AMCG00010662


Basic Information

Item Value
gene id AMCG00010662
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 38425843 ~ 38443289 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00010662
CCGGCCTGAAATAGAAACACGGCACATCCAGGCGGCGCAGCCCGCACTTGAAGCGGGGAGAGAGAGCTCTGATCCCCGCGCCGTCCCCGTCCGCGTCGCGCTGCGTGGAAATGCACAAGGGATAAGCCTTACGGTTAGATCCACGGGTGTAATCTGGCGGATTGCTGAGAGGCCGAGCccaggagagtgagagagaatgGAGGTGGTGTCGCCGGAGCTGAACAGCCTGCTGCCTGACGAGATCATGGACAGCGAGGCCATCGTGGTGGTGGAGAACCTCCCGGCCGAGCCACCCCCCGCCGCTGGGGAGTCCGAACCTGGGGAGGCGCGGGGAGAGGCGCCGGTGCCCATGGAGACTGAGCTGCCGGAAATCGCCAGCCTCCCCGCCCCCCCGCCACAGAAAGCCCAGCTCCTGGTGGCCTCCACCTCTGCGGACTCGGGGGCCCAGTTGCTCCTCGCCCCCTCCAGCTCGGCCCTCGTGAAGCCGGCGGTGCCCAAGGCTCTCGGCCCCAAGCCCTCCAGTCCCGGGCTCGGCGCCGGCCTGCACAAACTCGGCTCCCCCTTCACCTTCACCAACCACCAGATAATCCTCAACAAGGTGGCCACGTCCTCCGGTGAGGTCAAGCCGGCCACCACTCAGGTCATCAAACAGGAGGGCCAGAAGCTGGTGGTCACCACCCTCGGCAAGGCCGGGCAGCCCATTGTCCTGGCGCTGCCCCACTCCAGCCAAAAGCCTGAGGGCTCGGGGGATGGCAAGCCCCAGCCCCAGCAGTACAAAGTGGTGACTATTGGGGGCAGGACTGACCTGAAGCCTGTCATGGGAATGCAGGCGGTGAGCTCGGCCAGCCAGATCCTGGGGACGTCCCAGCACTCCACCCTGCAAGCCCAGCAGCTCAAGACTGTGCAGATTGCGAAGAAAACCCAGACGTCCACCACGGGACCAATGATCACCAAGTTCATCATCACAAAGCCACTGAACAGCAAAGGCATGTCTGGACAGACGTCGGTGTCTCCGGTGATCTCAGGACGAGTCCTCTCCCAAAACGCCCCAGGGACGCCCCCGAGGACAATGTCTATCTCTGAGACGGTGGTGGGCGCTGCGTTGAACACCCCCCAGAGCCTCTCCAGCAGCAAAATCGCTATCTCCCCCCTCAAGTCCCCCAGCAAGCTGACCGTGGTGTCCCTGGCTTCCCAGTCCCCCAGCTCTCCCCAGAAGCCAGTGGGCGTCCCTCTCAACGTGGCGCTGGGGCAGCAGATCCTGGCCGTTCAGCAGTCCAACCCCTCCTCTCCGGCCAAGGTGGTGTCCAATCACTCGACGCCCCAGAGCGTGAAGCCTGTCCAGACCATGACCGTGGGGAGCGTGGGAACCCCTCAGTTCAAAACAATCATCCCTTTGGCCACGCCGCCCAACGTGCAGCAGATCCAGGTCCCGGGGAGCAGGTTCCACTATGTGCGCCTGGTCACCGCCTCCACGGCCAGCAGCCCGGCCCATACCGGCAGCCCCAGCACCAACTCCCACTCCCTGCAGCAAGCCAAACCCGTGGTGGTGAACACGACGCCCGTCCGGATGTCCGTTCCCATCGTTCCAGCACAGACCATGAAGCAGCCCAATCTCACCAACCTGCCCCCCGGCACCGTCCTGGCACCGGCCCCCGGCACCGGGAACATGGGCTACGCGGTCCTGCCGGCCCAGTACCTCCAGCAGTCCACCTTCGTGTCCATTGCGAGCAACACGGGCTTCGCAGCATCAACTGGTATCCAGACGCAGGCCCGGCTGCCTCTCAACGGGTTGTCTCCATCGGATTCTGCTTCGAGGCCGCGGAAACCCTGCAACTGCACAAAATCACAGTGTCTCAAACTgtACTGTGACTGTTTTGCCAATGGGGAGTTTTGTAATAGCTGTAACTGCACGAACTGCTTTAACAACCTTGAGCACGAGACCGAACGGCTAAAGGCTATAAAGgctTGTCTGGACCGGAACCCTGAAGCCTTCAAGCCGAAGATTGGCAAAGGGAAGGAGGGCGAGTCGGACCGCCGGCACAGCAAGGGCTGCAACTGCAAACGCTCGGGCTGCCTGAAAAACTACTGCGAGTGCTACGAGGCCAAGATCATGTGCTCCTCGATCTGCAAGTGCATCGGCTGCAAGAACTTTGAGGAGAGCCCCGAGCGGAAGACGCTGATGCACCTGGCAGACGCGGCGGAGGTGCGGGTGCAGCAGCAGACGGCCGCCAAGACCAAGCTGTCCTCACAGATCTCGGACCTGCTGACCAGGACCACGCCCGCCGTCACAAGCGGGGGGGGCAAGTTGCCCTACACGTTCGTCACCAAAGAGGTAGCGGAGGCGACGTGCGAGTGCCTGATGGAGCAGGCCGAGAAGGCGGAGCTGAGCGGCCGGCCCCAGGCGGCGGCCGAGAGGATGATCCTCGAGGAGTTCGGACGGTGTCTCATGAGGATCATAAACTCTGCAGGCAAAGCCAAGACAGACCCCTGCCCCATCAACTGCTAGACCCTCCAGCGGCAGAGCGGTGCCAGGCACGGACAGCAGACCCCCGGGGGTGGGGGCTGGCGGAGGGAGCGCGGGGACCGTGGCGCGGGAGGGACCGACTCCCAGGCCGCGCGTTGAAGGAGCCATCCGCCCCGGTGACGGAGCGGTCTTGTGTTTGGGGCTTGTTTTAGAGTGACCTGATAATGCAACGTGTACAAATtcaaatagatattttttatgGAATTTTTCTTCGGATCTTTTTGATTTCTTCTCATCATGCCGTTCCTTGGGTCGCTGACTGACCCAAGGGCTCtgtttccatctctctctctctctctctctaaggaCAGATCATTTTTGGGtggtaggtgtttttttttttttattattacagattCTTGCTGCTTAAGTTTCTTACCCAGGATGCACTGCTCACATTCACATACTTAAGACCCCTTTCATCCTTCGGCCCCTTCAGAGCTCACCCAAGTCCGATAAATTAAGGTTCCcaaaacatacagtatgtagTGAGTACTGTAGGATGGTGGAACGCAAATACTGGAGAGAAACCAGCATTGAAGCGTGTCGTCTGTTCTGCTTTGTTTGGGGTTTTGGGGtttttcggttttgtttttaaagagcagTATTTTTATTGCAGATTAAAGTGAAAGTGAGAATGCAGGAGAAAATAGCAAATGAAGCGCttgagtgaatgaatgaatgaatgaatgaatgaatgaaggaatGGCGGCGATGTCTGTAGGAATCCCACTCCCACGCCCCTGTGTTGTGCAGGAATCGGGTGAGCGTTTACAGATTTTACAGAGCCTCCCGTGCCATCGATTACTGATAAGCTAGACCTccctttttaatcattttaaagtgGTAAGCAGACGGGCTGAAGATCCCCAGTTACACGGCTGACAATTTGTATAGGATCTCGGTGAACAAGTAGGGCTTCTGAAGGCTGGGTCTCCAGGCACGTTTCCAATCATAATACAATCCCGATTCACTGTCTTCTATTTTTTCATGGTTATAACCCCAGATAAAAGGTCGAGGGAGATCGTTTTGCAGGTCGAATGTGGTGTTGGTTGCCCAGTCGGCGCCCACACATCCTTACGAATATCTGTAAGGTTTTGTGGTGCCGTCTTGGCAGAATGCAAGGAGCAGCTCCAGTAGGCCTCTTACTTCTGCACAGACTGAGTGGAAACATTTGCTCTCCGTTACCTCCTGTCCCACATACGCTGCCAAAAGTGTAAGGATACGGCCTGTAGTTGGAGCCCATGGCGGTGCGCCACAGTGATGTGTGCCTGTTATTACATCAGTGGCAGGGAGTATCCACTGAAAGAACAGGGCTTGAAAAggaaacttgtttatttttgcagaaatTAACACGTGTACTGTTGAAAAGGCCTGTTGTGACATAGCGGGTGAGTGCACAGATTACCGATTTAAGAAGTCGCTTACCCCTCAGTGGCTGCAGTGTATCTTTAACTAGGAGACGTACCTAAGAGGAGTTTTTCAGGGAGTAGAGCAAAGAGGGACAAAGCAGGACTGCCCACGTCACCCCCGGCTCAACTCGTGACATAATCTATGGCTTTAAACCGCAGACCCGTGGTGCAGTGCAGCCGAAAGCAATCTTCACTTTTAATAAGCAatatcataaaaatgctgctctCATGAATAATAGAAcaagtaatgcattttaatgggCGATTATCTAGGTAGGACTATTGTGACGTGATCATGCTGTTGGCACTTTCATATAATCCTCTGTTCGGGCTGATGACGCTCTGCCCCTGCTGGTCTCACTGGAGATGGACCCGACTTCCTCTTACTGTGTGAGTGTCTCGAGCCACACAGGTGTTTTACCCTTAGTTTAAAACTTGGACTTAAACTTAAACTTTAAAACTCTGAATCCCCTGTGTGTGGCCGGCCGCTCCGTCTTGGGCAGAACATCGCCACACTGTCCTTCACTGTTAGCTGTCATCACACTCGTCTGTGTTTCTATTGAAGAATGTAAAATCAGTGTGAATCTCAAAGACTGATCTGCCTTAAACTATCTTTTTCCTCATCAATGGCATCCGTCGATAACATTGTCAAGATTACGAACTACATTAAGAATGTAGCTATGAATTTCTCTCTCGACacgtttttaaagtaaattaaaaaaaaaaagagtactttgctctctgttttttgttttgcttcttactgtctgatgtatttatttataatgaagggAATCCCTTCCTCTGTTGAGGCCGAAATTAAAAGATGCTTCAGTGTCTCCCGACACCTTGCACAAGAAGGTAGTGGGTCTGCTTTTTAAAGGTCCTGGTGGGGGGCCGGGGGTTTGGATTGTAAAACTCGACAGTGAGTGGAGTAAAGTGTGGGCTCCCAAATATCCCTCTAGAGGCCTGACGCCACCGCCATTTTGTGCGATAGTGTGCAGCTTTGAGATGGGCTTTTTTAACTTGCTGATTTCCAATCACTTTAACCACCTCATTCCCATACACACACCCTCTCAGCCCTCTCCCAGATGCGAACTGGAACAGGAAAGTGTTCACACGCAGTTTTTCCGACATGCAGGCTGCTCCCGTGTCACCGGACTGCGGCAGCCGGAGCAGCGTGCTGCCCGGCGTGTATCGGACCCTCTGTATCGGTGAATTACTGGTAAGGTGGCCCCGTCTCCGCCCTGGACTCCACTGGCTTTGGGTTCTTTCAGGCGGTGAAGATGTTCTGGTGGCTCTGCGATGCCTGTACTCTCTGACGGACAGACGGGAACCTTTGAGTATCCCGTAACCATTTGTGGCACCGAACTCAATGTCCAAACACAGCCCTGACACCAGTGTTTAGTTCCGGAGAGTGCCTTTGGTTGAGCTGGGAGTGAACTGGACTAttactgtggaaaataatgGCATCCCCATTTTAATGGGGGGTGGGAACGGACACATGGAGACCCATTGGTGAACACCGTAAATAGTCATACAGCAGTATTTTTAAcctttccccctccccctgtcATCATATTGCTTACATTTGATTACCAGAGGGTGTGTGAACATATTATATGCTTGCATGACAAAGGAAATGCAGTGATGCTCTTGAGAGAGCTGTTGAAAAGGCAGTCTGGATTCCACAGGCGTGCGTGCTGTCCAGGTCGGAGGCAAAGCTCCGACATGGCAGCCTGCTCTGACCCACTGCAGTGTCCATCCTGTCCCCATGTGCGCTTCATTTGGGCGCTTACTTGATGATCACCATGACATATTactaatattagtagtagtagtattatgaTTTTGCTCAACGATGGTAGAGTTATAACAATACCCCAGCCTTAAGCTTCACCTTTGCTCAGGGCCTTTAGAAACCTGTTTCCCTGCAAGTAGCTGGCTGCTTGGCATTGTACCACGGTAGAGAAGTGTGCAGTGATTTGGAAATGCTTCCTGTCTGCGGTTGTTTTGGTGCTGTGGTGTTTTCTCCTCTTCCCTCCTGAGAGAGAGCGCATGTCATGTAGTTTTCCTGGGTCTTGGAGATCCTCGGTGTCGCACCATTCTTCTGTTCTGGTGCTACCTTGATGAGAAGAGATCCTCGGGGTTGTGCTGGACTGGGCTCTTTAATTGGGCACTGCGTTGGCCAATCTACACCATTATTTGGATTGATCTTCACAGAAAGTTTACCATTACTACCAGTGTCTCGGGTGTAACGTGCATCTTCTTAATCCATCTCTGTACAAAGAGGTTTAAAACTATTTCCACCGGAGATACAGACCCTTAATACAGTTGGGGCACTTCAGGGGGGAATATCATTCTGAGGCACAACCATTTCAAGTTCTCGATTTGAGCCGTAGCAGTAAAGTGCTCCTCTCCACAGTTCTGAGTGACTAATTCTTCATGTGAGAGAAATGTTCTTGCATATACGAAGAAGGCTTCACCCAGCTGATTAACTCGCCAACTCCAGTCCAGTACAGATGTGGCGTTGATCAAAGAGGCTAAGAATAAGAATCAAACCAATAGGTGCCTACTTCAGCAGCTCCGTGCCTTTGACTCTGCGCCTCAGCGGTGTGGTTCACTGGGACGGTGTGTTGTGGTGGAGCTCCGTGCTGGAGCCCACTCCCCCCAGGCCGGCTCATCACAGTAGCACTGGAAATGAAGAAACGGGAGCCCAATTGGACAAGTGAATTAAGCAATCCCAAACCTCATGATGCCCCATTCATACTACCTATATAAAGTGGTAtcagcatgttgaaataaataaaagttatgaAATCTTGTGAATGCCACGAGCATCTCCTAGTGCCAGTTTTTCTTTACTCACCTTAACCTTGTCTGCCACCTTCACACTGTGTCATTTGAaaagcaggattttttttttgggggggttttacatattaaaaaagggaacaaaccaggtttaaaacaaacatgaagcGCAgagctttttcttatttttttcctctccattTCCCCCCCTCTGGTCTGGCAGTGAACGCCAGGAGTGACTGGGTCGTTGTGCAGCGGACGGTCCAGCAGTACAACCTGCTTCGCCTGTCAGGGAGAGCGAAGCCatgctgtataaatgtaaattagtgTAATTGAATACATTAGCGCTGCTTTGTACTTTATCGAGGTTTAAAGAATTGtaatattcacttttttttttttcttttttttttacaccgaAGCTCTGTACTAATATGtgaaagttatatttttttctgcatctctGTAACGTGTATTGAAGACCTTGTGCGACAAAATCTGTAGTGTTTGGATTTGTAGATTGTGTATGTTGGTGTGACCACTGCGTGTGTTACTTTTGAAGGTGGAATcaaatgttttgggggatttattttattttatttttccaacctgctttgtaaacatttctgcttttttgtctagagaattatttaatttatcaatCTGTCATTCTTCCATTAAATGAGTTACAAAAAGCATTATGACAATATAACACCTACTATCACTCAGAATTAAAGagataatttttaattatttgcaacCTTTAACAAAAAGATTTATATTTAGTGAACATACTTAAAATGTTCAGTGAGTCTATATTGTAAGCAAAc

Function

GO: NA

KEGG:

id description
K21776 LIN54; protein lin-54

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00010662 True 7580 mRNA 0.51 14 38425843 38443289

Neighbor

gene id symbol gene type direction distance location
AMCG00010665 NA coding downstream 4183 38403007 ~ 38421660 (-)
AMCG00010663 scd5,LOC106562327,LOC106568335 coding downstream 23960 38386532 ~ 38401883 (-)
AMCG00010668 LOC107558253 coding downstream 40142 38380527 ~ 38385701 (-)
AMCG00010658 hnrnpd,LOC102781216,LOC102314153 coding downstream 55819 38356423 ~ 38370024 (-)
AMCG00010659 mat2al,LOC100699062,LOC102202437,LOC101466580,LOC102780929,LOC107732036,LOC103371477 coding downstream 78982 38344121 ~ 38346861 (-)
AMCG00010678 adamts6 coding upstream 120787 38564076 ~ 38607856 (-)
AMCG00010677 LOC107558663 coding upstream 165285 38608574 ~ 38622991 (-)
AMCG00010680 ppwd1 coding upstream 197279 38640568 ~ 38641283 (-)
AMCG00010676 trim23 coding upstream 199173 38642462 ~ 38649992 (-)
AMCG00010683 sgtb coding upstream 219738 38663027 ~ 38669527 (-)
G82252 NA non-coding downstream 138308 38285755 ~ 38287535 (-)
G82126 NA non-coding downstream 927730 37497718 ~ 37498113 (-)
G82125 NA non-coding downstream 931130 37492723 ~ 37494713 (-)
G82020 NA non-coding downstream 1066021 37357333 ~ 37359822 (-)
G82017 NA non-coding downstream 1069640 37355758 ~ 37356203 (-)
G82347 NA non-coding upstream 75376 38518665 ~ 38526795 (-)
G82362 NA non-coding upstream 183237 38626526 ~ 38626937 (-)
G82435 NA non-coding upstream 360537 38803826 ~ 38828301 (-)
G82436 NA non-coding upstream 377217 38820506 ~ 38820945 (-)
G82469 NA non-coding upstream 583772 39027061 ~ 39027421 (-)
AMCG00010666 NA other downstream 776 38423479 ~ 38425067 (-)
AMCG00010623 NA other downstream 1017694 37405880 ~ 37408149 (-)
AMCG00010602 NA other downstream 1742025 36677697 ~ 36683818 (-)
AMCG00010597 ercc8 other downstream 1784150 36627901 ~ 36641693 (-)
G81716 NA other downstream 2709171 35714951 ~ 35716672 (-)
AMCG00010664 NA other upstream 14485 38457774 ~ 38465061 (-)
AMCG00010667 NA other upstream 33621 38476910 ~ 38483422 (-)
AMCG00010679 ppwd1,LOC107558664 other upstream 191770 38635059 ~ 38636502 (-)
G82392 NA other upstream 211629 38654918 ~ 38688260 (-)
G82607 NA other upstream 1062295 39505584 ~ 39509159 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location