AMCG00011322


Basic Information

Item Value
gene id AMCG00011322
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 18245569 ~ 18252371 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011322
ATGGTTTTACTGGACTGGAGTGAACTGACCAGCCCGTGTGGCCAGAAGGCTGCGGTGTCATCAGCCTGTGACAGGGATGGGCGGCGCGGCTCTCAGGTGCGTTGTCGTCCTTCAGAGCAGGTGATGCGGGTGGAGCTGCCGGAGCAACGCGGCGGATCACTCATTACTTTGTCCTGCCCATCACAAACTGTCATTTGCAAGGTTTTAAATGAAGTAAATGGGACCGACCCCCTTAATATCAACAATGCAACTGTGAACAACCCCCCAGTAGACAAATGGAGAAACTACAACTTCTGGATCGGCCTTTGTCTAGCTATCTTCTCTGCTGGCCTTATTGGGGGCAGTGTCATTCTGAAAAAGTGGGCTCTCTTAAGACTGGCTCGCAAGGGGGAAACCAGAGCAGTGGGTGGTGGTGAAGCTGCAAACTTTGCTGCATATGCTTTTGCTCCAGCTACAGTAGTAACTCCATTGGGTGCCTTAAGTGTACTTATAAGTGCAGTATTGTCCTCCTACCTACTTGGAGAGAGCCTGAATTTGCTGGGGAAACTGGGATGTGTTCTAAGTCTGCTGGGAAGCACTGTAATGGTCATCCATGCtccagaggaggaggaagttAGAACACTTGAAGAAATGACTGCCAAACTTTTGGATCCTGgctttattgtttttgctattgttttattcattttatgtatgGTGCTGATCTTCTACTTTTCACCACGGATTGGACAAACCAACATCTTGATCTACATTAGCATCTGTTCTCTGCTTGGGGCCTTCACGGTTTCTTCAGTCAAAGGCTTGGGCATTGCCATAAAGACGTTTGTTAATGATCCTTTTGTAATAAAGCATCCCCTTACATGGATTATGATTTTCACATTGGTGACTTCCGTTATCATCCAGGTGAACTATCTCAACAAGTCACTGGATGTCTTCAACACCCTGCTGGTTTATCCCATTTACTATGTGCTCTTCACCACTGTTGTCCTGACCACATCCATCATTCTCTTCAAGGAGTGGTACTCTATGTCAGGAGTGGACATTGTTGGAACTCTCTGTGGGTTTGCCGTGATCATCTTCGGAGTTTTCATGCTGCATGTTTTCAAGGACCTAAAAGTCAGTCTGGAAAACCTTCCACAACCAGTCCATCAAAGCCAGGAAGAACCTGTGCCTCAGTTGGTCAAAGCTGATGACAAACGGATTCTCATTGACAACATTGAATGCTTACCTCCTTTCATGGAAGAGTCACCAAGGGTATTTATAATAAGCTGAATTAAGTGGTTTTgtcataatgtatatatttttaaataattttaatgtttggcTGCTGATGACCCCTTGGTGAAGTGGCAGGTACAGTGAACAGtattttgttgatgttgaaATACTCTGAAACTCCAAACAATATGAACAGATCTgtggttttatatattaattttaaaatgtcctggTCCTTAGATTTTAACGTTGGAGCATCTCCTTTTTGTTTCCACCACATGCTTATCAGATTATCGTGATTTGTTTCAAGAACACACAGGTCTGGGATGATTTGGATTTTTAGAATGACTTTCTATGAACATTTCCAAGTGAAAATTCATGCTTGTGTATTGCAAAGCTTCTTTCCAATCTTGTAATTTTAAAGAAGCACAGCTGTAATGTTTATGATGGTCATGGTAGTCCACATTGAAATCTGTATATttgaagttatttattattgtttatccAATTCAAGTAATGAAATGCCTTTCAGTGAAATCTACTACCATATGAATACATGCAGTGGAAAAACTCAGTTATTGATTTcactgatttttaaataatgaattcagTTTCAGACTAAATGTTTCTGAACAAAATGGAACAACTTTGCAAAGGTTTGCGGTTTTGTTCCAGACTTTTtggcaatacatttttcttggtTTACATTCCTAACAGATTGTTGGGGAGagtcttttcttttcagctttTCAAGATTGAATGGTTACAAAAGTATcagcatttgtgtatttaaccaaacataattgttttcagCATATTTGAGAAGAATGAGCtatacatttgaaaggaaatgttttacaaattaacttttaaaaatctatttttaactGTACTTTAATGGACTGATACTGTGAGTGTAAATATGCAAGCATTTTcaggtttgttttctgtttattttttgtgtgaaacatatgtatttttcttgaaTGTAAATGATAGAGAACAATCTATGGTCCAATAAAATTTATTACTGTTTCTGAATTGAATGTGTTCCTTCCAACCAAAAACGGTGGTTCTTACAATTGTTATTTTAGTGGAATTATGATAACCTTTCAATTTGGTTGTAAAAATCCACTGGTTGGTTGCTACTGACATGAACTTTTATGCAga

Function

GO: NA

KEGG:

id description
K22733 NIPA, SLC57A2S; magnesium transporter

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011322 True 2388 mRNA 0.39 5 18245569 18252371

Neighbor

gene id symbol gene type direction distance location
AMCG00011321 cyfip2,LOC107561176,LOC107550751,LOC107752024,LOC107664348,LOC107744558 coding upstream 1424 18220046 ~ 18244145 (+)
AMCG00011323 NA coding upstream 33706 18200641 ~ 18211863 (+)
AMCG00011320 gria2,LOC107575061,LOC108411138 coding upstream 147496 18092116 ~ 18098073 (+)
AMCG00011324 gria1,LOC108427845 coding upstream 169532 18070401 ~ 18076037 (+)
AMCG00011305 hnrnpab,LOC103028658,LOC106611940 coding upstream 483786 17757826 ~ 17761783 (+)
AMCG00011319 NA coding downstream 7429 18259800 ~ 18268657 (+)
AMCG00011325 LOC105903358 coding downstream 550267 18802638 ~ 18822410 (+)
AMCG00011326 si:dkey-34l15.2,tenm2,LOC107670182,LOC107707213,LOC101076136 coding downstream 694981 18947352 ~ 18999884 (+)
AMCG00011327 si:dkey-34l15.2,LOC107707213 coding downstream 764851 19017222 ~ 19042201 (+)
AMCG00011329 LOC108431127,LOC107658040,LOC107707213 coding downstream 801763 19054134 ~ 19090434 (+)
G105794 NA non-coding upstream 212544 18032755 ~ 18033025 (+)
G105792 NA non-coding upstream 245226 17999636 ~ 18000343 (+)
G105776 phykpl,LOC100691570 non-coding upstream 477348 17765891 ~ 17768221 (+)
G105769 NA non-coding upstream 494085 17751250 ~ 17751484 (+)
G105756 NA non-coding upstream 503182 17734990 ~ 17742387 (+)
G105858 LOC105030512,LOC106609167,LOC106569888 non-coding downstream 364479 18616850 ~ 18617065 (+)
G106022 NA non-coding downstream 1335822 19588193 ~ 19588973 (+)
G106071 NA non-coding downstream 1550800 19803171 ~ 19803475 (+)
G106134 NA non-coding downstream 1704634 19957005 ~ 19995987 (+)
G106138 NA non-coding downstream 1725876 19978247 ~ 20014348 (+)
G105778 LOC105024433,LOC107752029,LOC107743918,LOC106604409 other upstream 457519 17784163 ~ 17788050 (+)
AMCG00011293 plac8l1 other upstream 1263328 16978492 ~ 16982241 (+)
AMCG00011268 NA other upstream 2135188 16105586 ~ 16110381 (+)
G105373 cssa04h5orf24,pcbd2,LOC105890513,LOC100699409 other upstream 2261490 15963340 ~ 15984079 (+)
AMCG00011255 LOC106603967,LOC105011194,LOC108410970 other upstream 2372080 15863032 ~ 15873489 (+)
AMCG00011328 NA other downstream 854902 19107273 ~ 19117369 (+)
G105916 NA other downstream 969684 19222055 ~ 19222421 (+)
G106139 LOC108275110 other downstream 1842858 20095229 ~ 20162966 (+)
AMCG00011365 LOC108438827,LOC108243066,LOC107376386 other downstream 2043640 20296011 ~ 20339325 (+)
G106242 NA other downstream 2108837 20361208 ~ 20367223 (+)

Expression


Co-expression Network