AMCG00012407 (rit1,LOC107672884)


Basic Information

Item Value
gene id AMCG00012407
gene name rit1,LOC107672884
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 17614494 ~ 17621187 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012407
GCCACTGTGGCCCTCAGGCTGTGGACGCCAGCTGGATACTGGGCTGCCAGTGATATCGAGCTGGTCAACTCTCCGGGCAGGActgggactgctctctctcGGAGTGCAACACAGCTGGGGACAAATGGGCACCACACACGACAAATCCCAACAAGCGCAATCAGCGCCGACGCAAGCGACGCTAGTGACGTCAAAgtgcgTGGGAGCCGCGGAGTGGAGTTGGTGCGGGACGGAGCTCCGCGTCCGGATTATAACCACCGCAAACCCCGACCCGCAGCATGCAGCGCCGCGGACACTGACACCGgctcCAGCAGTGTGATGGAGTCATTGCGGGGGCCGGGGGGTGCGACAGGGGCGTCCCGAGAGTACAAACTGGTGATGCTGGGAGAGGGAGGTGTCGGCAAGAGTGcTATCATCATGCAGTTTATCAGCCACAGATTCCCAGAGGACCATGACCCCACCATCGAGGACGCCTATAAGACTCAGATTCGGATTGATGATGAACCGGCCAACCTGGACATCCTGGACACTGCAGGACAGGCGGAGTTCACGGCGATGAGAGACCAGTACATGCGCGCAGGTGAGGGCTTCCTCATCTCCTACTCCATCACTGACCGGCGCAGCTTCTCTGAGGCACGTCAGTTCCACCAGCTCATCCAGCGCGTGCGCCACTCCGCCCACACGCCCGTCGTGCTGCTCGGGAACAAGTCCGACCTGGCGCACCTGAgacagGTGTCAATAGAGGAGGGCAAGAGCCTGGCGAGGGAGTTCCAGTGCCCGTTTTTCGAGACGTCGGCCGCCTACCGGCACAACATCGACGAGGTCTTCGCCGCCCTGGTGCGCCAGATCCGACGCCGCGAGAACGAAGCCGCCCAATCAGGGGACAGCAAGACCCGGGGCCACGCCTCCCTCTGGACACGCCTCCGAGCGCCCTTCCGCAGGAAAAAACACCCCCAGCACTGAGGGAGTGGGggatttgAAGATCTGCAGAGACCAGGAAAGTCAGAGAAAGTGAGTGATGGCAGGAGAGAGGGACCAAGAgaaagtgggagagagagagagagagagagagaggaaagagaagaaACTGAGAAAATGACAGGTAAGGGGgtgaagcagagagagacagtccGGTGCTTCTGAGATTTTGAGGCAGGAAACGGGAAATGAAGTGATAGagaaggggaggagagagagagagagagggaggggattCGGGGAGAAGGGGGCTCACTGACCTCCCCTTTAAACTTGCCTTAACAGATAACACCTGTCCCTGTTCTGTTCCTCATCCTCCCCTTTAACTGGTGTTTGGGCATGATTTTTTGTTGTcggtttttttttctgaataaagaaaggaaatgatGTCAGGAGGACGGAGGACAGATACCAAAAGAATAGAGTGTAGTGTAGCATAGTTTAGGTCAGTACAGTATAGGACAGTGCACTATAATACAGTACGGCGCAGTATaacacagtaaagtgcagtatattacagtacagtgcagtatactacagtacagtgcagtatagtccACAGTGCGAATGCCCCCCCACTCTCTTTACTGTAAGCACTAAAGCCTGCGTTGTTTTTCATAAGGGGCCATATTATAGAACCCAGTTCCcactttgtctgtctgtttgtatgtgtctgtaattgtgtttttcccctaatttattttgtgttaatgaGTTAAATAAAAGGGTTGAATTTC

Function

symbol description
rit1 Predicted to enable GTPase activity; calmodulin binding activity; and guanyl ribonucleotide binding activity. Acts upstream of or within embryonic viscerocranium morphogenesis and heart development. Predicted to be located in membrane. Predicted to be active in plasma membrane. Human ortholog(s) of this gene implicated in Noonan syndrome 8. Orthologous to several human genes including RIT1 (Ras like without CAAX 1).

NR:

description
GTP-binding protein Rit1

GO:

id name namespace
GO:0007507 heart development biological_process
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0048703 embryonic viscerocranium morphogenesis biological_process
GO:0016020 membrane cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07832 RIT1; Ras-like without CAAX 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012407 True 1715 mRNA 0.55 8 17614494 17621187

Neighbor

gene id symbol gene type direction distance location
AMCG00012404 syt11 coding upstream 4591 17605733 ~ 17609903 (+)
AMCG00012406 ints3,LOC106588323 coding upstream 16422 17581376 ~ 17598072 (+)
AMCG00012397 NA coding upstream 35723 17552586 ~ 17578771 (+)
AMCG00012396 ilf2,LOC106588321,LOC106569884 coding upstream 76865 17529773 ~ 17537629 (+)
AMCG00012395 chrnb2,chrnb2b,LOC106575520,LOC104959165 coding upstream 109922 17497454 ~ 17504572 (+)
AMCG00012405 NA coding downstream 36271 17657458 ~ 17662757 (+)
AMCG00012403 NA coding downstream 46156 17667343 ~ 17676356 (+)
AMCG00012402 NA coding downstream 55478 17676665 ~ 17679965 (+)
AMCG00012410 NA coding downstream 62207 17683394 ~ 17688471 (+)
AMCG00012413 ssr2,LOC106570196,LOC106588555,LOC107748705 coding downstream 67931 17689118 ~ 17691283 (+)
G136539 NA non-coding upstream 124950 17489319 ~ 17489544 (+)
G136538 NA non-coding upstream 125667 17488350 ~ 17488827 (+)
G136490 NA non-coding upstream 151809 17419215 ~ 17462685 (+)
G136486 NA non-coding upstream 212134 17402019 ~ 17402360 (+)
G136458 NA non-coding upstream 273758 17339578 ~ 17340736 (+)
G136564 NA non-coding downstream 1926 17623113 ~ 17635961 (+)
G136568 NA non-coding downstream 27441 17648628 ~ 17649107 (+)
G136571 NA non-coding downstream 42246 17663433 ~ 17664170 (+)
G136718 NA non-coding downstream 279721 17900908 ~ 17901656 (+)
G136842 NA non-coding downstream 640710 18261897 ~ 18269507 (+)
G136558 NA other upstream 66526 17547368 ~ 17547968 (+)
AMCG00012401 adar other upstream 91673 17509372 ~ 17522821 (+)
G136489 NA other upstream 138397 17411761 ~ 17476097 (+)
G136499 NA other upstream 148435 17459484 ~ 17466059 (+)
AMCG00012387 NA other upstream 225695 17384936 ~ 17388799 (+)
G136566 NA other downstream 24454 17645641 ~ 17646905 (+)
G136569 cks1b,LOC103032043,LOC108433716,LOC103358762 other downstream 28078 17649265 ~ 17653462 (+)
AMCG00012417 NA other downstream 134233 17755420 ~ 17760282 (+)
G136641 NA other downstream 142958 17764145 ~ 17767531 (+)
AMCG00012423 LOC102799202,LOC107564869 other downstream 171064 17792251 ~ 17795244 (+)

Expression


Co-expression Network