AMCG00011329 (LOC108431127,LOC107658040,LOC107707213)


Basic Information

Item Value
gene id AMCG00011329
gene name LOC108431127,LOC107658040,LOC107707213
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 19054134 ~ 19090434 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011329
GGCTGCCCTAATCTCTGCAATGGCAATGGGAAATGTACCCTTGGTCAGAACAGCTGGCATTGTGTCTGTCAGACAGGCTGGAGAGGGTCTGGATGCAACGTTGCTATGGAAACCTCTTGTGCAGATAACAAGGATAATGAGGGAGATGGTCTCATTGATTGCATGGACCCAGACTGCTGCATACAAAGCCCCTGCCAGTCCAACCCACTGTGCCGTGGGTCACGTGACCCTCTGCAGATCATCCAGCAGAGCCAGTCACCTTCTCAGAAAGTGAGGTCATTCTACGACAGGGTGAAGATGCTGGTGGGGAGGGACAGCACTCACATCATCCCCGCGGATAACCCCTTTAATGCAAGtCTCGCGTCTTTGATCAGGGGTCAAGTGTTAACTACAGATGGTACGCCACTGGTCGGGGTGAATGTGTCCTTTGTGAAATACCCTCAATACGGTTACACCCTAACGCGTCAGGATGGGACGTTTGACCTGATCGCCAACGGTGGCGCCTCCCTGACACTGCACTTTGAACGTGCGCCCTTTATGAGCCAGGAGCGCACGGTGTGGCTGCCGTGGAACAGCTTCTACGCCATGGACACCATGGTGATGAAGACTGaggagaacaccatccccagcTGCGACCTGAGTGGGTTTGTCAGGCCAGACCCCATCGTCATCGCCTCGCCACTCTCCTCCTTCTTCAGCTCCCAGCCCGGACAGAAGTCCATCATTCCCGAAACACAGGCAAGgtcctcctctcttctcctgGTCCTTCATGAACAGATTGAAATCCCTGGCACCAGTTTAAAGCTCTGCTATCTGAGCTCCCGCACCTCTGGTTATAAATCTCTCCTGAAGATCACCATGACCCAGGCAGTAGTCCCTCTCAGTCTCATAAAAGTCCATCTGATGGTAGCAGTAGAAGGACACCTTTTTCAGAAGTGGTTTCATGCTTCTCCAAACCTGGCATATACGTTCATCTGGGATAAGACGGATGCCTACAGCCAGAGGGTCTATGGGCTGTCAGAGGCTGTTGtgtctgttggcTTCGAGTATGAGACCTGCCCTAGCCTTATCCTGTGGGAGAAGAGGACAACCCTATTGCAGGGCTATGAGCTCGATCCATCCAATCTTGGGGGCTGGTCACTGGATAAACACCACACTCTGAATGTTAAAAGCGGCATCCTTCACAAAGGGAACGGGGAGAACCTGTTCCTCTCCCAGCAGCCAGCCGTCATCACCAGCATCATGGGCAACGGACGGAGACGCAGCATCACCTGCCCCAGCTGTAATGGCTTAGCAGACAGCAACAAGCTCCTGGCGCCCGTGGCCCTCGCGGTGGGCATTGATGGCAGCCTCTACATCGGGGACCTCAACTTTGTCAGGAGGGTTTATCCATCCATGAACACCACCAGCATCCTGGAGCTCCGAAACAAAGACTTTAGACACAGTAACAACCCTACTCACAAGTActtcatggcagtggaccctgTCTCGGGAGCGCTGTACATCTCCGACACTAACAGTCGGCGTATTTACCGCATCAAGTCCCTGACTGGAGCCAAGCAGCTGTCAGAGAACTCGGAGGTGGTGGCCGGGACCGGGGAGCAGTGCCTGCCCTTTGACGAGGCTCGCTGTGGAGACGGCGGCAAGGCGGTGGAGGCCACACTCATGAGTCCCAGAGgcATCGCAGTAGACAAGAATGGGTTAATGTACTTCGTTGACGCTACCATGATCCGGAAGGTGGACCAGAACGGCATCATCTCGACTCTCCTGGGATCCAATGACCTGACGGCAGTCCGGCCTCTCAGCTGTGACTCCAGCATGGACGTGAGCCAGGTCCGCTTGGAGTGGCCCACAGACCTCGCCATCAACCCCATGGACAATTCCTTGTATGTCCTGGAGAACAACGTCATTTTGCGCATCACGGAAAACCACCAGGTGAGCATCATCGCTGGGAGGCCCATGCACTGCCAGGTCCCCGGAATAGACTACTCCCTAAGTAAGCTGGCCATCCACTCTGCCCTGGAGTCTGCCACCTCCATCGCCATCTCCCACACCGGCGTGCTGTACATCACGGAGACGGATGAGAAGAAGATCAACCGTGTGCGGCAGGTCACCACCAACGGGGAGATCTCCCTGCTGGCCGGCGCCGCCTCCGAATGCGACTGCAAGAATGACGTCAACTGCAACTGCTTCACCGGGGACGACGGCTACTCCACCGACGCCAACCTCAACTCGCCCTCCTCCCTGGCGGTGTCCCCAGACGGCACGCTCTACATCGCCGACCTCAACAACATCCGCATCAGGGCCGTCCGGAGCAACCGCCCCCTCCTCAACGCTGCAGGGCAGTACGAGGTGGCCTCCCCACGGGAGCAGGAGCTGTACGTCTTCAACGGAAGGGGCCTGCACCTGTACACCGTGAGTCTGGTCACTGGGGAGGCTCTGTGTAACTTCACCTACGGCGCCGACGGTGATCTCAGTACCGTTGTGGACAATTGCAACAACACACTGAAGATCCGCAGGGATGCGGGCGGTCTGCTGCGCTTCCTCCTGCTGCCTGAAAACCAAGTGGTGAGTCTCACTCTGGGCACCAATGGAGGCCTAAAATCGATGTCGGCCTTCAACCAGGAACAGGCTGTGATGACGTATGCTGGTAACACAGGGCTACTCGCCACCAAATCAGATGAAACTGGATGGACAACGTTTTACGAGTATGACACTGAGGGGCGTTTGACAAATGTGACCTACCCTACGGGCGTGGTGACCAGCCTGCATCGGGAAATGGAGAAATCTATCAACATCGACATTGAGAACTCCAACCGGGACGACGATGTCACCGTCATTACGAACCTTTCCTCTGTGGAGGCCTCCTACACCGTGGTTCAAgacCAAGTTAGGAACAGTTACCAGCTGTGTAACAATGGCACACTGCGCGTGATGTATGCGAATGGCATGGGCATCAGCTTCCATACAGAGCCTCATATCCTAGCTGGCACAGTGAGCCCCACCATAGGACGGCGCAACATCACCCTGCCGATGGAGAACGGGCTGAACTCCATCGAGTGGCGTCTGAGGAAGGAGCAGACCAAGGGCAAGGTCATCGTGTTCGGGAGGAAGCTTCGGGCCCACGGAAGAAACCTGCTGTCGATTGACTTTGACCGAAACACCCGTACAGAGAAAATCTACGATGATCACCGGAAGTTCACCTTGAGGATTATGTATGATCTTCAGGGTCGGCCCTCCATGTGGCTGCCCAGCAGTAGCTTGGCCGTGGTCAACGTGTCCTATTCCCCCACCGGGCAGCTGGTGGGCCTGCAGCGTGGGAGCATGAGTGAGAGGACAGAGTATGACAGCCTGGGACGCATCCTGTCTCGCTCCTTCGTCGACGGCAAGATATGGAGCTATAGCTACCTGGAGAAGTCCATGGTGCTCCTCTTACAGAGCCAGCGACAGTACATCTTTGAGTTCGATGCCTCCGGTCGTGTCATCGCTGTCACCATGCCCAGTGTGGCTCGTCACACCATGTCCACTCACACCTCAATCGGCTACATCCGGAACATCTACAATCCCCCAGAGAGCAATGCCTCTGTCATTTATGACTTCAGCGAAGACGGGAAACTCCAGAACACCTTCTACTTAGGGACGGGCCGAAAGGTGTTCTACAAATACGGCAAGCTGTCAAAACTGTCCGAAGTCCTGTATGACAGCACGGCGGTCACCTTTGGTTATGATGAAACCACTGGGGTGCTCAAAATGGTCAACCTGCAGAGTGGCGGCTTCTCCTGCACCATCCGCTACCGGAAGATCGGCCCCCTGATCGACAAACAGATCTACCGCTTCTCTGAAGAGGGCATGGTGAACGCCCGCTTCGACTACACCTACCACGACAACAGTTTCCGTATCGCCAGCATGAAGCCCGTCATCAGCGAGACACCGCTTCCCGTGGATCTGTACCGCTATGACGAGATCTCTGGGAAGGTGGAGCACTTTGGCAAATTTGGGGTCATCTATTATGACATCAACCAGATCATAACCACAGCCGTTATGACCCTCAGCAAGCACTTCGACACCCACGGACGCATCAAAGAGGTCCAGTATGAGATCTTCCGCTCCCTGATGTATTGGATGACGGTGCAATACGACAACATGGGGAGAGTCATCAAGCGGGAGCTGAAGATCGGCCCCTATGCCAATACCACGCAGTACAACTACGAGTACGACGGAGACGGGCAGCTGAATGGGGTCAAAGTCAATGAATGGTCCACCTGGCGTTACAGTTATGACCTGAATGGGAACCTGCACCTGCTGAACCCTGGCAACAGCGCACGTCTGCTGCCACTCCGCTACGACCTGAGGGACCGCATCACTCGCCTGGGGGACATGCAGTACAAGCTGGACGAAGATGGCGTTCTCTGCCAGCGTGGGTCAGATATATTCGAGTACAACTCCAAGGGTCTGCTGGTGCGATCCTACAGCAAGACCAATGGCTGGAGTGTCCAGTACCGCTACGACGGACTAGGCCGCAGAGTGTCCAGTAAGACCAACGTCGGCCAGCACATTCAGTTCTTCTACGCCGATCTCAACAACCCCGCCAGGGTGACCCATGTCTACAACCACTCCAGCTCAGAGATCACCTCTCTGTACTATGACTTGCAAGGCCACTTGTTCGCCATGGAGATCAGCAGTGGAGAAGAGTACTACATTGCCTCGGACAACACTGGGACACCCCTGGCTGTTTTCAGCAGCAATGGGCAGATGATCAAACAGCTCCAGTACACGGCCTACGGTGAAATCTACCACGACTCCAACCCTGAATTCCAGTTAGTGGTGGGCTTTCATGGGGGCCTTTACGACCCCCTCACCAAGCTGGTGCACTTCATGCAGAGGGATTATGATGTGCTTGCTGGCCGCTGGACAGCCCCTGATTACACCCTGTGGCAGAAAATTGGAAAGGAGCCAGCGCCCTTTAATCTGTATATGTTCAAAAATAACAACCCACTAAGCGATGTTTTGGATGTAAAGAACTACGTCACAGATGTGAAGAGCTGGCTGGTGATGTTTGGATTTCAGCTTAGTAACATCATACCCGGCTTCCCGAAGCATACAATGTACTTTGTGGATCCGCCCTATGAGCTGCTTGAGAGTCAGGACTGTGAAAATGGACAGAAGGACAAGCCTGGCCACTGGTTTGGCACCAATATACCAATCATCGGGAAGGGCATCATGTTTGCAGTGAAAGAAAGCAAAGTGGTCACAGGCATCACCAACATAGCCAGCGAAGACAGCCGCAAGATCGCAGTGGTACTGAACAATGGCTACTACCTGGAAGGCACACACTACACCATCGAGGGGCGAGACAGCCATTACTTTGTGAAGATCGGCTCTGCTGACAGCGACCTGGTAACCTTGGGCATGACCAGTGGACGCAAGTTGCTGGAAAATGGGGTCAACGTCACTGTGATGCAGCAGACACTTCTGGTGAGTGGCAGGACTCGCAGGTTTACAAATATCGAGTTTCGGCATGCCACCCTGTCCCTAAACATCCGCTACAGTCCGTCCCTGGACACGGTGGACGAGGAGAGAAACCGAGTCCTGGACCAGGCTCGACAGAGGGCTCTGAGCAGCGCCTGGCTGAAGGAGCAGCAGAAAGCGAGGGATGGCAAAGAAGGAAGCAGGTTATGGACAGATGGCGAAAAACAGCAGCTGTTGAACACCGGAAGGGTACAAGGATACGACGGCTATTATGTCCTGCCAGTGGAGCAATACCCAGAACTGGCAGACAGTAGCAGCAATATCCAGTTCCTCCGACAAAATGAAATGGGGAAG

Function

NR:

description
PREDICTED: teneurin-2-like

GO: NA

KEGG:

id description
K24473 TENM, ODZ; teneurin

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011329 True 5823 mRNA 0.55 17 19054134 19090434

Neighbor

gene id symbol gene type direction distance location
AMCG00011327 si:dkey-34l15.2,LOC107707213 coding upstream 11933 19017222 ~ 19042201 (+)
AMCG00011326 si:dkey-34l15.2,tenm2,LOC107670182,LOC107707213,LOC101076136 coding upstream 54250 18947352 ~ 18999884 (+)
AMCG00011325 LOC105903358 coding upstream 231724 18802638 ~ 18822410 (+)
AMCG00011319 NA coding upstream 785477 18259800 ~ 18268657 (+)
AMCG00011322 NA coding upstream 801763 18245569 ~ 18252371 (+)
AMCG00011331 LOC103390990,LOC105893714,LOC101160174,LOC104927068,LOC102798575 coding downstream 60048 19150482 ~ 19151729 (+)
AMCG00011343 NA coding downstream 178536 19268970 ~ 19279256 (+)
AMCG00011344 LOC101481134 coding downstream 196192 19286626 ~ 19289195 (+)
AMCG00011338 NA coding downstream 220873 19311307 ~ 19313365 (+)
AMCG00011340 ndst1,LOC108278613,LOC108431357 coding downstream 282013 19372447 ~ 19396764 (+)
G105858 LOC105030512,LOC106609167,LOC106569888 non-coding upstream 437069 18616850 ~ 18617065 (+)
G105811 NA non-coding upstream 806366 18175355 ~ 18247768 (+)
G105794 NA non-coding upstream 1021109 18032755 ~ 18033025 (+)
G105792 NA non-coding upstream 1053791 17999636 ~ 18000343 (+)
G105776 phykpl,LOC100691570 non-coding upstream 1285913 17765891 ~ 17768221 (+)
G106022 NA non-coding downstream 497759 19588193 ~ 19588973 (+)
G106071 NA non-coding downstream 712737 19803171 ~ 19803475 (+)
G106134 NA non-coding downstream 866571 19957005 ~ 19995987 (+)
G106138 NA non-coding downstream 887813 19978247 ~ 20014348 (+)
G106277 NA non-coding downstream 1525004 20615438 ~ 20615641 (+)
G105778 LOC105024433,LOC107752029,LOC107743918,LOC106604409 other upstream 1266084 17784163 ~ 17788050 (+)
AMCG00011293 plac8l1 other upstream 2071893 16978492 ~ 16982241 (+)
AMCG00011268 NA other upstream 2943753 16105586 ~ 16110381 (+)
G105373 cssa04h5orf24,pcbd2,LOC105890513,LOC100699409 other upstream 3070055 15963340 ~ 15984079 (+)
AMCG00011255 LOC106603967,LOC105011194,LOC108410970 other upstream 3180645 15863032 ~ 15873489 (+)
AMCG00011328 NA other downstream 16839 19107273 ~ 19117369 (+)
G105916 NA other downstream 131621 19222055 ~ 19222421 (+)
G106139 LOC108275110 other downstream 1004795 20095229 ~ 20162966 (+)
AMCG00011365 LOC108438827,LOC108243066,LOC107376386 other downstream 1205577 20296011 ~ 20339325 (+)
G106242 NA other downstream 1270774 20361208 ~ 20367223 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location