AMCG00011160


Basic Information

Item Value
gene id AMCG00011160
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 12606907 ~ 12609458 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011160
CAGGCTTTGATAGAGCATGAGTACCACTGACAACACTACACCACCCCACCTGCTAGAACACAGCGCATGGTCCATACCGTCCTGGCCATTTCGGGACCCGAGCATGCTGGGTCCAGGCTGCGTGAACCTGGCGCCGAGCCTGCTGGGCCCGAGTTGTGCGGACCAGGCGTCGGGCCTAGCAGAGAGGCTTCCCCGGACCTGCTACCCCGAACCCTGGCTGCTCCCTGGCTGCAGCTCAGCGTTCGAGCGGCTGGTGAGCAGCTCCCTGGCAGAAGCCCACAGCAGACTGGCAGGAGACTCAGACCTCGGGAGCAGCAGACACAAGCCACCCCGATCCTCCATTCTGGAGCGTTGCATCCTCAGGCTGTCCACAGCCAGTGTTGCTGTGGGGACTGAGGACCTGGACAGGATCAGGAGGTCGCCTGCGCCAGAGGGGGGGGCCACAGGGGGGGCAGGGCGCTGCGAGACCAACGATGCGGTGCTGAAGCGCAGGCAGAAGCAGATCCAGTATGGCAAGAATACCAGCGGCTACCAGAACTACCTGAGAGAGGTGCCCCGGAGCCTGCGTGTCCCTGGCCTGCACCCCCGTACCCCAAACAAGTACAGGAAGTATAGCCGGCGCTCCTGGGACATGCAGATCCGGCTGTGGAGGCGGGCACTGCATGCCTGGGACCCCCCCTGTGACCTCCCTGACAGCCCCTGCCCCCGTCTGCCTGTGGAGGTGGGGACAGGGGGGGAAAGTGACGGGCAGGACCCAGTGGAACACCTGCAGGGGCTGCTGGAGAGGATGAGCACCGGAATGACAAGCAAAGACCTGCCCTCCCCGTCCGCCCTCCCACCCGCGCACAGCATCTGGCCTGCTCCACAGGCTGTGCAGGACGGGCCGGCCACTCTGTCCTGCTCCTGCGCCGGCCAGCTGCCCATGGATGACAACCTGCTGGACTGGCTGTGCCATCTCATGGACACTGACCAGTCCCCCTGGACACTGCACTGGCCACACTGACCAGTCCCCCTGGACATTTCACTGACCAGTCCCCCTGGACACTGTATTGGCCACACTGACCAGTCCCCCTGGACACTGGCCCATCCTGTACCATAGCAACTGTTCATACTTGATATGGGTTCTGACTGCACACCCCTTGTCACACAGTCGCACAGCTGTTTAATGTATTCCTGTTCTGTTGGACTCTCCACACTGTGCCAGCACATTGACAATAACACTGGAAAATGTAAATCACACAGCCCTACTGTTAGTCTGTGGGCGTTTCTCTCTACACCCATCCCAGCACCTGCACTCTACACCCAACTCTGCAGGGCTTTGGTTTCCACTCCACAGGCAGACTGGATGGTCAGTACAGAGAGGGCTCAGCTGACCACAGCCTCACAATGTCCAGTCTCTTCACTCGCAGCCCTGCCCCAGCCAGTCACTGTCCACACAGCCcggtccctctctccctgcaaCCCTAGGCTCAGCCTCTTTCCTCGTTTTTGTAAAAACGGACGCCAATGAAGAGGGTGAGAAATCcactgccttttttttcccctgtgctgttttctcctctttctgttttgtctttccTGCCCTCAGCTGTTGGGGCCCTTGAGTTCCATTGTAAGCAGTGTAATAAAACTTGTAACTAAAATCAAGGAA

Function

GO: NA

KEGG:

id description
K18710 SLBP; histone RNA hairpin-binding protein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011160 True 1651 mRNA 0.60 7 12606907 12609458

Neighbor

gene id symbol gene type direction distance location
AMCG00011153 NA coding upstream 55878 12543512 ~ 12551029 (+)
AMCG00011158 NA coding upstream 114567 12488412 ~ 12492340 (+)
AMCG00011144 NA coding upstream 227364 12375452 ~ 12379543 (+)
AMCG00011148 fgf18a,LOC107747128,LOC107596396,LOC107660900 coding upstream 231869 12366997 ~ 12375038 (+)
AMCG00011145 fbxw11,LOC105905987,LOC106603254,LOC108277126 coding upstream 261689 12335077 ~ 12345218 (+)
AMCG00011165 NA coding downstream 9666 12619124 ~ 12621237 (+)
AMCG00011164 LOC106604922 coding downstream 14228 12623686 ~ 12635118 (+)
AMCG00011162 NA coding downstream 34227 12643685 ~ 12646950 (+)
AMCG00011161 NA coding downstream 40202 12649660 ~ 12664977 (+)
AMCG00011168 NA coding downstream 150172 12759630 ~ 12762316 (+)
G104709 NA non-coding upstream 55043 12551040 ~ 12551864 (+)
G104666 NA non-coding upstream 172351 12429496 ~ 12434556 (+)
G104627 NA non-coding upstream 272693 12333328 ~ 12334214 (+)
G104609 NA non-coding upstream 347046 12259612 ~ 12259861 (+)
G104603 NA non-coding upstream 352087 12250259 ~ 12254820 (+)
G104800 NA non-coding downstream 221391 12830849 ~ 12831280 (+)
G104814 NA non-coding downstream 325978 12935436 ~ 12940170 (+)
G104835 NA non-coding downstream 409334 13018792 ~ 13019064 (+)
G104883 NA non-coding downstream 577490 13186948 ~ 13229416 (+)
G104910 NA non-coding downstream 943943 13553401 ~ 13555056 (+)
G104694 NA other upstream 79876 12525360 ~ 12527031 (+)
AMCG00011141 LOC567622,LOC108413244,LOC103367052,LOC101466533,LOC107379323 other upstream 466442 12067451 ~ 12140465 (+)
G104550 NA other upstream 539570 12066494 ~ 12067337 (+)
G104435 NA other upstream 762818 11842129 ~ 11844089 (+)
AMCG00011115 NA other upstream 796085 11808846 ~ 11810822 (+)
G104719 NA other downstream 671 12610129 ~ 12619055 (+)
AMCG00011163 reep2,LOC107557670,LOC107588406 other downstream 60918 12670376 ~ 12679429 (+)
G104815 slc23a1,pwwp2a,LOC106603911,LOC102781148 other downstream 332922 12942380 ~ 12943082 (+)
AMCG00011204 NA other downstream 1258879 13868337 ~ 13878282 (+)
AMCG00011210 bod1,LOC107581912,LOC107661728,LOC107713186,LOC107662284,LOC107587245,LOC108278584,LOC106603873 other downstream 1376207 13985665 ~ 13992845 (+)

Expression


Co-expression Network