AMCG00012397


Basic Information

Item Value
gene id AMCG00012397
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 17552586 ~ 17578771 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012397
ATGGGCACTTGCTGTGCCAGCCGCGgactcctcctgctcctcctcttgGCGCTGGCGGAAGCGGGCCGGTCCCGGGTCCCAGCGGCGCAAGGCGTTGGGGGCCGGCGAGAGTCCTGGCACTTGCCCCGCGGCGCTACCGAGGTGACCCTGGCGGTGATCCTGCCGCGCAACAACACGGCCTACCCCTGGGCCTGGCCGCGAGTGGGGCCCGCCCTGGACCTGGCGCTGCGCCGCATCAACGCCGACCCCGGCCTCCTGCCCCGGCACCATCTGCACTACGTCTTCGAGAGCAGCGAGGACGAGGGCGGCAACTGCTCGGACTACATCGCCCCGCTCAAGGCCGTCGACCTCAAGTTCTCGCACAGCCTCTGGGCCTTCGTGGGGCCCGGCTGCCACTACGCCGCCGCGCCGGTGGGCCGCTTCACCTCGCACTGGGGCGTGCCCATGGTGACGGCGGGCGCGGCGGCCTACGGCTTCTACAACCAGGGCAAGGTGTACTCGTCCATCACCAACACGGGCCCCACGGACAAGAAGCTGGGCGAGCTGGCCTGGCACATGCACCAGCACTACGGCTGGCGGGAGCAGGCCATGCTGGTGTTCGTGGATGACAAGATGGACGACCGGCCGTGTTACTTCGCCGCTGAGGGGCTGTACGAGGAGCTGACACGGGCCAACGTCACCATCGGAGAGTCGCTGTTCCCGGACGGCTCGGGCCAGGTGGACTACGACAAGCTGCTGCACGACATCCTCACCCAGGGCCGCGTGGTGTATGTGTGCTGCCCGCGGGACACGTTCCGGCAGCTCATGGTGCGCTTCCGCAAGGCCAACATGCCGCTGGATGAGTACGCCTTCTTCTACATCGACGTGTTCGGCTCCAGCCTGGACCCCCCGCCCGCCCGGCCCTGGGCCCGCAACGACCCGGACGACCAGCTGGCCAAGGAGGCCTTCCAGGCTGTGACGATCATCACCTACAGTGAGCCCCAGAACCCGGAGTACCAGGAATTCGTGAGGGACCTGCGCAGAGAGGCCCGACGCAACTTCAGTTTCGAGATCGAGGACTCGCTGaTGAACATGATCGCGGGGGGCTTCTATGACGGCGTGATGCTGTACAGCCTGGCGCTGAACGAGTCCCTGGGCCACAGCAGCGACATGCCGCCCGGGCCCTCCATCACCCGCAGGATGTGGAACCGCACCTACCACGgAGTGACAGGTCTGATGCAGATCGATGAGAATGGAGATCGTGAGATTGATTACTCCCTGTGGGACATGACTGACACCGACACTGGGGAGTTCCAGATCGTGTCTGTGTATAACGGGACGCTGCACAGCCTGACCTCTGTCCAGGGCAGGGAGATCCTGTGGCCGGGGGGCAGCATCCCTCGAGACATCCCCTTCTGCGGCTTCAAGAATGAGAACCCCAGCTGCACCCCCAAGACCATCCCGATGCTGCAGATGATGTCCATCGTAGTCTTCATCATCCTCTTCATCATCACCTTCATCACCGTCTTCATCTACAGGTCAGTGTGGAATCGTGCCACGGCCACCTTCGATTGGGCAGGCCGAGGGAGGGCCGAGCAAGGTCACCTGACCCTGAGGGGGTCCAACTACGGGTCACTCTTGACAACCGAGGGCAACTACCAGATCTTCGCCAAGACTGGCTACTACAAGGGCATGGCGTTCCTGCACAACAGTGTGATTGTGTCCCACGGGAACCTCAAGTCCTCCAACTGCGTGGTGGACAGCCGCTTCGTGCTGAAGATCACGGACTACGGGCTGGCCAGCTTCCGTGCTGACGCGGACGGGGAGGACAGCCACTCCTATTTTGCCCggAGGCTGTGGACATCCCCTGAGCTGCTCCGAGCCGAGAGGCCCCCCCCGTGCGGGACACAGAAGGGGGACGTGTTCAGCTTTGGCATCATCCTGCAGGAGATCGCGCTGCGCAGGGGCGTCTTCTACCTGGAGGGGGAGCCGCTGAGCCCCAAAGAGATAGTAGACCAGGTGGCCCTGGGGCAGCGGCCGTTCCTGCGACCCACTGTGGAGACGATCGGGGATGCATACATGGTGGTGTCCGGGCTGCCAGTGCCCAACGGGCGTCTGCACGGGCGCGAGGTGGCACGAATGGCGCTGGCGCTGCTGGAGGCCGTGCGCTCCTTCAGGATCCGACACCGGCCCCAGCAGCAGCTCTGCCTGCGCATCGGCATCCACAGCGCGCTGAAGATCCACGTGTCGGCGGCGACCCACGTGGTGCTACAGGAGCTCAGCGGGTTCGAGCTGGAGCTGCGCGGAGAGGTGGAGATGAAGGGCAAAGGGAAGATGACCACGTACTGGCTGCTGGGGGAGAGCAGCGCCGCagtgtga

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012397 True 2358 mRNA 0.65 13 17552586 17578771

Neighbor

gene id symbol gene type direction distance location
AMCG00012396 ilf2,LOC106588321,LOC106569884 coding upstream 14957 17529773 ~ 17537629 (+)
AMCG00012395 chrnb2,chrnb2b,LOC106575520,LOC104959165 coding upstream 48014 17497454 ~ 17504572 (+)
AMCG00012386 NA coding upstream 172465 17374960 ~ 17380121 (+)
AMCG00012388 krtcap2 coding upstream 181033 17369263 ~ 17371553 (+)
AMCG00012389 LOC107549236 coding upstream 262691 17269066 ~ 17289895 (+)
AMCG00012406 ints3,LOC106588323 coding downstream 2605 17581376 ~ 17598072 (+)
AMCG00012404 syt11 coding downstream 26962 17605733 ~ 17609903 (+)
AMCG00012407 rit1,LOC107672884 coding downstream 35723 17614494 ~ 17621187 (+)
AMCG00012405 NA coding downstream 78687 17657458 ~ 17662757 (+)
AMCG00012403 NA coding downstream 88572 17667343 ~ 17676356 (+)
G136539 NA non-coding upstream 63042 17489319 ~ 17489544 (+)
G136538 NA non-coding upstream 63759 17488350 ~ 17488827 (+)
G136490 NA non-coding upstream 89901 17419215 ~ 17462685 (+)
G136486 NA non-coding upstream 150226 17402019 ~ 17402360 (+)
G136458 NA non-coding upstream 211850 17339578 ~ 17340736 (+)
G136564 NA non-coding downstream 44342 17623113 ~ 17635961 (+)
G136568 NA non-coding downstream 69857 17648628 ~ 17649107 (+)
G136571 NA non-coding downstream 84662 17663433 ~ 17664170 (+)
G136718 NA non-coding downstream 322137 17900908 ~ 17901656 (+)
G136842 NA non-coding downstream 683126 18261897 ~ 18269507 (+)
G136558 NA other upstream 4618 17547368 ~ 17547968 (+)
AMCG00012401 adar other upstream 29765 17509372 ~ 17522821 (+)
G136489 NA other upstream 76489 17411761 ~ 17476097 (+)
G136499 NA other upstream 86527 17459484 ~ 17466059 (+)
AMCG00012387 NA other upstream 163787 17384936 ~ 17388799 (+)
G136566 NA other downstream 66870 17645641 ~ 17646905 (+)
G136569 cks1b,LOC103032043,LOC108433716,LOC103358762 other downstream 70494 17649265 ~ 17653462 (+)
AMCG00012417 NA other downstream 176649 17755420 ~ 17760282 (+)
G136641 NA other downstream 185374 17764145 ~ 17767531 (+)
AMCG00012423 LOC102799202,LOC107564869 other downstream 213480 17792251 ~ 17795244 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000054_10269355_10363708 NPR1B, NPR1, NPR1A coding CI01000054 null 10268720 ~ 10364149 (-)