AMCG00010649


Basic Information

Item Value
gene id AMCG00010649
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 38253115 ~ 38276767 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00010649
GTTAAAAACCAATCCGACCGATTTGCTGAATATTAATTCACCCCAGACGTGAAATTATAGTTTGATGCTGTGACGTCTTCATTCTGCGACAACCGGAAGGGGTTTGACAGCAGTGTTTTACACATGGCGGCAGCTCCGAGtttaaacagatgatttctttaaaatgaaaccatgGCAGACAGAAAACTACCGGAGTGGATGTCAGATGGAATGAAGGACACAGGCACCGAGCACAGCAAGACTCTCCCAAGGTTCCACAAGAAGAATATCTTAGAAGATAGTCTTCCTTATCTGGAATTCGCCGGCTCTGTCGTTTACAGCTACGAAGCCAACGATTGCTCTTTCCTGTCAGAGGATTTAAGGACCTGCCTTGTTCCCGGGTCAGCCGTGGGATTTGATATAGAATGGCCTCCCTCTTTCATCAGTGGCAAAGTGAAGAAGGTCGCTATGCTTCAGTTGTGTCCTTCGGAAGAGAAGTGCTATCTCTTCCACCTCTCTTCTATGTCAGGGTTTCCCTCTGGCTTGAAGAGGCTGCTCGAGGACCAGACCATCAAAAAGGTCGGGGTTGGAATCGAGGGAGACATGTGGAAACTGATGAGCGACTTCGACATCAAACTGAAGAACTTTGTGGAACTGGCAGACTTGGCTAACAAAAGACTCAGATGTGTGGAGAGGTGGAGTCTAGACGGGCTGGTGAAGCATCTGTTCAACAAGCAGCTTCTGAAGGACAGGGCGGTCCGCTGCGGCCACTGGGACGACTTCATCCTGACCGAGGACCAGAAGAGATACGCAGCGACGGATGCCTATgctgGATTTGTGATCTATAAGAAACTGGAGACTATGGACCCAGGAGGGGAGACGTCAGGTCTGGATGTGAAGGAAAGGCTTCTTCAGATCTCCAGTGAGATGCAGGATCTCGCCCAGCAGATTCCCCATCAAACCAGTGGCGCTGCAAACAGCGCTGCGGCCCTCGTGGATGGTTTGGCGCAGGGCCTGGGGGCTCTGAGGAGCCTGCTGCTGGGGGGACGCTCTCAGATTGTGAAAGATGAGGAGACCAGTCCTCAACGGACCAGAGAGGACAGCCGCCCCCCAGCGGAGAACGAACAGCCTGGCGGTGCGGCGGGGGGGGCTCCTGGCAGACCCTCGAGCCAGGATCCTGATCGCTTGGACGTGGACCTCTTCAACGACTCCGCAGCCGCCCCAGACAAGGAGCCTCAAGAcgtcccccccgccccccgagAGTGCATCATGTCCTTGGACATTTCTGAGTACGAGCTGCAGGTGATCGAGAGGCAGGCCATGCGGGAGGCTTTTGAAGAGGAGTCGATTCTGGCGCACCAGGCGACGGTGGGGACGGACGAAGGATCCGATCTCTCCTACGTGGTCGAGAGTGACGAAGAACTGGAGAATGAAATGCTTCAGTGTGTGGACGAGCTGGACAGGttgaacagcagcagtgaagaTCTCCAGAGCGGGGGGCGGGCGGACGAGGACGAAGACGAAGTCatcgaggaggaggaggaggaggaggatgaggaggaagtGTTTGaTCCTTCTCTCCCGGGACCGAACTCGAAGCAGATGAAATGCCTGAAGATGTTTTTTGGACATTCTGGTTTCAAACCcgTACAATGGAAAGTGATTCACTCCGTTCTGCAAGAGAGGAGAGATAACCTCGTCGTCATGGCAACGGGTTACGGGAAGAGCCTCTGCTTCCAGTTCCCGCCCGTGTACTGTGGGGGGGTGGGCGTGGTCATCTCGCCTCTTATCGCCCTCATGGAGGACCAGGTGCTGCAGCTCCAGATGTCCAATATCCCGGCCTGTTTCTTGGGATCGGCTCAGTCCGAAAATGTTTTTATGGACTTGAAAAAGGGGCTCTTCCGGGTGGTCTACATGACTCCAGAGTTCTGCTCGGGCAACGCGGCGCTGCTCAAACAGCTCGACAGCGATGTGGGGATCACGCTGGTGGCGGTCGACGAGGCCCATTGCATCTCTGAGTGGGGCCATGACTTCAGGGGTGCCTACAGAAACCTGGGGTTCTTCAAGAAAGTACTGCCTCATGTTCCCATTGTGGCGCTGACGGCCACGGCCAGCCCGTCCATCCGGGAGGACATTGTGCGCAGTCTGCACCTGGACGACCCCCAGGTCACCTGCACCAGCTTCGACCGGCCCAACCTGTGCCTGAACGTCGGCCACAAGACCGGGAACATCTTCAGGGACCTGCAGCCATTCCTCATCAAGAAGAAAGCATCTCGTTATGAGTTTGAAGGCCCCTCCATCATCTACTGCCAGTCCAGGAAGGCCACGGAGAAGGTGTCGGCCGAGCTGTCTAAGCTGGGCATCTCGACTGGCGTTTACCACGCTGGCATGGGCATCAAGAGTCGCAGGGAGACGCACCACAAGTTCATGAGGGACGAGATCCAGTGTGTGGTCGCCACGGTGGCTTTCGGGATGGGCATAAACAAGGCCGACATCCGCAAGGTCATCCACTACGGCGCGCCGAAGGAGATGGAGTCCTACTACCAGGAGATCGGCCGCGCCGGGAGGGATGGGCTGCCCAGCGCCTGCCACGTGGTGTGGAGCTCCTCGGACATGGCTCTAAACAGGTATCTCTTGAACACCGTTATTAGCGACAAGCATCGCGGATATAAGCTCAAAATGATGGCCAAGATGGAGCAGTATCTGAACTCGCCCAAGTGCAGGAGGaaACTCATCCTGTCCCACTTCGAGGACAAGCAGATGCGAAAAGCCACCTCTGGCATCATGGGGACAGACAGGTGTTGTGACAACTGCAGGACCAGGTCGGCGCACAACTCCACGGTGGAGGACAACGATCCCGGCCTGCATGACTTCGGGAAGGAAGCTGCGCAGCTCATGGGGGGCATCGACGCACTGGGGGGCAAGTTCGGGGTGTCCGTCCCCATCCTGTTTCTGCGTGGCTCTTCCTCCCAGAGGCTGCCAGCCCGGTTCCGCAATCACCCTCTCTTCGGCGCCGGGAAGAACGTCTCGGAGCCATTCTGGAAAGCGCTGGCCCGTGCTCTCATCTCCGAGGAATACCTGAAGGAGGGCTCCGGGGTCCACAAGTTCGCCACCATCTGCAGTCTGACTCCCAAGGGTAAGCGGTGGCTGAGCAAGTCAAGTCAAACCCATCAATCCCTTCTGCTGCAACCGACCACCGATCTGTGCGCCAGGATCTTCACGGTGCCGAGGAGGAGTCCGGCTCCGCCCCTCACGGCCTCTCCCTCGGCCAGCCAATCAGCAGCGGCTCAGCAGGTCAGCATGGAACTCTGGGAACGGAACATCGTGCCTTTGATCGAGTGTCCCaaaTCTAAGCTTTCCCAGTTTTCACAAGCAGAAACCCATACTTCTCCCAGAACTGTAAGCTCTCCATCGAAAAGGCCTCGGGCCGCCTCGGTGCTGAAGTCCCCCGGGAAGCAGCCTCCTTCGCAGCCCCAGCCCCCGGCCGTCTCCCCCAGAGAGCTGGAGCTGCAGGGGGTGCTGTACGGCCAGCTGGTGGCGGGGAGACAGAGACTGGCCAGTGAGAAGGACATTCCTCCAGCTGTCCTCGCCACCAACAAGATCCTGCTGGACATGTCGAAGACACGGCCCACCATGGTGGCCAGTCTGAAGATGGTGGACGGAGTGTCGGAGGCCAAGTCGGCCATGTTGGCTCCTCTCCTAGACACCATCAGCAGCTTCTGCCAGTCAAATGGCCTCAAGGTGAACGTGCTCCCCGGCGCACCACCGTGTGCCGAGAAGAGCAGTCCCGAGCTCAGGTCTTTGTATACCGCCCTCCCCGACAGCGTGAAAATCACCTACAGACTCTTCCAGGAGCAGGGCCTGAGCGTGAGGACGGTGTGTGACAGCAGGAGTCTCCCGCTGGCCGTGGTGGGCTCTCACCTCCTGCAGGCGCTAAAAGCGGGATACCGCCTGGACACCGAACGCGCTGGACTGACCCCTCAGATACAGAAGACCATCGCCAACATCATCGCAGCTCCGCCCATCAGCTCCGATCTGGGCAACATGAAGAAGATCAGAGAGCTGGTCCCCGAGGAGATCGACTCGCATCTTATCCACCTGACTGTGGCGCTGCTGCAGAAGATGGGGGGCGCTGTCCCGCAGGCTGGGAAGAGTGAGAGGATGCCGGGGCAAAGCCTGGCCTGGATACAGTCCAAGGACCAGACCGTCCAGAGAAGCGCCCCTCCGCCTGCCCCCGCCCAGCCctgggaggagctggaggacaTGGAGGCGATCGAGGACGCGCTGCTCGGAGAGATACCCATGCCCGACGCCGAGGTGACTGAGAGCCTCCAGTCCAAAGCCAAGTCATCCCGGTCGGACGGCATCCCGGCCCAGAACCCCGCCCTCCATATGGCTTCCTGGAACCAGAAGCAGCTGGATGACGACACCCAGCAGCTCTTCTGTGATTCGCCAGTGAAGGCTGTGAGCCAGCCGGTGAAGAGAAAGGTACCCGAATGGTTTGAGGTGCCAAAAGAATGCAAGTTACCTCCCGCCGCCTCCAAGAAagacaagagaaagaaaggccTGTTCTCCTAGCCCGGGCCCTGGGAGCCTCAGCCGGAACCGGACCTCTCCTCTCCTGGACACACCGGCCTGAAGATCTGCCTCCATTTTTTTGATTACCCTTGCCCCCGTAGTCTAGAAACGCTTGGGGACTATTGGATGTGACTTTTGCAAATGGGGCACCGATGCCAGCCCCCGACTCCTCTCCCACATAAATCCGACACCGCCTCATTATGAATGTCCGCTCCTCTGCTCCTCACGCCAGCAGAAGCTCCTAGTGATCGAGGAGAGCACACCTCGCCTGTGTGCGTCATGCCTCAGGGCGTGTGGAGGATAAAGGGCGATCGGTTAAGAGCAAGAGTGTTGAAAATCTTAATGCTCACTGCTGTGACGAGTCCCAGGCCCTCAGAGACAAAACGGAGAATCCAGGAAAGGCCGTGGTGAGGCCTTACAGGACCGTGGGGACTGGGGACGGCCGTGGCTTCAGTCTTGGAAACTGCAGTAACCATAAGGAGGGATTTATACGGGCATTGTGGGCTAGCCCCCCCATCACTCGAGCGCCCAGCAGACCGGCGCAGAGGTTTGCGCTGAACTCCGATTGATTAAGAACGTCACAGTGGGGTCCTTCTTAAGGGTGCTGAGCAGCCGTCCTTCACAGCCAGGAAAAGACGTGTGGCTGACCAGGCCGTCGAGTGAAACGTTAGTCAGGTTTCGTACACCAATTAATGTTATGTGTTTTGTGCATACTTTACAAAAAGTATATTCCTAAAATACATAAGctgctgtaaaaatacattccCACAATACTTTAAATGTCAATACAATTAAGCTCTGCACggaaactaaaaaaatatacaaaatattgaaatcttGAAATCAAAAGTGTATTTCTATGAATAAATGGTTAATTTCG

Function

GO: NA

KEGG:

id description
K10900 WRN, RECQL2; werner syndrome ATP-dependent helicase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00010649 True 5437 mRNA 0.57 36 38253115 38276767

Neighbor

gene id symbol gene type direction distance location
AMCG00010651 NA coding downstream 15408 38222463 ~ 38237707 (-)
AMCG00010647 NA coding downstream 95691 38148135 ~ 38157424 (-)
AMCG00010646 LOC101066920 coding downstream 115911 38135266 ~ 38137204 (-)
AMCG00010645 NA coding downstream 139943 38087401 ~ 38113172 (-)
AMCG00010642 LOC106533044,LOC107378076,LOC108411468,LOC108257813,LOC106916349,LOC102218377,LOC103155534,LOC103457917 coding downstream 320680 37930237 ~ 37932435 (-)
AMCG00010657 NA coding upstream 59269 38336036 ~ 38343554 (-)
AMCG00010659 mat2al,LOC100699062,LOC102202437,LOC101466580,LOC102780929,LOC107732036,LOC103371477 coding upstream 67354 38344121 ~ 38346861 (-)
AMCG00010658 hnrnpd,LOC102781216,LOC102314153 coding upstream 79656 38356423 ~ 38370024 (-)
AMCG00010668 LOC107558253 coding upstream 103760 38380527 ~ 38385701 (-)
AMCG00010663 scd5,LOC106562327,LOC106568335 coding upstream 109765 38386532 ~ 38401883 (-)
G82126 NA non-coding downstream 755002 37497718 ~ 37498113 (-)
G82125 NA non-coding downstream 758402 37492723 ~ 37494713 (-)
G82020 NA non-coding downstream 893293 37357333 ~ 37359822 (-)
G82017 NA non-coding downstream 896912 37355758 ~ 37356203 (-)
G82002 NA non-coding downstream 969800 37282917 ~ 37283315 (-)
G82252 NA non-coding upstream 8988 38285755 ~ 38287535 (-)
G82347 NA non-coding upstream 241898 38518665 ~ 38526795 (-)
G82362 NA non-coding upstream 349759 38626526 ~ 38626937 (-)
G82435 NA non-coding upstream 527059 38803826 ~ 38828301 (-)
G82436 NA non-coding upstream 543739 38820506 ~ 38820945 (-)
AMCG00010623 NA other downstream 844966 37405880 ~ 37408149 (-)
AMCG00010602 NA other downstream 1569297 36677697 ~ 36683818 (-)
AMCG00010597 ercc8 other downstream 1611422 36627901 ~ 36641693 (-)
G81716 NA other downstream 2536443 35714951 ~ 35716672 (-)
AMCG00010532 ppic,LOC107713556 other downstream 4148443 34098346 ~ 34104672 (-)
AMCG00010666 NA other upstream 146712 38423479 ~ 38425067 (-)
AMCG00010664 NA other upstream 181007 38457774 ~ 38465061 (-)
AMCG00010667 NA other upstream 200143 38476910 ~ 38483422 (-)
AMCG00010679 ppwd1,LOC107558664 other upstream 358292 38635059 ~ 38636502 (-)
G82392 NA other upstream 378151 38654918 ~ 38688260 (-)

Expression


Co-expression Network