AMCG00011738 (her8a,LOC105027206,LOC107666285,LOC107750660,LOC107563304,LOC108443965)


Basic Information

Item Value
gene id AMCG00011738
gene name her8a,LOC105027206,LOC107666285,LOC107750660,LOC107563304,LOC108443965
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 3126524 ~ 3128860 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011738
ATGACGGCGTCCCATTTGGAAAACACCTCTGAGCGGAATTACAGCGCCAAGGAAGAGCGGAAGCTGCGGAAGCCGCTGATCGAGAAGAGACGGCGGGAGCGCATCAACAGCAGCCTCGAGCAGCTGAAGGGCATCATGGTGGACGCGTACAACCTGGATCAATCCAAGCTGGAGAAGGCAGATGTGCTGGAGATCACAGTGCAACACATGGAAGCTCTGACCAAGAGCCACTCGACAGGTGGCGGTAAGCAAGGCCTGGAGTCACGCCAGCGCTACAGTAGCGGCTACATCCAGTGCATGCACGAGGTCCACAACCTGCTGCTCAGCTGCCCCGGCCTGGACAAGAACATGGGGGCCCGCCTCCTCAACCACCTGCTCAAGTCCCTGCCGCAGACCGTGGGCGAGCCTGGGGCTGCGGCTGGCCCTACTCACCCCGGCCCCGGCCCCAGCAGCGGCCTGAACTCCAGCCTACCCCTGCCTGCTGCCCCATCCCCTGTCCCGGCTGCCACCCCTGTCTACCAGCCCCTCAGCGTCCACCTCCCGGCCTCCTGCGCCCGCTCCCCCAGCCCCCAAATCTCCCCCATCGCCCTCTATCGCTCTTCGGATGAgggcagcagtagcagtagcccttcccccccaccacccagcTCACCCTCCATCAGCCCCCAGGGAGCGCCCTCCCCTGGGCTGCAGCTGTACCCTGGGGTCGACCCCTCCATGTGGAGACCTTGGTGA

Function

symbol description
her8a Enables DNA-binding transcription factor activity, RNA polymerase II-specific. Involved in negative regulation of transcription by RNA polymerase II. Acts upstream of or within glial cell differentiation; negative regulation of neurogenesis; and neuron differentiation. Located in chromatin. Is expressed in several structures, including anterior neural keel; anterior neural rod; central nervous system; neural tube; and posterior neural keel.

NR:

description
transcription cofactor HES-6

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0050768 negative regulation of neurogenesis biological_process
GO:0042063 gliogenesis biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0046983 protein dimerization activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011738 True 735 mRNA 0.65 4 3126524 3128860

Neighbor

gene id symbol gene type direction distance location
AMCG00011740 NA coding upstream 14971 3110612 ~ 3111553 (+)
AMCG00011733 NA coding upstream 52395 3069841 ~ 3074129 (+)
AMCG00011724 NA coding upstream 151693 2964230 ~ 2974831 (+)
AMCG00011723 NA coding upstream 188350 2930262 ~ 2938174 (+)
AMCG00011717 NA coding upstream 314861 2805091 ~ 2811663 (+)
AMCG00011737 LOC105891152 coding downstream 12582 3141442 ~ 3152046 (+)
AMCG00011739 NA coding downstream 35054 3163914 ~ 3168954 (+)
AMCG00011736 cssa04h17orf49,zgc:103508,LOC106567897,LOC108424543,LOC107720679,LOC107742347 coding downstream 45870 3174730 ~ 3181725 (+)
AMCG00011743 NA coding downstream 101284 3230144 ~ 3230770 (+)
AMCG00011749 NA coding downstream 280613 3409473 ~ 3412144 (+)
G132268 NA non-coding upstream 11217 3104160 ~ 3115307 (+)
G132215 NA non-coding upstream 137517 2988746 ~ 2989007 (+)
G131992 NA non-coding upstream 464973 2661257 ~ 2661551 (+)
G131988 NA non-coding upstream 479084 2645548 ~ 2647440 (+)
G131983 NA non-coding upstream 491574 2634331 ~ 2634950 (+)
G132270 NA non-coding downstream 40878 3169738 ~ 3250107 (+)
G132293 NA non-coding downstream 109626 3238486 ~ 3245852 (+)
G132433 NA non-coding downstream 439027 3567887 ~ 3568440 (+)
G132466 NA non-coding downstream 540821 3669681 ~ 3672437 (+)
G132468 NA non-coding downstream 564645 3693505 ~ 3713698 (+)
AMCG00011735 NA other upstream 25387 3078417 ~ 3101137 (+)
G132221 NA other upstream 121862 3001432 ~ 3004662 (+)
G132072 NA other upstream 185353 2938370 ~ 2941171 (+)
G132058 NA other upstream 246264 2877274 ~ 2880260 (+)
AMCG00011718 naa38,lsmd1 other upstream 268240 2852817 ~ 2858284 (+)
G132271 NA other downstream 72514 3201374 ~ 3204597 (+)
AMCG00011770 NA other downstream 763521 3892381 ~ 3897596 (+)
AMCG00011771 NA other downstream 774815 3903675 ~ 3977662 (+)
AMCG00011806 NA other downstream 1986230 5115090 ~ 5120098 (+)
AMCG00011830 vmhcl,LOC107560354 other downstream 2630998 5759858 ~ 5761248 (+)

Expression


Co-expression Network