AMCG00011718 (naa38,lsmd1)


Basic Information

Item Value
gene id AMCG00011718
gene name naa38,lsmd1
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 2852817 ~ 2858284 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011718
GCCGTCCGTTGTAGAATCTCGCGAGAATCGCTGAAATCTCGGAAAACACCAAGAAAATGGCGGCGGTGAAGGAGGAGAACGGCACCGCGCTGCACCCCGGGAAGCTGGAGCACCTGCTGAACAAGAGCATGCGGATCCGGATGACAGACGGGCGCACGCTGGTGGGGCTGTTCCTCTGCACCGACCGCGACTGCAACGTCATCCTGGGCTCGGCACAGGAGTTCCTCAAGTCCACAGactcgTTCTCCCAAGGTGAGCCCCGGGTCCTGGGCTTGGCCATGATCCCCGGCCACCACGTGGTGTCCATAGAGGTGGAGACGGACAGCCTACAGAGCTCCCCGTGTTTCTAGACGGCcctgtgccacacacacaccagggggAAGACACCAGGACATGGGACTTGAACCCCTGCCATCAGTACCACCTCGGAGACCAATTAACTCtagaactgaaacaaaaaaaaaacacaaatggtgGAATTTCAGGCACCTTCTACAAACAAGTGTTCTTTGCCTGGCCAGAACAACACCGAAAATACCTCTTATTTATTTCACCCCACCTACCGGGGTTTGAACAGTCTACCGCTCTCTGGATACAAGCTAGGAGAGGACACAGAGGTCCCTCCCCTGAGAAGCAGTCTATCATCACCTGATCTCACGTCCTGTTAGGGTGCACTGTGGGAAATGACCCTTATTTCAGAGTTGGCGGTACTGTAAGGCAGACGGCCGCTTGCGAGAGGACTTCAAATCCGAAATGGAAGGGaggaggttgtgtgtgtgtctcagttgctttctttttcattatagAGACGTCCAGTCTGTGTGAACGTGGGCTGGCTATGTTGGGCGGCGCACAGGAGCAGGGACTCCCCAGCTGGTGGTTTTTATTTCGGCCgagctcttaattgcttaattgaactgtATAAAGCATGATTAGTTCGATTGAGCAattaagagcttggttggaagGAAAAAAACCCTGGGACACTGCTAACCTGGAGTCCAAAgattttacttttcttgtttattttatatttaaaaaggtttatataGGAGTTTTGGGTATCGTTGCTGCTTCGTCTGCGTTTTAGTTTTGACTTCAAGGACACTTGTTGCCACCCAGGCCGAGCCCCCTCATGTCACCTGACTCGATTGCGCTGTACAGAAAGAAAGGGTGAGTGTTTTTCGGGGAGGTCTGGGACTTGGGTATAAACACCCCACAGGGTCAGAGGACAGGaattgttaatatataaataaatcaaattattaacaAAGCATACTCTTAAgatggagtgtttttttttttttttgttccatgcACCTGGGGG
>TU165585
AAAATGGCGGCGGTGAAGGAGGAGAACGGCACCGCGCTGCACCCCGGGGCGGAGGACAGAAGCGAGGAGTACTCGGCGTACTCGCTGGCCCGGCAGAAGCTGGAGCACCTGCTGAACAAGAGCATGCGGATCCGGATGACAGACGGGCGCACGCTGGTGGGGCTGTTCCTCTGCACCGACCGCGACTGCAACGTCATCCTGGGCTCGGCACAGGAGTTCCTCAAGTCCACAGactcgTTCTCCCAAGGTGAGCCCCGGGTCCTGGGCTTGGCCATGATCCCCGGCCACCACGTGGTGTCCATAGAGGTGGAGACGGACAGCCTACAGAGCTCCCCGTGTTTCTAGACGGCcctgtgccacacacacaccagggggAAGACACCAGGACATGGGACTTGAACCCCTGCCATCAGTACCACCTCGGAGACCAATTAACTCtagaactgaaacaaaaaaaaaacacaaatggtgGAATTTCAGGCACCTTCTACAAACAAGTGTTCTTTGCCTGGCCAGAACAACACCGAAAATACCTCTTATTTATTTCACCCCACCTACCGGGGTTTGAACAGTCTACCGCTCTCTGGATACAAGCTAGGAGAGGACACAGAGGTCCCTCCCCTGAGAAGCAGTCTATCATCACCTGATCTCACGTCCTGTTAGGGTGCACTGTGGGAAATGACCCTTATTTCAGAGTTGGCGGTACTGTAAGGCAGACGGCCGCTTGCGAGAGGACTTCAAATCCGAAATGGAAGGGaggaggttgtgtgtgtgtctcagttgctttctttttcattatagAGACGTCCAGTCTGTGTGAACGTGGGCTGGCTATGTTGGGCGGCGCACAGGAGCAGGGACTCCCCAGCTGGTGGTTTTTATTTCGGCCgagctcttaattgcttaattgaactgtATAAAGCATGATTAGTTCGATTGAGCAattaagagcttggttggaagGAAAAAAACCCTGGGACACTGCTAACCTGGAGTCCAAAgattttacttttcttgtttattttatatttaaaaaggtttatataGGAGTTTTGGGTATCGTTGCTGCTTCGTCTGCGTTTTAGTTTTGACTTCAAGGACACTTGTTGCCACCCAGGCCGAGCCCCCTCATGTCACCTGACTCGATTGCGCTGTACAGAAAGAAAGGGTGAGTGTTTTTCGGGGAGGTCTGGGACTTGGGTATAAACACCCCACAGGGTCAGAGGACAGGaattgttaatatataaataaatcaaattattaacaAAGCATACTCTTAAgatggagtgtttttttttttttttgttccatgcACCTGGGGGGGGTCTCTGTGCTTTTAATGCTGAATAAATGCAATAATGTCCACAGTACAGAATCCACACCAAACACGGGATCGTCCCCAAGCTCGGCTTTAATAAACCCGTCCTTTCAAACAGCGCTGTTGCTTCTATTCAGCGTCTTcaaaaaaacaagtgaaattaagaccagaaaaagaaaagtatattcTACAGGATACATTCAACTCTCACGTGTCCATTGACTCTTCACTCACCCCTCACCCCTCCAGTCCCCTGTCCACAAACAGATTGACTGACTCTCCTAGGACATCCAACGAGCGATGGGACTGGAGGGAAAAGAAGCAAAATGGACCAGTGAACAGGGTCTCCAGCCCAGGTCCCGGAGAGAGACCGTACAGTATTGGGTTTGCAGTCAGTTCCACAATGAACAAGTCCCTGGCAACCTGTGTCCCTGTTGGGGGGCTACAGCCTTTAAAGTCCATTGACAGGGTTTGGGCCAGCTCTTTAATTACCTTAATTGAGGCTTAAGTGCTTAATTGATTATGGGAGGTGTGTGGATAAAGGGGTTAATCCACAGAAAATCTTCCACTATAACGTAGTGGGACAACAAAGAGACAAACGCAGAGCATTGGGCTGGAAGACTGTCCAGACCCCCACTCTCTTGGCACAGTGGGGTCCGACTGGCGCTCTGACCCACTCGAGCCAGGCCAAGCAAGAGAACTTCACCAGAGAGTCACGTttcttattgtaatttatttcacacGATTCGGTTTGATTGGTTTCTTATATATGCTGGAGTGTGCAAGTCTGgtaaatgaaaagacaaaataaataagatccGAGGGGCAAATGGACGCACATGATCGGCAGTCGCCCACCCCCTCGTTCCCCACCCAAACAAAGTAAGCGGCCGTTTAAAccttaaaagagaaaaaaaaaaaaaaaaacacggggTTTAAAAATAGATTCAAGCCGGGGGAAATGAATCATTGaaactaaaaggaaaaaatatgacAATCGAGTACCAGGCCTGGGGCCAACCGTGGTCCTGGGGGGCCGGAGGGGCTTCTGGGATGTGTGCATCACCCACACTCGCCTCGGTGCTCTCATTCTGCGTGGTGATGTCACAATGGGCCAGGAACAGGGCTGGCCCCACCCCCGCGGCCAGAGCATCGACAGATCAGGTCAGAAAACGGCCCAGTCAAGCTACAGGTCTGTGTGTGGCATCGTCCAGTTCATTTAGTGCAGGTCCACCAGAGCAGAGGGGTGATCCTCCCAGGAGTCCAGAAATCAACCCCACCCGACCcgaccccaccccaccccaccccccaaccccgACAGTGCGTCCAGTCTAGTTGTATTGGAATTTGAAGTGGAAGTTTCCGGAGCCGAATGGGTTGAACTCAAAGGGCCAGCCGCCGTGGCCCTggcccccccctcctccctgctGGCTCTCGGGGTCCAGGGGGTCCTCCCCGGCGTCGAACTTCTGTCGCATCTCtgcagggagggggggagaga

Function

symbol description
naa38 Predicted to be involved in negative regulation of apoptotic process. Predicted to be located in cytoplasm and nucleus. Predicted to be part of NatC complex. Orthologous to human NAA38 (N-alpha-acetyltransferase 38, NatC auxiliary subunit).

NR:

description
PREDICTED: N-alpha-acetyltransferase 38, NatC auxiliary subunit

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011718 False 1327 mRNA 0.50 3 2852817 2856745
TU165585 True 2819 TUCP 0.51 4 2852870 2858284

Neighbor

gene id symbol gene type direction distance location
AMCG00011717 NA coding upstream 41154 2805091 ~ 2811663 (+)
AMCG00011712 LOC105031478 coding upstream 70519 2777860 ~ 2782298 (+)
AMCG00011714 NA coding upstream 108244 2734189 ~ 2744573 (+)
AMCG00011705 NA coding upstream 214199 2637097 ~ 2638618 (+)
AMCG00011706 NA coding upstream 221757 2619628 ~ 2631060 (+)
AMCG00011723 NA coding downstream 71978 2930262 ~ 2938174 (+)
AMCG00011724 NA coding downstream 105946 2964230 ~ 2974831 (+)
AMCG00011733 NA coding downstream 211557 3069841 ~ 3074129 (+)
AMCG00011740 NA coding downstream 252328 3110612 ~ 3111553 (+)
AMCG00011738 her8a,LOC105027206,LOC107666285,LOC107750660,LOC107563304,LOC108443965 coding downstream 268240 3126524 ~ 3128860 (+)
G131992 NA non-coding upstream 191266 2661257 ~ 2661551 (+)
G131988 NA non-coding upstream 205377 2645548 ~ 2647440 (+)
G131983 NA non-coding upstream 217867 2634331 ~ 2634950 (+)
G131942 NA non-coding upstream 388211 2463991 ~ 2464606 (+)
G131941 NA non-coding upstream 390467 2462145 ~ 2462350 (+)
G132215 NA non-coding downstream 130462 2988746 ~ 2989007 (+)
G132268 NA non-coding downstream 245876 3104160 ~ 3115307 (+)
G132270 NA non-coding downstream 311454 3169738 ~ 3250107 (+)
G132293 NA non-coding downstream 380202 3238486 ~ 3245852 (+)
G132433 NA non-coding downstream 709603 3567887 ~ 3568440 (+)
AMCG00011713 LOC107377402,LOC101163851,LOC108249525,LOC106525311 other upstream 152427 2691539 ~ 2700390 (+)
G131981 neurl4,LOC102791343 other upstream 236756 2615453 ~ 2616061 (+)
AMCG00011702 NA other upstream 301780 2541795 ~ 2551037 (+)
AMCG00011695 NA other upstream 391092 2451363 ~ 2461725 (+)
G131898 bola2,LOC105020731,LOC105907194,LOC108436240,LOC104959592 other upstream 532784 2318010 ~ 2320033 (+)
G132058 NA other downstream 18990 2877274 ~ 2880260 (+)
G132072 NA other downstream 80086 2938370 ~ 2941171 (+)
G132221 NA other downstream 143148 3001432 ~ 3004662 (+)
AMCG00011735 NA other downstream 220133 3078417 ~ 3101137 (+)
G132271 NA other downstream 343090 3201374 ~ 3204597 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000059_00071798_00072160 NA coding CI01000059 null 71798 ~ 72224 (+)
mexican tetra (Astyanax mexicanus) G236810 naa38 non-coding NW_019170959.1 APWO02000557.1 98445 ~ 103074 (+)