AMCG00011750



Basic Information


Item Value
gene id AMCG00011750
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information


Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 3440089 ~ 3447847 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence


>AMCG00011750
ATGGGAAGATGCTTGGCTGCAGCAGATGTCACCTGCAACCTGAAAAGATTGTCCAATTCCTGCCCTGccatgcagctggtggccagTGTGACAGTGGAGTCCTCTGGGCGCAGCATGACCCATGACCTGATACTCTTGGATCTGATTCTTATTGCCTTCAAAACTCCTGTAGAATTACAAGCCAGCATTGTGacttttaaaaGCACCTCCAACGCCCGGATCACGGTGTGGCTGCAGCGGAGGCCCGTGAAGGAGCTGCTGCTGACCTGCAACTTCTCAGGCGACGACCAGGTGTCCCAGATCAATTGGGATCGGGTGGTGGGTGGCAACCGCAGCCAGCTGGCGGTGTACCACCCGCAGCACGGCATCCACATCCCCCCCGAGCACAGTGACAGCCTGCAGGTGACCGTCTCCTCCCCGCACAGCGCCAAGCTCGTGCTGAAGGGGGTACCACAGCTGGACTACAACGACACCTACTGCTGCACTTTCATCACCTTCCCCTCGGGGAGTCTGCAGCGCTGCCTGGACAGAGACAACCCCTCAGTAGAGGCTCAGGAGGGTGAGAGCAAGATAGACCGGTGGCTAATAATCGGAGGTGTGGCTTCAATTCCTCTGGTGGCCCTGCTACTGGTCTCAGTCAACATCTGCCGGAGACTCTCCAGGAGACGAGTCTTTGATGTCCAGCAGACGTATCTCACAGAGACCGAGATGAAGCTGCGCGGGGGTCAGCGCTGTCAGCTAAAACTGCCGAGAGCAGCAAACCCAGCAGTCACCATCTGA

Function


GO:

id name namespace
GO:0051674 localization of cell biological_process
GO:0050900 leukocyte migration biological_process
GO:0016477 cell migration biological_process
GO:0002376 immune system process biological_process
GO:0048870 cell motility biological_process
GO:0030595 leukocyte chemotaxis biological_process
GO:0060326 cell chemotaxis biological_process

KEGG:

id description
ko04660 T cell receptor signaling pathway
ko04658 Th1 and Th2 cell differentiation
ko04659 Th17 cell differentiation
ko05310 Asthma

RNA


RNA id representative length rna type GC content exon number start site end site
AMCG00011750 True 780 mRNA 0.58 6 3440089 3447847

Neighbor


gene id symbol gene type direction distance location
AMCG00011749 NA coding upstream 27945 3409473 ~ 3412144 (+)
AMCG00011743 NA coding upstream 209319 3230144 ~ 3230770 (+)
AMCG00011736 cssa04h17orf49,zgc:103508,LOC106567897,LOC108424543,LOC107720679,LOC107742347 coding upstream 258364 3174730 ~ 3181725 (+)
AMCG00011739 NA coding upstream 271135 3163914 ~ 3168954 (+)
AMCG00011737 LOC105891152 coding upstream 288043 3141442 ~ 3152046 (+)
AMCG00011754 NA coding downstream 619 3448466 ~ 3448834 (+)
AMCG00011755 NA coding downstream 36915 3484762 ~ 3491555 (+)
AMCG00011759 NA coding downstream 213517 3661364 ~ 3667549 (+)
AMCG00011762 NA coding downstream 407562 3855409 ~ 3869281 (+)
AMCG00011761 mcm7,LOC107716516,LOC107744067 coding downstream 434778 3882625 ~ 3889058 (+)
G132270 NA non-coding upstream 189982 3169738 ~ 3250107 (+)
G132293 NA non-coding upstream 194237 3238486 ~ 3245852 (+)
G132268 NA non-coding upstream 324782 3104160 ~ 3115307 (+)
G132215 NA non-coding upstream 451082 2988746 ~ 2989007 (+)
G131992 NA non-coding upstream 778538 2661257 ~ 2661551 (+)
G132433 NA non-coding downstream 120040 3567887 ~ 3568440 (+)
G132466 NA non-coding downstream 221834 3669681 ~ 3672437 (+)
G132468 NA non-coding downstream 245658 3693505 ~ 3713698 (+)
G132480 NA non-coding downstream 306100 3753947 ~ 3785196 (+)
G132506 NA non-coding downstream 340380 3788227 ~ 3788440 (+)
G132271 NA other upstream 235492 3201374 ~ 3204597 (+)
AMCG00011735 NA other upstream 338952 3078417 ~ 3101137 (+)
G132221 NA other upstream 435427 3001432 ~ 3004662 (+)
G132072 NA other upstream 498918 2938370 ~ 2941171 (+)
G132058 NA other upstream 559829 2877274 ~ 2880260 (+)
AMCG00011770 NA other downstream 444534 3892381 ~ 3897596 (+)
AMCG00011771 NA other downstream 455828 3903675 ~ 3977662 (+)
AMCG00011806 NA other downstream 1667243 5115090 ~ 5120098 (+)
AMCG00011830 vmhcl,LOC107560354 other downstream 2312011 5759858 ~ 5761248 (+)
G133059 NA other downstream 2380954 5828801 ~ 5829532 (+)

Expression



Co-expression Network