttaaacaggaaaataaataaatactaatacaaataaatacaaaatgatcatgatgataataataataataataataataataatatggataaAGTGTCTGATAATATTTGTAACTGAACTGGGATATATGACCAGAGACTCGCATCGCACCCACGCTGCCCccacacaccctcacactgacacacagtacAGCGCACTAACCCTGGCACACAGGGCCCCAGACCAGAAGAGCACTACTGCACTGGGACCGGGGACAAGACTGCGGCTGGTGTGgaaacttacaaaataaattacaaaagctcaaaataaaatgtctatacATATAATTTCAGATGTATGgatattagtgtgtgtgtaacaaTTTAATACGATGATCTTCAGAAGCTGCAGACGAACTCCAGACAACTACAACTGCTAACCCCTACAGCACAGAAGCACTGCTGGACGCGTCACAAAggataaatgcatacattaaaatacacaaataaatatggttttcagagcaaaaacaaaaactgactccccagcacagggacacagagccACCACGCACAGCAGGACACAGGCTTCCAGTTTTCTACATCAGCAGTTCGTGTCAGCCATCATCACAGTCCAGTGATTGCTGGCGAGAGCCACGGGGAGCTCCCTGCCAGTCTCTCACAGACCCTGGCACTCTCCCAgcaccctccccctctccctctcagacaGAGCATCACTTTGGCTACTTGTGCTTCCAGtctattactattattcttattcatGTGCACTGAGCCGGACACAAGGACTGACCATTGTCACTTTGTTTCgtctcttttctttttgcttttatttggttTCAGATTTCGTCGCGTAATACGGTCCAGTGCGATTTGCTGCTTATTTGAATGACTTTCTTCAGTTGAATTTTCTGACAGACGGATGGGTTTCGCCACGGAGGGAGTTGCTTGTGCTTTTATAGAATCAGAAGGCACATTTGGCTTTTAGTATAAATAAGCGCTATTTACAGCAGTGGGGTACAATCTGGCAGTGACAGTGTGCAAGAGCTCCGAGCTCGGGCAGGGGGGgcggaggagagaggaggacacACAGggcagaggtcagaggtcacagtgCAGAGGAGCGGTGTCTGAACACTCAATACATGATCATCACTCAGTGGTGTATTCAGGTGTGTTGCTACACAGGATCCAGTGTGCAGGTgtaacagtcagtcagtcaactactgtgtgtgtgacggGTCTGTGTCCAGTGTTCACCGGTCAGAGGTTTACAGAGCAGCTGATTCTAGTGCTGTTATGTCAGTCAGTGAGGCATTGAGAgaaccccccccaacacacacaacagcccCCGCACAGAACTCTGGGAACAGTCCACCAcaaatctgtgtgtgtctgtgtgcatgtgtgtgcagaCAGCCCTCCCCACAGTCCGTTACACTTCAACAGCCCCGTGGCTGTGCGAATGAGTGCCGCGTCTCTGTGCCAGACTGAGCTGGGCTCCTGTCGTTTATGGGACGCCGAGTCACTGGACAGAGGGAAGCGCATCTCaggcacacacatatatacaatcATGTTCACACATTAAAACTCCCAACCGAACTGGTGTGTGCGTCTACCGTAGTGTGGAGCGGTGCagtgtagagtgtgtgtgtgtgtgtgtgtgtgtgtaagaatgtgt
>TU73730
cttatttaaatggtttattttttcatgttgttttccaCACTCGTTTTATTCCAAAGACacagtgaataaatacatccagGGAGACGGTAAGAGCATAATGCCAGTATTTACAGACAAGATAAAGACACGCACTCCCGCACTCGCACACAAACACGTACTCACTCACACTTGGAAAACTATACACAATGCAAAAGTAGGGGAGGGAGGCCTGGTCTCTGTACTGGGGACACTGGGACCAGAGTGGCGGTCTTAGTGGTTGGCCTGGGGGGACCTTAAACTACAGGAATGACTATAAatagacgtgtgtgtgtgtgtgtgtgagtgtgtat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU73729 True 2135 lncRNA 0.46 2 45591747 45629373
TU73730 False 329 lncRNA 0.44 2 45602221 45629373

Neighbor

gene id symbol gene type direction distance location
AMCG00009756 NA coding downstream 133377 45457812 ~ 45458370 (-)
AMCG00009754 NA coding downstream 189332 45397189 ~ 45402415 (-)
AMCG00009745 mecp2,LOC105898998 coding downstream 240567 45345981 ~ 45351180 (-)
AMCG00009744 NA coding downstream 273419 45315275 ~ 45318328 (-)
AMCG00009746 LOC105912249 coding downstream 286374 45287018 ~ 45305373 (-)
AMCG00009767 NA coding upstream 48868 45678241 ~ 45678855 (-)
AMCG00009771 smc1a coding upstream 54187 45683560 ~ 45695262 (-)
AMCG00009770 hsd17b10 coding upstream 72560 45701933 ~ 45704510 (-)
AMCG00009768 huwe1 coding upstream 76494 45705867 ~ 45738830 (-)
AMCG00009773 fam120c coding upstream 133804 45763177 ~ 45771249 (-)
G58978 NA non-coding downstream 6376 45584803 ~ 45585371 (-)
G58979 NA non-coding downstream 8740 45582506 ~ 45583007 (-)
G58940 NA non-coding downstream 37033 45473535 ~ 45554714 (-)
G58904 NA non-coding downstream 218675 45372758 ~ 45373072 (-)
G58903 NA non-coding downstream 246488 45339500 ~ 45345259 (-)
G59002 NA non-coding upstream 5309 45634682 ~ 45635314 (-)
G59003 NA non-coding upstream 6017 45635390 ~ 45635699 (-)
G59022 NA non-coding upstream 35101 45664474 ~ 45664841 (-)
G59042 NA non-coding upstream 46330 45675703 ~ 45680120 (-)
G59077 NA non-coding upstream 116568 45745941 ~ 45746254 (-)
AMCG00009755 NA other downstream 126370 45458743 ~ 45465377 (-)
AMCG00009748 NA other downstream 265692 45320757 ~ 45326055 (-)
AMCG00009742 NA other downstream 314150 45251637 ~ 45277597 (-)
AMCG00009739 NA other downstream 361290 45168941 ~ 45230457 (-)
G58653 NA other downstream 806613 44782918 ~ 44785134 (-)
AMCG00009766 srpk3,LOC107601770,LOC107674354 other upstream 8374 45637747 ~ 45642744 (-)
AMCG00009769 phf8,LOC107563633,LOC106567021,LOC107716077 other upstream 119303 45748676 ~ 45757951 (-)

Expression


Co-expression Network