XLOC_006073 (drgx)


Basic Information

Item Value
gene id XLOC_006073
gene name drgx
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 30912117 ~ 30920265 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00011989
CTGGTCACTCCCTCCTTGCGCGCGCGAGAGCGGATAAACCGGAGCGCTCAGTGATTGACGGTGGGAGTGAAACTGCTCAGCTGAGGTTGAGCAGGAGACGCGAGGAAACCCTACTGCACACGGACCGTCCACTGAGTGAATTATTCTCTCCACTCGCAAAGCACCATGTTTTACTTTCACTGTCCTCCACAGTTAGAAGGAGAGTGCTGCAGGACCAACACATTGAACACAAATGGGTTCGGGAATCACGCCTCTGGAGACTTTGATGACGGTTTTCTGCGCAGAAAACAACGAAGAAACAGGACGACTTTCACCTTACAACAGTTGGAGGCTTTGGAGGCGGTTTTTGCACAGACGCACTATCCAGACGTGTTCACGAGGGAAGAGTTGGCTATGAAAATCAACCTGACAGAGGCTCGCGTCCAGGTTTGGTTTCAAAACCGAAGAGCAAAGTGGAGGAAAACAGAAAGAGGAACTTCGGAGCAGGACGGAGGcaaagaacaaatgaatgaaggcaatCCTCCTGCACGAAACCTCAACCAGTCTCCTGTTGACCACAGCAGAAGCAAGAAAGAACCAATGGAGCTCCAGCAGAACATTAACAGAGTGGTGGGTTCGGGAGGACCTTTTTTCCCATCCTGTCTGCCTGGGACTCTGCTGAACACAGCCACTTACGCGCAAGCTTTATCACAAGTGGCAACTTTAAAAGGAAGTCCGCTGTGTTCCTGCTGTGTGCCCGACCCAATGGGCCTGTCCTTCCTGCCACCATACGGGTGTCAGAGTAACCGCACCGCCAGCGTGGCAGCCCTGCGGATGAAGGCCAGAGAGCATTCAGAGGCCGTGCTCCAGTCTGCCAACCTGCTGGGCACAGGGTCTACAACCGGGCCTGCAGCGGGCCCAGCGCTTCCTCTCAGCCAAAACACCGGAGGAGACTCCAGTCCAAACTCCAGTACCTCAAAGATCACATCACTACGGAGAACTCCAGACAAGCATCTGCACTGCCAAAAGGAGGGTCCGGATAAGAAATGAGGGATTCTAGGTCGATTCCTTTTGATTTTTTCAGGACACTCTTTGGATGAAGGATTTATAATCAAGCATTGAATGCCTGctacctttttattttatttcttttttatttttgagtgaactgactCACCCAGGACATGAAGGGTGTAAAGTGCAACCCCTTCTTGTGTTTTTTGTGCGTATGTATGTGTCAGACTATTACTTTGTTAGTAATTTTTCCTCTCCTCGTTCACTTTTACTCATGATTCTTTGCTTTGATTTGGGTGCACATGGGCGCACCGATGCTGTAATACCATTTTCCTGGTGGACAGATTAATaattatggttaaaaaaaaagaaaaaagaaatctccCTGGTTGCCAATGTGAACTTACTTAATTTTTCACAATCCACTTTGATGTTTGACTTGTGTACTGTGAAGTCAGGTGATGATAGACATTCTGCATTTTGTCAAGATATATGCCATGCCGAAATATAAATGTACTAATGTGAAATACTATATGTAAGATAATATCAAGGACAGAACTGTATATTAAGTGGTTTGTCATGTTTTATGATATGATGCGGGTTATCTCCTATTTATTCATGCTGATGGGATGACAACTGTCATTACGTCTGTCCGCCATCGGTCGCAAGAGTCCACACACTGGTTCTGTTTTGACATGTtctataaaacaattaaacatgtAGGCAATCA
>TCONS_00011990
TATTCTCTCCACTCGCAAAGCACCATGTTTTACTTTCACTGTCCTCCACAGTTAGAAGGAGAGTGCTGCAGGACCAACACATTGAACACAAATGGGTTCGGGAATCACGCCTCTGGAGACTTTGATGACGGTTTTCTGCGCAGAAAACAACGAAGAAACAGGACGACTTTCACCTTACAACAGTTGGAGGCTTTGGAGGCGGTTTTTGCACAGACGCACTATCCAGACGTGTTCACGAGGGAAGAGTTGGCTATGAAAATCAACCTGACAGAGGCTCGCGTCCAGGTTTGGTTTCAAAACCGAAGAGCAAAGTGGAGGAAAACAGAAAGAGGAACTTCGGAGCAGGACGGAGGcaaagaacaaatgaatgaaggcaatCCTCCTGCACGAAACCTCAACCAGTCTCCTGTTGACCACAGCAGAAGCAAGAAAGAACCAATGGAGCTCCAGCAGAACATTAACAGAGTGGTGGGTTCGGGAGGACCTTTTTTCCCATCCTGTCTGCCTGGGACTCTGCTGAACACAGCCACTTACGCGCAAGCTTTATCACAAGTGGCAACTTTAAAAGGAAGTCCGCTGTGTTCCTGCTGTGTGCCCGACCCAATGGGCCTGTCCTTCCTGCCACCATACGGGTGTCAGAGTAACCGCACCGCCAGCGTGGCAGCCCTGCGGATGAAGGCCAGAGAGCATTCAGAGGCCGTGCTCCAGTCTGCCAACCTGCTGGGCACAGGGTCTACAACCGGGCCTGCAGCGGGCCCAGCGCTTCCTCTCAGCCAAAACACCGGAGGAGACTCCAGTCCAAACTCCAGTACCTCAAAGATCACATCACTACGGAGAACTCCAGACAAGCATCTGCACTGCCAAAAGGAGGGTCCGGATAAGAAATGAGGGATTCTAGGTCGATTCCTTTTGATTTTTTCAGGACACTCTTTG
>TCONS_00011991
ATGTTCTATTTTAAAAGTGTTGCGTTCCTGTTTAAAACAGTGAACACAAATGGGTTCGGGAATCACGCCTCTGGAGACTTTGATGACGGTTTTCTGCGCAGAAAACAACGAAGAAACAGGACGACTTTCACCTTACAACAGTTGGAGGCTTTGGAGGCGGTTTTTGCACAGACGCACTATCCAGACGTGTTCACGAGGGAAGAGTTGGCTATGAAAATCAACCTGACAGAGGCTCGCGTCCAGGTTTGGTTTCAAAACCGAAGAGCAAAGTGGAGGAAAACAGAAAGAGGAACTTCGGAGCAGGACGGAGGcaaagaacaaatgaatgaaggcaatCCTCCTGCACGAAACCTCAACCAGTCTCCTGTTGACCACAGCAGAAGCAAGAAAGAACCAATGGAGCTCCAGCAGAACATTAACAGAGTGGTGGGTTCGGGAGGACCTTTTTTCCCATCCTGTCTGCCTGGGACTCTGCTGAACACAGCCACTTACGCGCAAGCTTTATCACAAGTGGCAACTTTAAAAGGAAGTCCGCTGTGTTCCTGCTGTGTGCCCGACCCAATGGGCCTGTCCTTCCTGCCACCATACGGGTGTCAGAGTAACCGCACCGCCAGCGTGGCAGCCCTGCGGATGAAGGCCAGAGAGCATTCAGAGGCCGTGCTCCAGTCTGCCAACCTGCTGGGCACAGGGTCTACAACCGGGCCTGCAGCGGGCCCAGCGCTTCCTCTCAGCCAAAACACCGGAGGAGACTCCAGTCCAAACTCCAGTACCTCAAAGATCACATCACTACGGAGAACTCCAGACAAGCATCTGCACTGCCAAAAGGAGGGTCCGGATAAGAAATGAGGGATTCTAGGTCGATTCCTTTTGATTTTTTCAGGACACTCTTTGGATGAAGGATTTATAATCAAGCATTGAATGCCTGctacctttttattttatttcttttttatttttgagtgaactgactCACCCAGGACATGAAGGGTGTAAAGTGCAACCCCTTCTTGTGTTTTTTGTGCGTATGTATGTGTCAGACTATTACTTTGTTAGTAATTTTTCCTCTCCTCGTTCACTTTTACTCATGATTCTTTGCTTTGATTTGGGTGCACATGGGCGCACCGATGCTGTAATACCATTTTCCTGGTGGACAGATTAATaattatggttaaaaaaaaagaaaaaagaaatctccCTGGTTGCCAATGTGAACTTACTTAATTTTTCACAATCCACTTTGATGTTTGACTTGTGTACTGTGAAGTCAGGTGATGATAGACATTCTGCATTTTGTCAAGATATATGCCATGCCGAAATATAAATGTACTAATGTGAAATACTATATGTAAGATAATATCAAGGACAGAACTGTATATTAAGTGGTTTGTCATGTTTTATGATATGATGCGGGTTATCTCCTATTTATTCATGCTGATGGGATGACAACTGTCATTACGTCTGTCCGCCATCGGTCGCAAGAGTCCACACACTGGTTCTGTTTTGACATGTtctataaaacaattaaacatgtAGGCAATCATGTACATCTCCTGTTGCCTATTGCTCACACCATCTGGCTATGATCAATTATTAATAAGTTCACATGCGGTAGGCCTGCAAAAAATGGAAGCAATGGCtgctcttattatttatttaccttaaaGTACATTATGAATCTCTTGTATCATATGACATTATTACATGCATCCCTTGATGACAATGATAATTATGACATTACGACAAAGCTCTGATGCCATTAGGTTTAGTCATGCTGCCTTTAGAATTTCTTTATATTGCAACAAACCACAAAAACTCTTTAGAACAAAAGCATAAATGCAATTATACAATACCGAGCGATCATTTATGAACCATCAAAcagattattaaaaacaaacgcGAGTAGCTGCTTTCATAGAaacacattgcaatattgcaaaAGCAACTTAGATTAAGAACACTCAACAGTGCTACCTTTGCAAAGAAAGCTGGGCTGATTAAATTCTTGTCCTTGAGGATTTTCAGGAAATTACTTTTGATAGTCAATAACACAATTGAGTAAACTGCACACACATTAGCATTAATAATTGATGCTGAATTATGTATTATCACAAAGTAGTGATTTAATTATTCATGATGTGACACCCCGGTGACAAAGCAGAGCCGGATAATGTCAAAAGTCTTGCCTGATGAAGCCATGCTGCTTGGCATTTGTGTTTTAAGGCAGCACAGTATTGCTTGAAATGTGTGTAGAAAATACTGTTATATTTGGAGCACACtctcaaagaaaaaaagaaaactctgCAGCACTTTATTTTTTCAATGCCCAGTTTTGTGTTTACATTGTCACAGTAATTGCATAAACTGGGTTATAACTACTATCCCTAAACCTAATCATCACCCAGTACTTTCTTAGGTAAGTATATGCTCTGTAGAATACATGTAAAGTGCAACCGAAAAATCATTCACTGGTATCGATAACAGAAAATGCACTAATAACATTTGAGAAAATTAAGCATAATACAGGCTGCCATATtgaaaaattgtaattattaattaactGTATGATATTTTATCACTTTAgtcaatacatttaatttaacattgaattaaagataattttttagatttgaaacaatattaaataaacacaataacttCAATAATAAATGAGAATCCtgctgtatacagttgaagacaaaattattagccctcctgtgtaattggatttctttttttaaatatttcccaagtgctgcttaatttaaaatataattgttttaataactcattttttataACTAATTACTTTAGTCTGtgcatgatgacagtatataattttTTAAGAAGATTTGCAAGATGCtttattcagttgaaagtgctaAAGGAGGTTAACTATATGCAAGTTAGGTAAATTGGGCAAACCGTTGAGcaatagtggtttgttctgtagccaatcgaagaaaatatttaaataatttcttaaggGGACTTTAAATGACCtaaatttgatcatttttttttatccttttttaaaTTCCAGTCAAACTTCAAGaaataagactttgttcagaagaaaaaaataaaaagaaactctGTGGAAAAatattcttgctctgttaaacatcatttggcatataaaaaagagagagaattaAAAACGTTAAAATAATTTAGCAGAATGAGCTAAGAACATGCAACAACCATGGTGTAAAATCATATGCtatgacctttttttttattaacttttttctttcggtcccactttatattaagtgtccttaactactatgtacttgcatcaaaaaaataaatacaatgtacttactgtgtttatgatgtatttgagaacacttgtggtgtttttgagttgggatagaggttgggttatggacaggtttggtggtatgggtaggtttaaaggTGGGTTAAGGTGTTGGGAatagtcaacagtgtatttacaaatgtaattacaaaagttaattacagatgtaattacatacttttatttaatcaagcataagtacaca

Function

symbol description
drgx Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be located in nucleus. Is expressed in nervous system and trigeminal placode. Orthologous to human DRGX (dorsal root ganglia homeobox).

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0007275 multicellular organism development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function

KEGG:

id description
ko03000 Transcription factors

ZFIN:

id description
ZDB-GENE-070330-1 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be located in nucleus. Is expressed in nervous system and trigeminal placode. Orthologous to human DRGX (dorsal root ganglia homeobox).

Ensembl:

ensembl_id ENSDARG00000069329

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00011989 False 1723 mRNA 0.46 7 30912117 30918278
TCONS_00011990 False 933 mRNA 0.52 6 30912385 30917629
TCONS_00011991 True 3527 mRNA 0.37 5 30912938 30920265

Neighbor

gene id symbol gene type direction distance location
XLOC_006072 ercc6 coding upstream 2101 30874153 ~ 30910016 (+)
XLOC_006071 CR762493.1 coding upstream 75341 30836656 ~ 30836776 (+)
XLOC_006070 cxcl12a coding upstream 92402 30804367 ~ 30819715 (+)
XLOC_006069 cxcl18a.1 coding upstream 212748 30696286 ~ 30699369 (+)
XLOC_006068 CR762483.1 coding upstream 216123 30692669 ~ 30695994 (+)
XLOC_006074 NA coding downstream 289 30920554 ~ 30928661 (+)
XLOC_006075 vstm4a coding downstream 30890 30951155 ~ 30967784 (+)
XLOC_006076 lrrc18a coding downstream 82393 31002658 ~ 31005889 (+)
XLOC_006077 si:ch211-223a10.1 coding downstream 149916 31070181 ~ 31090040 (+)
XLOC_006078 arhgap22 coding downstream 188069 31108334 ~ 31139766 (+)
XLOC_006067 NA non-coding upstream 234474 30676825 ~ 30677643 (+)
XLOC_006065 AL844152.1 non-coding upstream 400394 30511607 ~ 30511723 (+)
XLOC_006063 AL929330.1 non-coding upstream 660260 30251741 ~ 30251857 (+)
XLOC_006056 NA non-coding upstream 1020297 29889189 ~ 29891820 (+)
XLOC_006101 NA non-coding downstream 886255 31806520 ~ 31850508 (+)
XLOC_006102 NA non-coding downstream 1034955 31955220 ~ 31978484 (+)
XLOC_006103 NA non-coding downstream 1185000 32105265 ~ 32108472 (+)
XLOC_006105 CR769766.1 non-coding downstream 1472118 32392383 ~ 32392499 (+)

Expression


Co-expression Network