AMCG00011712 (LOC105031478)


Basic Information

Item Value
gene id AMCG00011712
gene name LOC105031478
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 2777860 ~ 2782298 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011712
ATTCGGGGGAGAGCACGGCGCACAGAGCGCTGATGCACTGGAGCTCCGGGAGCAGGGTGTAGTCCTGCACTTTCTCTGCGCCGGGTAGGACTGACTGCGGGAATGAGCTCCGCCAATAAGCGGGAGTGGGAGCAGAAGAGGAGGCTGCAGCAGTTCCTGGGGGACCTGGCCTTGCTCGGCTCCCTGCAGGGCTTTCGCTATTTCCAGCCCTGGCTGCGAGGCAGGGAGGAGCTGCTCCTGACAGTGGTGAATGAGGACCTGGGCTGGCGGTCCCCGGGGGTCCCAGGCTCCGAGGCCTCCTcgctcagctccagctccagctccagcagcgAGGGCGCGGAGGGGCAGGCGTGGGGAGAGGAGCAGATGCTGCTGTCCAACAGGATCAGTGAGGGGTATCTTCTCCCAGCATCCCCCAGTGACCGAGAGATTGCAGTCCCAGAGATGAGCTGCACACTCTTCCTATTGGCCGGCTACGCCAAGTACGGCCGCCCCTACGCCTGGATCCGGTCCAATCACGAGCGGCTGGTGAGCATCGGCGGCACCGATTCGCTGGTGCGAGACACACCCCTGAAGCTGAGGTCCATCTCCGACTGGACAGCGCAGGGCAACCTGGTGGTCGAGGATCTGGACGCTCTCCGCCGGCTCCACGTGCGCGCTCTCTGGGACGTCCAGCGGACTGGGCCCGGCCACCCCAACCGGGAGGAGCCAGAGGacggaggaggagacggagacGGAGCGGACGAGCCCAGGACCTCGTAAACCTCTCCGGGCGGTGCCTTTTTCGACGGGCTCGGCCTTTCGAACCGGGGGAAAGGGGAGGCCGAAACCCGCGACGCGTTGAACGCCCCACTCCCAGGACAATCCCATTCGAACatgcagaataaaaaacaaccacacTAACAAGA

Function

NR:

description
PREDICTED: uncharacterized protein LOC105031478 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011712 True 908 mRNA 0.65 7 2777860 2782298

Neighbor

gene id symbol gene type direction distance location
AMCG00011714 NA coding upstream 33287 2734189 ~ 2744573 (+)
AMCG00011705 NA coding upstream 139242 2637097 ~ 2638618 (+)
AMCG00011706 NA coding upstream 146800 2619628 ~ 2631060 (+)
AMCG00011701 NA coding upstream 240399 2531348 ~ 2537461 (+)
AMCG00011704 NA coding upstream 250813 2519272 ~ 2527047 (+)
AMCG00011717 NA coding downstream 22793 2805091 ~ 2811663 (+)
AMCG00011723 NA coding downstream 147964 2930262 ~ 2938174 (+)
AMCG00011724 NA coding downstream 181932 2964230 ~ 2974831 (+)
AMCG00011733 NA coding downstream 287543 3069841 ~ 3074129 (+)
AMCG00011740 NA coding downstream 328314 3110612 ~ 3111553 (+)
G131992 NA non-coding upstream 116309 2661257 ~ 2661551 (+)
G131988 NA non-coding upstream 130420 2645548 ~ 2647440 (+)
G131983 NA non-coding upstream 142910 2634331 ~ 2634950 (+)
G131942 NA non-coding upstream 313254 2463991 ~ 2464606 (+)
G131941 NA non-coding upstream 315510 2462145 ~ 2462350 (+)
G132215 NA non-coding downstream 206448 2988746 ~ 2989007 (+)
G132268 NA non-coding downstream 321862 3104160 ~ 3115307 (+)
G132270 NA non-coding downstream 387440 3169738 ~ 3250107 (+)
G132293 NA non-coding downstream 456188 3238486 ~ 3245852 (+)
G132433 NA non-coding downstream 785589 3567887 ~ 3568440 (+)
AMCG00011713 LOC107377402,LOC101163851,LOC108249525,LOC106525311 other upstream 77470 2691539 ~ 2700390 (+)
G131981 neurl4,LOC102791343 other upstream 161799 2615453 ~ 2616061 (+)
AMCG00011702 NA other upstream 226823 2541795 ~ 2551037 (+)
AMCG00011695 NA other upstream 316135 2451363 ~ 2461725 (+)
G131898 bola2,LOC105020731,LOC105907194,LOC108436240,LOC104959592 other upstream 457827 2318010 ~ 2320033 (+)
AMCG00011718 naa38,lsmd1 other downstream 70519 2852817 ~ 2858284 (+)
G132058 NA other downstream 94976 2877274 ~ 2880260 (+)
G132072 NA other downstream 156072 2938370 ~ 2941171 (+)
G132221 NA other downstream 219134 3001432 ~ 3004662 (+)
AMCG00011735 NA other downstream 296119 3078417 ~ 3101137 (+)

Expression


Co-expression Network