AMCG00011736 (cssa04h17orf49,zgc:103508,LOC106567897,LOC108424543,LOC107720679,LOC107742347)


Basic Information

Item Value
gene id AMCG00011736
gene name cssa04h17orf49,zgc:103508,LOC106567897,LOC108424543,LOC107720679,LOC107742347
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 3174730 ~ 3181725 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011736
CTAGGACTTCCCTGCCGGAGCGCAAGTTGTTGGCtgcaaatttatttatttaattatttctggcCCAAATTGGCTAAAATGGAGGCCCGCGAAGGGTTACCAACTCCGAAACCTCTAGGAAAGCACCGGGAATGAAAACGTACCCGCACGGGTGGGATATTACAAAGCATGCAAACCCCCGGGATCGTGTATGTTTGCGCAAAGCTTAATAAAGGGAAACACTGTGGTCGCAGGCCCGGGTGTATTGTCTTCCATTGAATGGAGCCGCACGGTTTCCCCCCTAAACGCGATGCTACTTTTTCAAAGCGCTTAGCTGGTTTTTACAGCGTTAACTGCGTGATCCCGAGTGTGTCATTCGCCTGGGATGCGACAGAAAAGAGtttgtaatgtgtatttttcttaaagctGTACATTGTTAACGGCTGTTCGCTGCGTGGAGCCTTTTAGTGCTGCAAAGTGACACTAGTAGTAGGATGCATTTTTCCGGCTGAACTTATTattgttgcttgtttttatattttgaccggtttttgttttgcaccagCCGCTCAGCCTGTGCCACTGCGGGTGCTGTAGGTGCGCAgggtttccttttctgtttttgaaagaattcaGCGGGAAAATGACTTCAGCCTCGACAAAGGTAGGGGAGATCTTCTCGGCGGCGGGCGCTGCCTTCACCAAGCTGGGCGAGCTGACCATGCAGCTGCACCCTGTGGCCGACTCCAGCCCTGCGGGGGCCAAGTGGACGGACACGGAGATCGAGATGCTGCGCACGGCGGTCCGGCGCTTCGGGGACGACCTCAACAAAATCAGCTCCGTCATCAAGGACCGCACTCGTGGCCCCCGCCCCGGCCGTCATCACCGTGCCGACCTCGCAGACGTGACCCTGAGTGCCCTCAACGACTCGGACGTTAACAGCGACCTGGTGGACATCGAGGGGCTGGGGGAGGGGTCTGCCTCCAAGAAACTGAACTTCGATCAAGACAGCCTCAATCTGGACTCCAGTCTGATCATGAACTCCAGTgacctccccctcctctcacGCTGACCCCCCCCATCAGACCCTATGGCTCTCCCCCAACCCCACCCTCCCCCCGC

Function

symbol description
zgc:103508 Predicted to be part of MLL1 complex and NURF complex. Orthologous to human C17orf49 (chromosome 17 open reading frame 49).

NR:

description
PREDICTED: chromatin complexes subunit BAP18

GO: NA

KEGG:

id description
K23406 BAP18; chromatin complexes subunit BAP18

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011736 True 1101 mRNA 0.55 6 3174730 3181725

Neighbor

gene id symbol gene type direction distance location
AMCG00011739 NA coding upstream 5776 3163914 ~ 3168954 (+)
AMCG00011737 LOC105891152 coding upstream 22684 3141442 ~ 3152046 (+)
AMCG00011738 her8a,LOC105027206,LOC107666285,LOC107750660,LOC107563304,LOC108443965 coding upstream 45870 3126524 ~ 3128860 (+)
AMCG00011740 NA coding upstream 63177 3110612 ~ 3111553 (+)
AMCG00011733 NA coding upstream 100601 3069841 ~ 3074129 (+)
AMCG00011743 NA coding downstream 48419 3230144 ~ 3230770 (+)
AMCG00011749 NA coding downstream 227748 3409473 ~ 3412144 (+)
AMCG00011750 NA coding downstream 258364 3440089 ~ 3447847 (+)
AMCG00011754 NA coding downstream 266741 3448466 ~ 3448834 (+)
AMCG00011755 NA coding downstream 303037 3484762 ~ 3491555 (+)
G132268 NA non-coding upstream 59423 3104160 ~ 3115307 (+)
G132215 NA non-coding upstream 185723 2988746 ~ 2989007 (+)
G131992 NA non-coding upstream 513179 2661257 ~ 2661551 (+)
G131988 NA non-coding upstream 527290 2645548 ~ 2647440 (+)
G131983 NA non-coding upstream 539780 2634331 ~ 2634950 (+)
G132293 NA non-coding downstream 56761 3238486 ~ 3245852 (+)
G132433 NA non-coding downstream 386162 3567887 ~ 3568440 (+)
G132466 NA non-coding downstream 487956 3669681 ~ 3672437 (+)
G132468 NA non-coding downstream 511780 3693505 ~ 3713698 (+)
G132480 NA non-coding downstream 572222 3753947 ~ 3785196 (+)
AMCG00011735 NA other upstream 73593 3078417 ~ 3101137 (+)
G132221 NA other upstream 170068 3001432 ~ 3004662 (+)
G132072 NA other upstream 233559 2938370 ~ 2941171 (+)
G132058 NA other upstream 294470 2877274 ~ 2880260 (+)
AMCG00011718 naa38,lsmd1 other upstream 316446 2852817 ~ 2858284 (+)
G132271 NA other downstream 19649 3201374 ~ 3204597 (+)
AMCG00011770 NA other downstream 710656 3892381 ~ 3897596 (+)
AMCG00011771 NA other downstream 721950 3903675 ~ 3977662 (+)
AMCG00011806 NA other downstream 1933365 5115090 ~ 5120098 (+)
AMCG00011830 vmhcl,LOC107560354 other downstream 2578133 5759858 ~ 5761248 (+)

Expression


Co-expression Network