AMCG00010665


Basic Information

Item Value
gene id AMCG00010665
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 38403007 ~ 38421660 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00010665
CGGCGGAGTCGCAGTTGTGGACCCGCAACCGGGACCAGAGACAACCGCCCGGGCGCCGAGCAGGAAACACTGGGGATAAAGCAAAGCCAGGAGCGACCGGGGAGCAGAGACGGGCTGTGTGCGTCACATACATCGCCatatactgtttgtttttctgcagcaCCTGGCAGTGAAGgatgaAGCTAAAAGAAATAGACCGCACTGCAATACAGGCCTGGAGCCCAGCGCAGCACCACCCAGTGTATCTGGCCACCGGTACGTCTGCGCAGCAGCTCGACGCCACGTTCAGTACCAATGCGTCGCTGGAGATCTTCGAGCTGGACCTGGCTGACACCACGCTGGACATGAAGTCGTGTGGCACCTTCTCCTCTCCTCACAGTTCTGGGGTCAAGCCTGTGTCCTTGCCCCTCACCAGGTACCACAAGCTGGTGTGGGGTCCCCATGGGATGGACGAGCAGGGCCGGCCCTCGGGGGTGCTGATTGCGGGCGGGGAGAATGGCAACGTCATTCTGTACGACGCTGCCAAGATCATTGCCGGGGACAGCGACGTGATGATCGCCCAGAACGACAAGCACACCGGCCCCGTCCGGGCCCTTGATGTCAACCCCTTCCAGACCAACCTTGTAGTCTCCGGAGGCAACGAGTCTGAAATCTACATCTGGGACCTGAATAATTTCAGCAACCCGATGACACCAGGACCAAAATCTCAGCCCCTGGAGGACATCAGCAGCGTGGCGTGGAACCGGCAGGTCCAACACATCCTGGCCTCAGCGTGCCCCAGTGGCCGCGCCTCCGTGTGGGACCTGAGGAAGAACGAGCCCATCATCAAAGTCAGCGACCACAGCAACCGGATGCATTGCTCCGGCCTGGCCTGGAACCCCGAGGTGGCCACCCAGCTGGTCCTAGCCTCCGAGGACGACCGCATGCCGGTCATTCAGATGTGGGACCTGAGATTTGCTACCTCACCCTTGAAGGTCCTGGAGAACCACACGAGCTGTGGGAAGGACAACCGGATCCTCTGCTGGAACCCCAACACTGCAGAGGTGCTGTACGAGTTGCCCACCAGCACTCAATGGTGCTTCGACATCCAGTGGTGCCCCAGGAACCCCGCCGTGCTCTCGGCCGCTGCCTTCGACGGGCGCATCGGCATCTACTCCATCATGGGCGGCAGCGCGGAGGGCCAGCGGCAGAAGCAGGCTGACCAGctcagctcctcgtTTGGGAACCTGGACCCGTTCGGGACCGGACAGACCCTGCCACCCCTTCAGATGCCCCAGCCCCCGGCCCAGCAGAGCGCCGTGATGCCCCTGAAGAAGCCTCCCAAGTGGATCCGCAGACCCGTGGGGGCATCCTTTGCTTTCGGAGGCAAGCTCGTGACCTTCGGGAACGTGAAGGCCGcccctcagcagcagcagcagcagcccactCCCCACATCGTCTATGTCAGCCAGGTTGTGACGGAGACGGCGTTCCTGGACCGCTCCAATCAGCTGCAGTCGGCCATGACCGCAGGAAGCTTCATGGACTTCTGCCGCTCCAAAGTGGAGGCCTCCCAGAGCGACTTCGAGAGGAATGTCTGGTCTTTCTTGAAGATCGCTGTGGCTCTGCAGAAGGGCAGTGTCCCGCCTAAGGAGCCTGTGTGTGAGTCTGAGCCGGCGGGCCCCGATGCCGATGGCCTCCCGACCGCCGCTGCTGCCACTGATGAGCTCGGCTTAGACGAGgcagaagaggaggaagacacCAGTCTGGGAGAGAGCGCTCCTGCTGTCAAGGAACGGTTTAAACTCTCGGTCAGCGAAGGCAAGTTTCCTGCCATCTCTGTGTTCGCAGACGTGGACGGCCTGATCACCCAGGCTCTGCTGACCGGGGACTTCGAGGGGGCCGTCGACCTCTGCCTCCACGACAACCGCGTGGCTGACGCGATCATCCTGGCCATCGCGGGGGGGCCGGAGCTGCTGGCCAAGACGCAGAAGACCTACTTTGACAAAACGCAGAGCAAGATCACCAGGTTGATCACCGCAGTCGTGACCAAGGACTGGAGGGAGATCGTGGAGTCATGTGACCTGCAGAACTGGAGGGAGGCTCTGGCCGCGGTGTTGACATACGCCCGCCCCGAGGAGTTTTCTGCCCTGTGTGATCTCCTCGGCTCACGGCTGGAAGGGGACGGGGACCTGGGGTTGCAGGTGCAGGCGTGTCTCTGCTACATCTGCGCCGGCAACGTGGAGAAGCTGGTGGCCTGCTGGACCAAGGCTGGAGACGGCAACTcgcccctctctctgcagGACCTGGTGGAGAAGGTGATGGTGGTGCAGCGGGCGGTGGAGCAGTCCCGGGGGGCGAGCTCCGTGGTGATGGGCGCTCTGCTGGCGGAGAGGATGAGTCAGTACGCCGGTCTGCTGGCCGCCCAGGGCAGCCTGGCCACGGCCCTCGCCTACCTGCCCAGCAACACCAACCAGGCCGCGGTGGTGCAGCTGCGCGACCGGCTGTACCGAGCACAGGGGGAGCGGGCAGGGGGGCAGCCGGTCCCGGGCTTCCCCTCGGACCGTCAGCCGGCCCCCAGGGAGAGGGCCCCCGTCAAGCCCGCCTATACCCCCAGCCAGGATGTGCAGCCACCACAGCAGTACTACGCCCAGGTTAGACCTGCATCTACTGTCACTTCCTGGAGTAACCAAACTCCCACTGCTCTTCCAACTATCCCTCCGGTAGCCTCTTCCTCAGACTCCCAGCCCGAGCAGCCCCCACCGCCCGGCTTCCTGATGCCCGGCCAGGCCAACCCCAGCGTCCCAACGTCCCCCACTCCCGGGTACATGTACCAGAGCAGCGCACGGCCGGGGTACCCGCAGAGCTGTAGTGCAGGGAGAGCTGTAGAGGACCAAGGAGAAGACTTATTACTGGCCAGCGATGTGCTAGACTCTGGAGCCTACCCCCAGGCCCCGCAGTACCCTGCTGGAGCGGGAGGCCCAGCGATCTATCAGCCTCAGCACCACACTGTTCCGCCTCcccctttctcctcctcctcttcctcctctgcccCCTATCCTCCTCACTACATGCATCCCTCTCACTCCCTGCCGCCTGTCTCCTCCGGGCCCCAGTACCCGGGGCATCCTCGGGGCTCGTCCGGGGACCCCCTGTCTCCCGTGTCCCCCTTCTGTCCTCCTCTGTCTCCTGGAGCCTCCTCCCAGCATGGCGGTCCGGGCGCTCCAGCCTCCTCCTACCCTCTGCCTCCGCCGACCGGAAACACAGGTACTCTGCCCGGCCTCCCCTCGGAGAACAGATCTGCAGgGCCGCAGAACGGATGGAACGATCCTCCGAGTCTGAGCCGTGtgccaaagaagaagaagGTCCCAGACCACTACACTCCTCCTGCTCCCATCATGGCTCCTATAATGACCCCTCTGGGAGACCCCCAGGCCCAGCCGCCCTCCCACACCCCTGCCTTCCAGCCCCAGCAAATCCCCGCGGGGCAGCCGGGCATGCAGGGCCCCTACCCTggcctccagcagcagcagcagcagcagcccctgGCCCAGCCACCCATGCAGCCCTCGGGCCCCCGGCTCAGTGTGGAGGGGGCACCCGGGGCCCCCATTGGGGACATCATACAGCAAACCAGGAGAAAACTGGACGACGCGAACAAGCGCCTGGAGTCTCTGTACGATAAGCTTCGCGACCAGACGCTCTCGCCGGCCATCGTCGCTGGCCTGCACAACATCGCTCGCAGCGTCGAGACCCGCAGCTACATGGAGGGGCTGAACATCCACACCCACATCGTCCGCAACAGCAACTTCAGCGAGACCTCGGCCTTCATGCCTGTGCTGAAGGTCGTCCTGACGCAGGCGGACAAGCTCCGGGTGTAGCGGTTCTTGCATGAGCCGCGCAGGAGCGTCACTGCGGCAGCATGTGGGACCGACTCGGACCGAGCTCTGGAGCTGCTTGTCATCCTGTCACTGCTGGTGTGAGCCGCGTCTTAGGGAACAACCCCCCCCGACACCCAAAACTATTTTAGAATATTTCTTTTCACGTGTAATCATGACATTCAGAAAGAGCAGAGTGCAATcggtgctttttttgttttgcattttaaatctcTACAGTATTGTAAGGAAGGCATGTGTTTCATGATAACTATAACTgagatgtatgtatgttctgATCTGAAAGAGGGGCCTGTCTGCGTAATTGTCGTGCATCTGTATGTCTGTCAGTTAATTCCAGCATCTTTTTGTTTGTCCTCAAGTCTGTCAGGCTGTGAACCAGACACCTCCTTGTATTCAGTTAGAATTAAGTGGTATCTGCTCCAGTTTTAGCATTATTAATTTTAGTGGAGCAAAGAAACTTTAAAACCACgacatgcaatattttaaataaatagtatttatttaaa

Function

GO:

id name namespace
GO:0007029 endoplasmic reticulum organization biological_process
GO:0001889 liver development biological_process
GO:0055123 digestive system development biological_process
GO:0006810 transport biological_process
GO:0030134 COPII-coated ER to Golgi transport vesicle cellular_component
GO:0005783 endoplasmic reticulum cellular_component
GO:0044446 obsolete intracellular organelle part cellular_component
GO:0031090 organelle membrane cellular_component

KEGG:

id description
K14005 SEC31; protein transport protein SEC31

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00010665 True 4387 mRNA 0.61 27 38403007 38421660

Neighbor

gene id symbol gene type direction distance location
AMCG00010663 scd5,LOC106562327,LOC106568335 coding downstream 1124 38386532 ~ 38401883 (-)
AMCG00010668 LOC107558253 coding downstream 17306 38380527 ~ 38385701 (-)
AMCG00010658 hnrnpd,LOC102781216,LOC102314153 coding downstream 32983 38356423 ~ 38370024 (-)
AMCG00010659 mat2al,LOC100699062,LOC102202437,LOC101466580,LOC102780929,LOC107732036,LOC103371477 coding downstream 56146 38344121 ~ 38346861 (-)
AMCG00010657 NA coding downstream 59453 38336036 ~ 38343554 (-)
AMCG00010662 NA coding upstream 4183 38425843 ~ 38443289 (-)
AMCG00010678 adamts6 coding upstream 142416 38564076 ~ 38607856 (-)
AMCG00010677 LOC107558663 coding upstream 186914 38608574 ~ 38622991 (-)
AMCG00010680 ppwd1 coding upstream 218908 38640568 ~ 38641283 (-)
AMCG00010676 trim23 coding upstream 220802 38642462 ~ 38649992 (-)
G82252 NA non-coding downstream 115472 38285755 ~ 38287535 (-)
G82126 NA non-coding downstream 904894 37497718 ~ 37498113 (-)
G82125 NA non-coding downstream 908294 37492723 ~ 37494713 (-)
G82020 NA non-coding downstream 1043185 37357333 ~ 37359822 (-)
G82017 NA non-coding downstream 1046804 37355758 ~ 37356203 (-)
G82347 NA non-coding upstream 97005 38518665 ~ 38526795 (-)
G82362 NA non-coding upstream 204866 38626526 ~ 38626937 (-)
G82435 NA non-coding upstream 382166 38803826 ~ 38828301 (-)
G82436 NA non-coding upstream 398846 38820506 ~ 38820945 (-)
G82469 NA non-coding upstream 605401 39027061 ~ 39027421 (-)
AMCG00010623 NA other downstream 994858 37405880 ~ 37408149 (-)
AMCG00010602 NA other downstream 1719189 36677697 ~ 36683818 (-)
AMCG00010597 ercc8 other downstream 1761314 36627901 ~ 36641693 (-)
G81716 NA other downstream 2686335 35714951 ~ 35716672 (-)
AMCG00010532 ppic,LOC107713556 other downstream 4298335 34098346 ~ 34104672 (-)
AMCG00010666 NA other upstream 1819 38423479 ~ 38425067 (-)
AMCG00010664 NA other upstream 36114 38457774 ~ 38465061 (-)
AMCG00010667 NA other upstream 55250 38476910 ~ 38483422 (-)
AMCG00010679 ppwd1,LOC107558664 other upstream 213399 38635059 ~ 38636502 (-)
G82392 NA other upstream 233258 38654918 ~ 38688260 (-)

Expression


Co-expression Network