G132997


Basic Information

Item Value
gene id G132997
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 5682073 ~ 5682808 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU166754
aGACCATGACATTAATTGATACTTGAACAAATGCATAGAATCTTCCACTGATTAGTAGTACTGAAGTACTGACACACTTATCAATAGGCTACATCAGCTCAGCAAAACTGTCGCAGCCTGGACTTCATTCCGTTAATAACAAGAATGATATCAAGTGTGAAATGTATTAGAAACAATACCTGAGGCTCATACATCCAGGGCACATCCACGCGTTTCTGCCCGTCGGATTTCTTGAAGGTGTAGGCGGAGAACACCGGGATGCGCTTGGCGGCGTCATAGAGGGTGGCGAAGCGCGGCTTGTTGGCGTACCTCTGGCAAATCTTCTTCAGGTTGTCGCCCTTGTACCCCACCGGCGAGGACCGCATGTACAGGAACTGCTTACAGTCTTTAAAATTGTCTCCCACGGATGCCCAAAAAAACGAAACGTGGTTGAGAAGCAGAAGTAAGACAGATGCGTGAAAGAGATTCATGTTAAGAGCCAGTTTGTCCCACTGGGAGAGGAGCCTGCGGGACACAGACAACTTCAGCTGGAAGTGATGGTGCGCTTCAGCACCTTTCTGTATGCAAACTAACcatgctgacacacacagggcGGCTGTGTCCGACCAATAATCGGCCTGGGAACACAGATAAGGACTTTCAAAACCCTCAAGATTGAAACACTGGATATGTTTTCCTGTTGTAGCCTATGACAATGTAACATTGTAATATAGTGAACTTAGAACAATATGATGCT

Function

GO: NA

KEGG:

id description
ko04142 Lysosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU166754 True 736 lncRNA 0.46 1 5682073 5682808

Neighbor

gene id symbol gene type direction distance location
AMCG00011826 NA coding upstream 53259 5623410 ~ 5628814 (+)
AMCG00011824 NA coding upstream 58712 5570374 ~ 5623361 (+)
AMCG00011823 NA coding upstream 113859 5547690 ~ 5568214 (+)
AMCG00011820 NA coding upstream 159709 5483510 ~ 5522364 (+)
AMCG00011817 NA coding upstream 205314 5472239 ~ 5476759 (+)
AMCG00011828 pabpn1,LOC107758815,LOC107589928 coding downstream 13919 5696727 ~ 5703921 (+)
AMCG00011829 NA coding downstream 32533 5715341 ~ 5716146 (+)
AMCG00011838 LOC101484004,LOC103375112,LOC102294892 coding downstream 106161 5788969 ~ 5792277 (+)
AMCG00011839 NA coding downstream 135404 5818212 ~ 5824866 (+)
AMCG00011835 psme1,LOC107691441 coding downstream 152802 5835610 ~ 5842813 (+)
G132993 NA non-coding upstream 675 5680468 ~ 5681398 (+)
G132820 NA non-coding upstream 615612 5021199 ~ 5066461 (+)
G132818 NA non-coding upstream 662685 5019001 ~ 5019388 (+)
G132817 NA non-coding upstream 664533 5017310 ~ 5017540 (+)
G132781 NA non-coding upstream 679352 5002394 ~ 5002721 (+)
G133014 NA non-coding downstream 89255 5772063 ~ 5799356 (+)
G133060 NA non-coding downstream 151007 5833815 ~ 5834041 (+)
G133066 NA non-coding downstream 161456 5844264 ~ 5845059 (+)
G133074 NA non-coding downstream 169066 5851874 ~ 5852725 (+)
G133077 NA non-coding downstream 171680 5854488 ~ 5854709 (+)
AMCG00011806 NA other upstream 561975 5115090 ~ 5120098 (+)
AMCG00011771 NA other upstream 1704411 3903675 ~ 3977662 (+)
AMCG00011770 NA other upstream 1784477 3892381 ~ 3897596 (+)
G132271 NA other upstream 2477476 3201374 ~ 3204597 (+)
AMCG00011735 NA other upstream 2580936 3078417 ~ 3101137 (+)
AMCG00011830 vmhcl,LOC107560354 other downstream 77050 5759858 ~ 5761248 (+)
G133059 NA other downstream 145993 5828801 ~ 5829532 (+)
AMCG00011837 NA other downstream 204109 5886917 ~ 5888884 (+)
AMCG00011853 zfhx2,LOC108245441 other downstream 210716 5893524 ~ 5907174 (+)
AMCG00011873 NA other downstream 402044 6084852 ~ 6102011 (+)

Expression


Co-expression Network