G132270


Basic Information

Item Value
gene id G132270
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 3169738 ~ 3250107 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU165865
atatatatatatatatatatatatatagagagagagagaacagtcaCTGAACACAAACACCACATTGGATTTGCAGcacaacattttacagaaaatctTCAGTATTACACATCGGTGGTGGGGGAAGAGTCTCGACAATGGACTAGACTTGTGTGGGCTTAATTTTCTTTCAACTTCACGAATAATAAATATCCTTGTTCAAACTGACTTCAACAATAACCATAATATTAACAGAACCTATAGTCTCCCTCATGCGCGGTGTGTTTATCATGgcgtcaccccccccccccactacctccctgatctctctctttccacaCTGACTCCATGGTTCAACCTCAAgtcccatttttatttatatataaaaatggtgGACTAGGCAGAGAGCATCCTGGGTAATACGTGAGAATCTGGGTTTATAGAAACTGACCTTCCTGGTGACTTCCAATGAGAAGACCTTGAGCGCAACCACTGCAACACATGAGatcttattataataataacaacaactacaacaacaacaatagctGGAGGTGCATTTCTCCTAAAGGGATGCCCAGTTTGGGTAGATGTCCTGGAGGTCACAAGGTCATGTCCCAAGACTCGAGACTCACCCCAAACCTGCCCACCCAGAATGCAAGGTTTCTGTTAACCAATCATATCACACACAAGTCATTTAAAGTACCAATCAGATTGACGTATTTATATAAAACTTCCAAGATGCCAATTATCTTCGGTttttataacaataacaataataataatagggttTATTGGCCCAATCTGACACTAGCTACAATTTTGCCGTATTAATAGGTCTTTTATAACGATACATTTACAACCAATTAATATCCATTTGGTCCAGTGTGCTCCCAATCTTTGTAACATGAAAGGGAGGGATACGATTTACAGGGGGGAAGGAGGTCAGGTCTTGTAAGTCACCCCTTAAAATCCTCGATTTCTAAAGACGGGGAAAACGCCGTCACCGTGATCGGCTGACACGCCAGGAGTGGAGCAGTCTGGTCCGGTCGTAGGCGACGGCGAGGGTTTGGAACTACCCTGACCGGATCACCGCACACCCAGTCTTTAGCAAACGGGCTGAACTTGAAGGGCTGAGGTTTAAAAACCCACTGGGCTGGAGAGCACTGGATTCGAAAGTGtttgtctgtgcatgtgtgcatgtttattggagtgagtgagtgagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtccggaTCCTGCGAGCCGTGCCGAGCCACCAGGGGGCGTTAGTGCACCATGTACTCCTTGCGCTTGTTCAGCCGGACCTGGCAAAGGGACAGGCCGCCCAGCAGCACGTAGATGCCAGCCGCGATGAAGCAGTTGTAGCTGACCTGGTCATACAGGCCGTACACCGTCTGAGGAGGGTTTGAGCTGCAGGCggggaggggggaagggggggaagAGAGATTTCAGAAAG
>TU165866
atatatatatatatatatatatatatagagagagagagaacagtcaCTGAACACAAACACCACATTGGATTTGCAGcacaacattttacagaaaatctTCAGTATTACACATCGGTGGTGGGGGAAGAGTCTCGACAATGGACTAGACTTGTGTGGGCTTAATTTTCTTTCAACTTCACGAATAATAAATATCCTTGTTCAAACTGACTTCAACAATAACCATAATATTAACAGAACCTATAGTCTCCCTCATGCGCGGTGTGTTTATCATGgcgtcccccccccccccactacctccctgatctctctctttccacaCTGACTCCATGGTTCAACCTCAAgtcccatttttatttatatataaaaatggtgGACTAGGCAGAGAGCATCCTGGGTAATACGTGAGAATCTGGGTTTATAGAAACTGACCTTCCTGGTGACTTCCAATGAGAAGACCTTGAGCGCAACCACTGCAACACATGAGatcttattataataataacaacaactacaacaacaacaatagctGGAGGTGCATTTCTCCTAAAGGGATGCCCAGTTTGGGTAGATGTCCTGGAGGTCACAAGGTCATGTCCCAAGACTCGAGACTCACCCCAAACCTGCCCACCCAGAATGCAAGGTTTCTGTTAACCAATCATATCACACACAAGTCATTTAAAGTACCAATCAGATTGACGTATTTATATAAAACTTCCAAGATGCCAATTATCTTCGGTttttataacaataacaataataataatagggttTATTGGCCCAATCTGACACTAGCTACAATTTTGCCGTATTAATAGGTCTTTTATAACGATACATTTACAACCAATTAATATCCATTTGGTCCAGTGTGCTCCCAATCTTTGTAACATGAAAGGGAGGGATACGATTTACAGGGGGGAAGGAGGTCAGGTCTTGTAAGTCACCCCTTAAAATCCTCGATTTCTAAAGACGGGGAAAACGCCGTCACCGTGATCGGCTGACACGCCAGGAGTGGAGCAGTCTGGTCCGGTCGTAGGCGACGGCGAGGGTTTGGAACTACCCTGACCGGATCACCGCACACCCAGTCTTTAGCAAACGGGCTGAACTTGAAGGGCTGAGGTTTAAAAACCCACTGGGCTGGAGAGCACTGGATTCGAAAGTGtttgtctgtgcatgtgtgcatgtttattggagtgagtgagtgagtgtgtgtgtgtgtgtgtgtgtgtgtgagtgtgtgtgagtgtgtctg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU165865 True 1471 lncRNA 0.46 2 3169738 3171228
TU165866 False 1249 lncRNA 0.43 3 3169738 3250107

Neighbor

gene id symbol gene type direction distance location
AMCG00011739 NA coding upstream 784 3163914 ~ 3168954 (+)
AMCG00011737 LOC105891152 coding upstream 17692 3141442 ~ 3152046 (+)
AMCG00011738 her8a,LOC105027206,LOC107666285,LOC107750660,LOC107563304,LOC108443965 coding upstream 40878 3126524 ~ 3128860 (+)
AMCG00011740 NA coding upstream 58185 3110612 ~ 3111553 (+)
AMCG00011733 NA coding upstream 95609 3069841 ~ 3074129 (+)
AMCG00011749 NA coding downstream 159366 3409473 ~ 3412144 (+)
AMCG00011750 NA coding downstream 189982 3440089 ~ 3447847 (+)
AMCG00011754 NA coding downstream 198359 3448466 ~ 3448834 (+)
AMCG00011755 NA coding downstream 234655 3484762 ~ 3491555 (+)
AMCG00011759 NA coding downstream 411257 3661364 ~ 3667549 (+)
G132268 NA non-coding upstream 54431 3104160 ~ 3115307 (+)
G132215 NA non-coding upstream 180731 2988746 ~ 2989007 (+)
G131992 NA non-coding upstream 508187 2661257 ~ 2661551 (+)
G131988 NA non-coding upstream 522298 2645548 ~ 2647440 (+)
G131983 NA non-coding upstream 534788 2634331 ~ 2634950 (+)
G132433 NA non-coding downstream 317780 3567887 ~ 3568440 (+)
G132466 NA non-coding downstream 419574 3669681 ~ 3672437 (+)
G132468 NA non-coding downstream 443398 3693505 ~ 3713698 (+)
G132480 NA non-coding downstream 503840 3753947 ~ 3785196 (+)
G132506 NA non-coding downstream 538120 3788227 ~ 3788440 (+)
AMCG00011735 NA other upstream 68601 3078417 ~ 3101137 (+)
G132221 NA other upstream 165076 3001432 ~ 3004662 (+)
G132072 NA other upstream 228567 2938370 ~ 2941171 (+)
G132058 NA other upstream 289478 2877274 ~ 2880260 (+)
AMCG00011718 naa38,lsmd1 other upstream 311454 2852817 ~ 2858284 (+)
AMCG00011770 NA other downstream 642274 3892381 ~ 3897596 (+)
AMCG00011771 NA other downstream 653568 3903675 ~ 3977662 (+)
AMCG00011806 NA other downstream 1864983 5115090 ~ 5120098 (+)
AMCG00011830 vmhcl,LOC107560354 other downstream 2509751 5759858 ~ 5761248 (+)
G133059 NA other downstream 2578694 5828801 ~ 5829532 (+)

Expression


Co-expression Network