XLOC_006069 (cxcl18a.1)


Basic Information

Item Value
gene id XLOC_006069
gene name cxcl18a.1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 30696286 ~ 30699369 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00011982
GAGGACAGTTCAGTGCACACTTgagaaagacagacaaacagaaatgGCTTTCAAAACTCTGCAAGCAAGTGTCAAAGTCCTGCTCCTGCTCTCAGTCTGTTCACACTTTATCTCAGTTAAAATGACAGCTGCAACATTCATCCGAGAAAAATGTGAGTGTGTTAAGGAGGCTGGAGCAGTGCAGTGGAGAAAAATCACAGACTACACAATCACTCCGAAAAATCCTCTTTGCAACAAGGTTCAAATCAAACTCCAGTTGTCAAATAAAGAAGTGTGTCTAAATCCAGAGTCCAAGCAGGGGAAAAAACTGCAGAAATGCTGGCAAAAAATTAACTTCAACCCACAGAGGAAGAAGGTCTGTCTGACGATCAAGAAGAATGCACCAAAAAGACTCAAGAAGCTTTAATTTAACAATTCTGTTACTGTGTGTTCTGTATTGTAATACATAATAATTTACCttgtctgttttttatttgttcaaatatatattattatgtagattaaatttgtaaatacatttttgtgcTGTTATTTTCTAATAAAACCTTAAACCTATACGTGTTTGCATATTGGATGTGactataacatataatataacatataataataataataatattaatgggctgcacagtggcacagtgggtagcacgatcgtctcacagcaagaaggtcactggttcgagtcttgactggttcagttggcatttctgtttgtagtttgcatgttctcccggtgttggcgtgggtttcctccgggtactacggtttaccccacagtccaaagacatgccctatgg

Function

symbol description
cxcl18a.1 Predicted to enable chemokine activity. Predicted to act upstream of or within immune response. Predicted to be located in extracellular space. Is expressed in several structures, including eye; fin; heart; integument; and liver.

GO:

id name namespace
GO:0006955 immune response biological_process
GO:0005576 extracellular region cellular_component
GO:0008009 chemokine activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-090303-1 Predicted to enable chemokine activity. Predicted to act upstream of or within immune response. Predicted to be located in extracellular space. Is expressed in several structures, including eye; fin; heart; integument; and liver.

Ensembl:

ensembl_id ENSDARG00000111840

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00011982 True 800 mRNA 0.38 4 30696286 30699369

Neighbor

gene id symbol gene type direction distance location
XLOC_006068 CR762483.1 coding upstream 292 30692669 ~ 30695994 (+)
XLOC_006067 NA coding upstream 18643 30676825 ~ 30677643 (+)
XLOC_006066 ppifa coding upstream 120487 30572172 ~ 30575799 (+)
XLOC_006064 zmiz1a coding upstream 125427 30421472 ~ 30570859 (+)
XLOC_006065 AL844152.1 coding upstream 184563 30511607 ~ 30511723 (+)
XLOC_006070 cxcl12a coding downstream 104998 30804367 ~ 30819715 (+)
XLOC_006071 CR762493.1 coding downstream 137287 30836656 ~ 30836776 (+)
XLOC_006072 ercc6 coding downstream 174784 30874153 ~ 30910016 (+)
XLOC_006073 drgx coding downstream 212748 30912117 ~ 30920265 (+)
XLOC_006074 NA coding downstream 221185 30920554 ~ 30928661 (+)
XLOC_006063 AL929330.1 non-coding upstream 444429 30251741 ~ 30251857 (+)
XLOC_006056 NA non-coding upstream 804466 29889189 ~ 29891820 (+)
XLOC_006054 CT025909.2 non-coding upstream 940859 29755293 ~ 29755427 (+)
XLOC_006101 NA non-coding downstream 1107151 31806520 ~ 31850508 (+)
XLOC_006102 NA non-coding downstream 1255851 31955220 ~ 31978484 (+)
XLOC_006103 NA non-coding downstream 1405896 32105265 ~ 32108472 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location