G82020


Basic Information

Item Value
gene id G82020
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 37357333 ~ 37359822 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU102309
AGGTCATTGCCGAATAGAAATTAACTGATATCCTTTGCAGGTAACAAAAGGCCTAAAACATCGTTCATGTCTGTACCTCTTGTCCTGGTGCAAGTCGTCCTGCCAGCACTTCAGGCTCAGTGAGGTCTTGCAGAAGCTGCTGAATTTTATAAGGAGAACAGTCTTCTGGAAACTCCTGATCCACCAGCTTGTTCTCTTCATAGAAAGTGATGTCTAGAATAACCTATAAAAGAACCTAGTTAATTAGCACCTGCAGGACTTCGgcttatttcttcatttaattacGAGAACCTCAAAGCCCGACAAACAAGAGACCCCTGAATCCAATACTCACCGATGTGCGTAAAGGAACAGAAAAGGCATTCTGCAGACTATTGCATTGAGTGTGTGATTTCTTTTGCCATTGTAAGAGGTTTAAGAGCTATGATTTACTCAGTGCTAAACACATCTGAATTGTCCTTCATTGGCTGATAAGAAATTGAAAAAGGCTCTGATAATCATTGCTTTACTTTTGTCTtagtcattttttaatttttattttgcaatagaCAAATTACAATAAGGactgtttatataaaaagtCCCAAGTTCTTCTGCAAGTGACCCCACGGGCAGTTACGGAAAAGAAAATCACTGCACTCTTCAACGATTCATACGTACAATATATAATGCTTGGCCATAAATAATCATGCATACTGTCAGTTTTggcaaagaaaatacagtattCAGAGCTTCGAACACAAGCCTAGTCTGGATCCCATAAGAACATGCTTTCAATTAACTACCATAGTTTTCTATAACTTTGGAGATTCCAGTCTTGTGAGACAATATACTGcatattgcattttttcatttgattgacTGATATACCTGTGTGTAATCCTGTAGCAGTTTTGGGAGACTGTTACTTTCTCCCCCTTGTCTGTAATAGTTTTTCAACTTGTCTAGTATGGCAGATGCATTCTGTAAATAGTCATCAtctagaaaaaaatacagtatattaattaCTTGTTCAAGGAAGCATAGTTTAGATAAATATCAGAGCAGAGTATTGATTATACTTGGATTATCATTCAAAtgctaaaaatatttaaacagcacTAAGtctttaaaaccaaaacagccTCATGGCGGGGCATCAAATCAAgctaaaactttaaaaatataaatgatctaaaaaaaacttaaactgATGCTTTACAGGAGGGTGACATTTTTAAACGCAAGAAGACTCTTCAAAACgtttaaatcaaataatgatTTATCTCAAATGCATAGAGGCAGCATACatgagaaaaaatgaaattaaaatgtcaaaagaaaCCACATGGAGGTGGGGGGATGTAAAAAGTACAGGGACTTTCAAACGTAAATAGTTAATTGCTTTGTTAACTGAAAAGAAGGAATTATAAGCCATTATAATTGAGAAGACGTGCAACGTTTCAAAATGTATACCCAGTATGGCcgattatgaaaaaaaatatcgTGCAACCTTTGCAAACTGAaatatacatctttaaaataacttgAGTGCACAACTTGCCATGTGTGTTTCTCGTAAACATAAGCCAAATATCACTTACATTAACAAAACTCATTACCCAGGATTAACTGAActgtaaaatacaacacaacacacgaGCTGCACTGTTTTGCAAATGTCAATCtgatcacacaaaaaaacactttccctCAAAAAGCAAACCGGCCTCAATGAACCTGATCACAGGGCTGCGCACATCAGCAAGCCAGGCGAAACAACTATCATCTCCAAAACGTCACTCCATTACTACTAATATAcacatgtttatattatatatataaaaaaataaaatggtgaaaCAACGCAGTAGGCTGGTAATTTCGGAAATGTGACGTAGTGCACACGTTCACGTCTATGTTTACTACAGAAGCGCTTTAGCAGGAGTAGGCCACGCCAGCATCCTGCAGCAGCAACAAGCCTTCAACCAGAAACATCCCTAAAGAGCCTGCCGGGCACCAGCCCCACCACAGCAGCCCCATCTGACGGTGCGAATACAGCGCCAGCGATGTCAATTGAGCGATAAGGGCAGAGGACAGGACCTTCCCGCAAACCGGGCTTTCAAACACAGCTGTCGTTGATGTTGATGCTGCTGCTCCGGATCTCACGTCCCTCCGCGACGAGCCCCCCGCCCCAAGGACACACACCGGAGAGCCCGCCGTCTTTCCCCGTCGCTCGGGCCGCACACGTTACCCTGTTTCTCCATCCTGAGGCTGGAGCATTTGCTATCCAGCTCGAAGATCCTCCTCTCCAGCTCGAAGCCCTGTCTCCTGCAGTCGTCAGCCATGATGGAAACC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU102309 True 2337 lncRNA 0.40 2 37357333 37359822

Neighbor

gene id symbol gene type direction distance location
AMCG00010618 oxct1,LOC106580620 coding downstream 13911 37322454 ~ 37343422 (-)
AMCG00010619 oxct1a,LOC107711896,LOC107686394,LOC107667551,LOC107565986,LOC105894181 coding downstream 42798 37305723 ~ 37314535 (-)
AMCG00010616 plcxd3,LOC107600019 coding downstream 58117 37283377 ~ 37299216 (-)
AMCG00010617 NA coding downstream 78014 37268015 ~ 37279319 (-)
AMCG00010614 NA coding downstream 151252 37204218 ~ 37206081 (-)
AMCG00010625 LOC107751863,LOC107568600 coding upstream 52533 37412355 ~ 37449562 (-)
AMCG00010624 NA coding upstream 91300 37451122 ~ 37463163 (-)
AMCG00010628 aph1a,LOC100304952,LOC108427283,LOC105021718 coding upstream 143604 37503426 ~ 37510451 (-)
AMCG00010629 tpm2,LOC106571564,LOC107670037,LOC107737084,LOC105894628,LOC108427282,LOC103044350 coding upstream 159373 37519195 ~ 37544081 (-)
AMCG00010630 NA coding upstream 191150 37550972 ~ 37554566 (-)
G82017 NA non-coding downstream 1130 37355758 ~ 37356203 (-)
G82002 NA non-coding downstream 74018 37282917 ~ 37283315 (-)
G81979 NA non-coding downstream 112219 37242439 ~ 37245114 (-)
G81973 NA non-coding downstream 125958 37230447 ~ 37231375 (-)
G81957 NA non-coding downstream 228067 37128893 ~ 37129266 (-)
G82125 NA non-coding upstream 132901 37492723 ~ 37494713 (-)
G82126 NA non-coding upstream 137896 37497718 ~ 37498113 (-)
G82252 NA non-coding upstream 925933 38285755 ~ 38287535 (-)
G82347 NA non-coding upstream 1158843 38518665 ~ 38526795 (-)
G82362 NA non-coding upstream 1266704 38626526 ~ 38626937 (-)
AMCG00010602 NA other downstream 673515 36677697 ~ 36683818 (-)
AMCG00010597 ercc8 other downstream 715640 36627901 ~ 36641693 (-)
G81716 NA other downstream 1640661 35714951 ~ 35716672 (-)
AMCG00010532 ppic,LOC107713556 other downstream 3252661 34098346 ~ 34104672 (-)
AMCG00010509 fem1c,LOC106580179 other downstream 4357334 32993287 ~ 32999999 (-)
AMCG00010623 NA other upstream 46058 37405880 ~ 37408149 (-)
AMCG00010666 NA other upstream 1063657 38423479 ~ 38425067 (-)
AMCG00010664 NA other upstream 1097952 38457774 ~ 38465061 (-)
AMCG00010667 NA other upstream 1117088 38476910 ~ 38483422 (-)
AMCG00010679 ppwd1,LOC107558664 other upstream 1275237 38635059 ~ 38636502 (-)

Expression


Co-expression Network