G132820


Basic Information

Item Value
gene id G132820
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 5021199 ~ 5066461 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU166526
GGGAAAATtgtgaattattgttttttgcctgtttttttaaaacTCTTAGGTTAAAGAAGGAGGATCATCATTTTCGTTCATTTCTATAGTTAgcacacattaaatgtataatgaaaacacaattttcagcAAATTAAATCATACGATGAAAACCAAATATAAATGTTGCCAGAGCTgtgatatgtaaaataataattacagtacagCCTTCAATAAATtctaaattatttcacaatggTTGTAATAAGACtttcataatgtaaaacatCAATAAGCTTGTGGCGGCGTATTTATAAACAATGTTGTTTGGGCGCCAGGTAGGTTATGCctagtacataaataaatcacaatctATTGCATATTATAGTGGAGTCAGACTTTACTTTGCTGTGCATGTGCATTCATTTCCACTACGGCAGGTCTTTATAGCCCAAAACACATTACATagttgaaataataaacaaacaaagtaagaaaacaaaacacattcaaataagaaactaaacagcaaaaggaaacaaatcacTCCCGTCCATTTCTGCATATACATTCCGATTCATCGTGTGAATCCTGAAGCAGGGTCTAAAGCATACAGTGTAACATAAGAGTACAAAGTCAGCTAAGCCAGGCTGAAGATTAAAGCCTTGAGCATGGAACACCTTCAGTACACAGAAACTGTACAGCAATCTCTCCTTCCGCCTTAAACGTGCAGCAGTGCAGCAATGTCTCTTTCTGCCTTGAGCGTGGAGTGCGTTCAATAAGCAGGAACAGTTCAGCAAGTCTCTTTCCCGCAACAACCCAACACAAAATGAATCAATCACCCGGAACAGGAAGTCAGCTCCCCTCTCATTGTTACACACCGTGGGTTTTAGGAGCGCAACCTGACTTGCATATGCTAATAGCTTGAAGAGCCCTCGTACATTTACAATCAAGACCTTATATTGCCCTTCAGTTTAGGTTAAATTTGCCACAAGCTGtactatgtatttaaaaaaatgcatgtcttgAAGTTCCAAAACTcgtgtttaaatataaaaatgaaagaagcaAAACTTCTGCATCAAAACCAGTTTCATTATTCAGATGAAAGTAAGTCTATGAAATTCACAATTCCAGTGAATTGTCACGACTGATACTCTCAATCTCATATTGTACACCTTGTTGTTGGCAGGGAGTCAGGTTGTTTTCGTTAGTAATgatgcagttttcattttcacttcagCAACACAATTTTATATTAGCAGATTAAACTTTTGAACATAAAAAGGACtgcttaaaaatgtaacattttgtatttctaggCTCGCCTCCTCCtttcttaaattgtattgtgtgtgatctcttctgtgtgaatgcactgGTGATGTTTAAGGCTTGCCAAGTGAGTGAagcacttcccacactgggagcaccAGAATggcttctctcctgtgtgaaggCGCTGATGGGTTTTAAGGTTTCCTAACAAagtgaagcacctcccacactgggagcagctgaatggtttctctcctgtgtgaatgcgctggtgagatTGAAGATTTCCTAACAAAGTGAagcacttcccacactgggagcagctgaatggtttctctcctgtgtgaatacGCTGGTGATATTTAAGGCTTCCTGACTGAGTGAAAgccttcccacactgggtacacttgtatggtttctctcctgtgtgaatgtgctgaTGATTGTTAAGGTTTTCTAACACACTGAAGTTCTTCCCACACTGAGTACagctgtatggtttctctcctgtgtgaatgcgcagATGTTTTTTAAGGTTTCCTTGCTgagtgaagctcttcccacactgggggCAGCAGTATGGCCTCTCTCCTGTATGAATGTGCTGGTGAGATTCAAAGTGTCGTACATTGCTGAAGCTCCTCCCACAATGGGTACAGCAGTATGGTTTCTTTCCTGTGCGAATGCACTGATGTTTCTGATGGTCTCCTCGCtgagagaaactcttcccacattGGCGGCAAAAGTATGGTTTCTTTTTCGTATGAACGCGCTGGTGAGATTGAAGGCGTCCTGCTTGACTGAagttcttcccacactgggagcagcaaTGGCAGCCCTGATGTTTCACAGTTTCCCATGAGGGGTGAGTGTGGGAGCTGGAGGGAGTGTGGGAGCTGGAGCGTCTGGGACGCAGCTGTCTACACTGTGTCGATTGGTCCCTCCCTGCACTGAGCTCTGTTTTCAAGGCAACAGATTTGGTTCCACACTGAACACGGAGCTCAGGTTCCAGGTCACTGAGGCCTCCTGTAATATTCTCCAGTTTAGGATCACAGAGTCCATATTTCAGAAGAGTGTGAGTGTCTATCTCCGATTCATTGGACTCTGTTTTAATGTGATCAGACTCCACACTGGGTTCAGGCTGTGTTCCAGCAAAGCCCAGCTCAGCATcagctgcactgggtccacactcagatCCCAGTGCTAAACCCTCAGTCTGTGGCTCTGCCTCGTGGCCAAACTCCAGGCCACTGAGCTCCTCTTCAATGGTTCTGCTCCTGGGCCGCTCAGTTAGCCCCTCTTTATCTTCAGTGTCCTGCCCcagactggagccccACTCCTGCTCACAGGGCTGCTGCTCAGTGGGAGCTCTTTCCTCAGAGTCAGGGAGAGCACTGGCCTgtacagctcctgggggagagacaAGACATGAGAAGAGCTTTGAGGACAGCAGCTCTGTTAATTTCATCAACTACAAATATGGtgaaaaatatttgtcaacAACCTATAACGCTGAGAGCGGTGACGCAGGGTGTGGAGGAAAAACATAGAAG
>TU166528
CACACCCAACAAGAACTGCAGCCGgattaaagtacatttttattttagattttagaaaAAGAACTGATTAATGCCATAGAAATCTACACAACATGgaaacaattcaaattataatacaaatatgactCAAATATTAACACTATCAGAGAGTTATCAGTCACATTTTAACACTGTtagaaactgaaacaattaatcattaaaaaaaatcagaacaCCAACTAGAAAATCCCTGTTAGCCAAGTCATCCAGGGTAAGGATTCtcctaataattatataaactcTTTCCACAATGGGAGCATCTGTagggtctctctcctgtgtgaatgtgctggTGTTAAAGGTGTCTTGCCtgactgaagctcttcccaAACTGGGAGCAGAAGTCGGGTTTCtcccctgtgtgaatgcgctggtgaaaTGTAAGGCTCTCTGCATAGTGCGCTGATGTCTTTTAAGGCTTCCTGGCTCAGtaaagctcttcccacactgcaTACAGGTGTATGGTTTCTCTCCCGTATGACTGCGCTGGTGAGATTTAAAGTGTCCTGAATGcctgaagctcttcccacactgggagcaccAATGGCAGCCCTGATGTTTCACAGTTTCCCGTGAGGGGGGAGTGTGGGAGCTGGAGGGTCTGGGATGCAGCTGTCCACACTGTGTCGATGGGCTCTCACCCCTCCTTACACTGTCACTCCCTCCACTGAGCTCTGTTTTCAAGGAAATGGATTCTGTTCCACACTGAACACGGAGCTCAGGTTCCAGGTCACTGAGGCCTCCTGTAATATTCTCCAGTTTCGGATCACAGAGTCCATATTTCAGAAGAGTGTGAGTGTCTATCTCTGATTCATTGGACTCTGTTTTAATGTGAGCAGACTCCACACTGGGTTCAGGCTGTGTTCCAGTAGAGCCCAGCTcagcaccagctgcactgggtccacactcagaACCCAGTGCCCTGGATCCCTGTATTAAACCCTCAGTGTGTGGCTCTGCTCTGTGGCCAGACTCCAGGCCACTGAGCTCCTCTTCAGTGGTTCtactcctgggctgctcagttAGCCCATCTTTATCTTCAgtgtcctgcctcagactggagccccACTCCTGCTCACAGGGCTGCTGCTCAGTGGGAGCTCTTTCCtcagagtcagggagagcgctggcctgtacagctcctgggggagagacaAGACATGAAAAGAGCACTGAGAACAGAAGATCTGAGGAGAGGCTACTAGTACAGGTCAGAATAGCATCCAGGCAGTGTGTATCACatatctataccaaaaacaCTATCACTGTGAaacaagaaaagagagaaaccTCCATATCAACTCAATCTCAACTGTAGAAGTGAAGCGGGAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU166526 True 2810 lncRNA 0.43 2 5040958 5066461
TU166528 False 1371 lncRNA 0.47 2 5021199 5022821

Neighbor

gene id symbol gene type direction distance location
AMCG00011805 NA coding upstream 53502 4964661 ~ 4967697 (+)
AMCG00011804 NA coding upstream 140165 4876935 ~ 4881034 (+)
AMCG00011803 NA coding upstream 189974 4828434 ~ 4831225 (+)
AMCG00011801 NA coding upstream 216214 4788315 ~ 4804985 (+)
AMCG00011795 NA coding upstream 299278 4719814 ~ 4721921 (+)
AMCG00011807 NA coding downstream 96769 5163230 ~ 5165552 (+)
AMCG00011808 NA coding downstream 156036 5222497 ~ 5252656 (+)
AMCG00011813 NA coding downstream 197439 5263900 ~ 5273680 (+)
AMCG00011816 NA coding downstream 287395 5353856 ~ 5361606 (+)
AMCG00011814 NA coding downstream 337370 5403831 ~ 5410152 (+)
G132818 NA non-coding upstream 1811 5019001 ~ 5019388 (+)
G132817 NA non-coding upstream 3659 5017310 ~ 5017540 (+)
G132781 NA non-coding upstream 18478 5002394 ~ 5002721 (+)
G132758 NA non-coding upstream 170158 4850606 ~ 4851041 (+)
G132755 NA non-coding upstream 173459 4847532 ~ 4847740 (+)
G132993 NA non-coding downstream 614007 5680468 ~ 5681398 (+)
G132997 NA non-coding downstream 615612 5682073 ~ 5682808 (+)
G133014 NA non-coding downstream 705602 5772063 ~ 5799356 (+)
G133060 NA non-coding downstream 767354 5833815 ~ 5834041 (+)
G133066 NA non-coding downstream 777803 5844264 ~ 5845059 (+)
AMCG00011771 NA other upstream 1043537 3903675 ~ 3977662 (+)
AMCG00011770 NA other upstream 1123603 3892381 ~ 3897596 (+)
G132271 NA other upstream 1816602 3201374 ~ 3204597 (+)
AMCG00011735 NA other upstream 1920062 3078417 ~ 3101137 (+)
G132221 NA other upstream 2016537 3001432 ~ 3004662 (+)
AMCG00011806 NA other downstream 48629 5115090 ~ 5120098 (+)
AMCG00011830 vmhcl,LOC107560354 other downstream 693397 5759858 ~ 5761248 (+)
G133059 NA other downstream 762340 5828801 ~ 5829532 (+)
AMCG00011837 NA other downstream 820456 5886917 ~ 5888884 (+)
AMCG00011853 zfhx2,LOC108245441 other downstream 827063 5893524 ~ 5907174 (+)

Expression


Co-expression Network