AMCG00012405


Basic Information

Item Value
gene id AMCG00012405
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 17657458 ~ 17662757 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012405
CCGACAATAAGACTATCAAAATGCATGATTGATTATTGATTAGCAGCGAGGCGTAGTTCTAGAAGACACTGAAAGACGGATGCACAATCAGGAATGTAGGGGGCGCTCTTTCTCGCATAATACATTTGTGGGGAGGTCATTGTGTACGGACGTCGTTGTGTGGGGAGGTTATTGGGTGGTTAAGCCATTTTGTGCTGAGGTTGCCCCTTTATCTAGCAATAGGTTTGCTAATTagagtttttgtttaattgcttaattagaccACTCACTCTTTCTATATCTCTCtgcacctccctccctctctttctttctgtgtctgccTGTCAGTGTGGGAGCTTGTTTGACCTGGTTTCCCTctcggtgtgtgtgtttggatgcTGCGTGTCGTCCTGCCAGGGTTCCGAGCGGCCAAGAGAGTCAGACGATTGGGAGGCCAGTTGTCCGTTATGGCCCAGCCCGGCTGCTGCTTCGGCACCTCCGAGACAGCAGGGAGCGCCGTCACCTCCGGCCCCAACCGTGACTCTACAGGAACGGGCGATGGCGATGTCAGCGGTGCCTCCGGCGGTGAGGCCTCCGAGACACAAGGGGGCACTGTGACAGCAGCCATTATCATCATCGGAGACGAGATCCTTAAGggTCACACTCAGGACACTAACTCCGGGTTTCTGTGCCGGGGCCTGCGCGCAGTGGGGGTGAGTGTGCGGCGCGTGTCGGTCATCGGGGACGACGTGGAGGCCATCGCCGAGGAGGTGGCCACCACTGCGCCCCGCCACCACCTGGTCCTCACCTCCGGCGGCATTGGCCCCACCCACGATGACATCACCTTCGAGGGCGTGGCCCGGGCCTTCCAGGAGCCCCTGCAGCCCCATCCCGAACTCACCAGCCTGGTGCAGCGGTTCTTCGGCGAGTCGGACCCATCCAGCGCCCCGATGAAGCTGGCTCTAGTCCCGGCCTCTTCCCGCCTGCACTACGGCTCCGACCTGCAGACCGGCCGGCCCCTGCGCTTCCCCCTGGTCAGCGTGCGCAACGTGTACGTCTTCCCCGGCATCCCCTCGCTGCTGGAGCGCGCCTTTGAGGGTCTGCAGCACCTGTTCTCGAACCCGCGCCAGAGCTTCTATTCGGCGGAGCTGTTCGTGGATGCGGACGAGGCGGCCCTGGCACCGGCGCTGACCCGGGCTCAGAGGGCCCTGGGGGGCGCGGTGTCGCTGGGCTCCTACCCGGACTGGCTGGCCAACTACCACCGGGTCCGGCTGGTGCTGGACTCCGACTGCCCCGCCCGGCTCGACCGCGCCCGCCACGCGCTGCTGGAGGCCCTGCCGCCCGGgtACTCGGTGGAGCTGTTCTCGGTGGAGGGCAGTATCCTGGAGGCGCtgacagagctgcagcagcGCCGGCCCGAGCTGCAGGCCGTGCTCATGGGTACCCGGCGCACGGACCCGTACTCCCGCAGCCTGACGCCGCTGTGCCCCACCGACCCCGGCTGGCCCAGCTACATGAGGGTCAGCCCCCTGCTGGTGAGCCCGAGGCACTGTgtctacacatacacacacacacacacacaatacacacagcacacactttacACATCTCTGGGCAGCATGGAGAACACCAGCAAGAATCCCGGGCTGCGATTCATTGACGAGAGGGGCGTGGTCCGGTATCGGCCCGCCTACCAGCTGGAGAACGAGGAGGAGGAGCGCAACTCCAGGAAGTGACAGAAGCGACCAGCAGGATGTGGGGCATCAAGGGGAAGAGAGACGGAAAGAGACATGCAGATGGAGGGAGATGAGAAAAGACCAAACTTGCAGGGTTGAGTGAGACAGAGGGAGCGAGATGGGGTTAATGAGAATGaaagaagggggagagagagagagagagagaacagggctAATGATAGACAACAGTTATATATGAAAGAATTGACACTATGGAAGGTTTTCCTGAGGTTCTAGAGCCCCCCAGTGTTCCagtgaggaggggagggagatgATAAATGATTCTAGAATTAATAACCAAATTATTACTGATAATGGTTCTGaattttgtttacctttttcAAGAAttgctgattttaaatatattattaacaatatttattgtaacatttttatttgattttatgcTGTATGATTATTGTCTGATAAActgtgaatttgtattattattatgtgaaataaataatttcgaTGAGAGAA

Function

GO: NA

KEGG:

id description
K00953 FLAD1; FAD synthetase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012405 True 2195 mRNA 0.57 6 17657458 17662757

Neighbor

gene id symbol gene type direction distance location
AMCG00012407 rit1,LOC107672884 coding upstream 36271 17614494 ~ 17621187 (+)
AMCG00012404 syt11 coding upstream 47555 17605733 ~ 17609903 (+)
AMCG00012406 ints3,LOC106588323 coding upstream 59386 17581376 ~ 17598072 (+)
AMCG00012397 NA coding upstream 78687 17552586 ~ 17578771 (+)
AMCG00012396 ilf2,LOC106588321,LOC106569884 coding upstream 119829 17529773 ~ 17537629 (+)
AMCG00012403 NA coding downstream 4586 17667343 ~ 17676356 (+)
AMCG00012402 NA coding downstream 13908 17676665 ~ 17679965 (+)
AMCG00012410 NA coding downstream 20637 17683394 ~ 17688471 (+)
AMCG00012413 ssr2,LOC106570196,LOC106588555,LOC107748705 coding downstream 26361 17689118 ~ 17691283 (+)
AMCG00012412 NA coding downstream 37389 17700146 ~ 17713310 (+)
G136568 NA non-coding upstream 8351 17648628 ~ 17649107 (+)
G136564 NA non-coding upstream 21497 17623113 ~ 17635961 (+)
G136539 NA non-coding upstream 167914 17489319 ~ 17489544 (+)
G136538 NA non-coding upstream 168631 17488350 ~ 17488827 (+)
G136490 NA non-coding upstream 194773 17419215 ~ 17462685 (+)
G136571 NA non-coding downstream 676 17663433 ~ 17664170 (+)
G136718 NA non-coding downstream 238151 17900908 ~ 17901656 (+)
G136842 NA non-coding downstream 599140 18261897 ~ 18269507 (+)
G136848 NA non-coding downstream 632458 18295215 ~ 18317076 (+)
G136866 NA non-coding downstream 770813 18433570 ~ 18470784 (+)
G136569 cks1b,LOC103032043,LOC108433716,LOC103358762 other upstream 3996 17649265 ~ 17653462 (+)
G136566 NA other upstream 10553 17645641 ~ 17646905 (+)
G136558 NA other upstream 109490 17547368 ~ 17547968 (+)
AMCG00012401 adar other upstream 134637 17509372 ~ 17522821 (+)
G136489 NA other upstream 181361 17411761 ~ 17476097 (+)
AMCG00012417 NA other downstream 92663 17755420 ~ 17760282 (+)
G136641 NA other downstream 101388 17764145 ~ 17767531 (+)
AMCG00012423 LOC102799202,LOC107564869 other downstream 129494 17792251 ~ 17795244 (+)
G136658 NA other downstream 178176 17840933 ~ 17843921 (+)
G136720 cct3,tcpg,LOC107597996,LOC107587818,LOC107741740,LOC107671634,LOC107704884 other downstream 240075 17902832 ~ 17903810 (+)

Expression


Co-expression Network