AMCG00015379 (ppp1r14b,LOC108268202)


Basic Information

Item Value
gene id AMCG00015379
gene name ppp1r14b,LOC108268202
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 8613256 ~ 8623716 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00015379
AACatcacgagagagagagagagagagagagagagagagaagagagagagagagagagagagagaggaaggactGAGTCGGCGACTAACAtacaaagagacagaaagagagagagaggggggaggagagagagaaggagaaaagacGAAGAAAGCGCACCGGGAGACGCTCAAGACATCACAGGCTTTTCACCGAGAGCGATGGACGGGCTGTAACGAGACCCATCCGAGCAGAAGCGCGCCCGGGGGCAGCGAGGTGACCGTGCCGGGGAAGGGCTGTCCACCTCAGGGCCGACTGTCCGTCCGTCCGCACCGCACCGGCAAACGGAATAGAAACGAAATCAAACCGGATCTGGGAAAGAGACACCACAGCTCTCAACTGTGCTGGGGGGTTTGATTGGTGACCCGAGGAACAGCGgacagaaaagagagagagagagagagagagagagagagagagagaggaggggaggggagatcTTCGACTTCTTTGTGTATATGTGGCAgccttaaaataaactttttccgttattttgtatatatagaaatacatatgTAGGGTGCATAGccatatacatttctttaatagAATTCTAAAACGTGGCCTTTACCCGGGTCCGAGAATTCGGGTGCAATTGGGAGTATTTTTGTTCTCCCAATTTCTTTTCTAGCATAATTGACTATTATACTTATCAGCCTTTGTAATTTTTTGATATCTTTATATACTTCTACACCAAGAGCGCTTTTTGTATTTTCGGAGCCTGCATTCCCCAGAGCGGATTTATTCAGAGGCGCCGGGGGACCCAACACCGACCATGGCCGCGGTGACCAGCCCGGAATCGAGCCCCCAGCCCCGGGTGTATTTCCAGACGCCGCCCGGCACCGCGGAGACGGAGATCCCGGTTCGCAAGCAGGGTAGGGTGACGGTGAAGTACGACCGCAAGGAGCTGCGGAAGAGGCTCAATCTGGAGGAGTGGATCATCGACCAGCTGACGGATCTGTACGACTGCGAGgAGGAGGCGATTCCCGAGCTGGAGATCGATGTGGATGAGCTGCTGGACCTGCCCAGCGAGGACGACCGGGCAGCCAGGGTCAAGgaTCTGCTGGTCGATTGCTACAAGCCCACTGATGACTTTGTGACAGAGTTGCTGGACAAGATTCGGGGGATGCAGAAGCTCAGCACGCCGCAGAAGaagtgacccctgacccctccCCACCCGGACACCACACAGCAGGGATACAGACACGCGCACACTGACAAAGACGGAGACGTATACAGGGGCAGGGTCACCAAGGTGCACAtgcagagatacacacacacacacacacacacacacacacaatagggAGCGACTGACAGACAGCCACAAGTGCGTAACTATAAAGCCGCAATGGGGCTCTGAACCTAAAGGCTGatgtaataaaaaacactgtcacgaacaaaacaaaaaccccatTGGATGGTGGGGGCTGGTGCTACCAAGGCAGCGCTGTCTGGTGGGGGTGCTACCTAGGTTGCAGTcccaggggggtgggggcagcGCTCAGGCCTTTAGCTAATTACACcctgtacacacaaacacacagatctgTGTGACAGTGCAAGTCTGGGAGGGGTGTGGGTTGTGATGTTCTTCCAGGTCTGTTTTCTAggatttttattgttatatgtGATTGATCTACTACAAGTTCCTGACTTCAATTCAGCCGTGTGCAGTtagattttgtttataaaataaaaaaataaaaataaaaatacaaaaatctgtttttcatgcGAGTTTCAGCCACTGGTACCAAACTCCGCGCTGTTGAGTGTCAGATTTAGGCTGGGAAGAGTGCGATTAATTACTCGTCACTTTTGTCCGGTCGGGCTTGCCGTACCtctttatgtgtgttttttggagGGCCCGCGTTGCTCCCCGTGTTGTGCCGCTGCTGTGCGGGGGGCTCTCCGTCCCGGCCGGGTGATTAAAGTGTCACCGCGTCACGACTCGCACAACAACGCGACAGGACACGGGAAAAACAACACGCGAATTAGTCTGGAAATGTTTCCCCATTTATCCATGGCGCACTTGTGATAGATAGGGGTTATATAGGCGTCGCGTTTTTGTTGCGCAGATTTTCGCAGTTCTGCACAATCTctccgatcccattggcggagcagcgcagacccgcgcagaactgcgggcaTCTGCGCAGGATGAACGCGACCCAGGATTCTCTGCTCTGTCCCCCCTCTGGCCTCTACGGCAAGCCCCTCGGGACAAAACGCATGGGATTTATCAGCACGACCCCGCGGCTGTCCTTCAGTCCCAAACGCTTAAATGTGTCACCGAAAAGCGCCTGGAACTcgcatgatttttttttagtaaagaCACAATTTGTATTACCTTTCATAAAGAAACTGACTgggatatgattttttttacttttgctgTTGCTTTATGTAGGATTTGTATTGTTGTGCGACAGTTTGGAAGCGAGAGACGTCGTTGCCTTTTATTTCTCCTTatgcaaaccaaaaaacaaacaaaagcaaataaaccAGAAcgagcaaacaaaaaacacgagatgtgaaaacagaaaaaaaagtgtcattATTGtgtataggttttgttttcttttgttttttgttttaattataacagtttaattttaaatggataGGACGCGAAACTTACTTGctccaaaataatgtattcatatgaaTGAGTGATGGCTAAGACCACACAGTTTTAGCccctaatttaaaaatattaaaattattatttgccTCTTGGGATTTCATGTTCCTCTGTTGGAGACCCCAGAATCTTTCACtgtaatcaaaatcaaatctggGTCAGTGTATTGGGTCTGAATGGGGCCTAATCTGGGTCTGATTGGGGTTGTGATGTCATGAGGTCTGTCCTCTACCTAGCAGCCTGAGCTGTAAGACCCCCCTGCCCGATAGCAAAGCCGCTCAAGGCGGTGGGTCCGGCTCAGGGCTCTGGCCGGACTGGACAGGATGGGCTCAGTTGTtgtttcatctctctctctcgaccaGGAGCACAACAAAATTCTTACtgtaaaagtattattatttttcaactgAATTATTTTCCACTGAGGATTTTTGTGAAACAGCCTCAAAGAGAAGACTCTCCAAATAATGCTGGAACTGACTGACTTTATGGAcattaggaaaaaaacacacactgattttGCACAGTGTGTCGTTCCTGGCTGTGTGTGGTGGACTTATTGTTGTTGTCtagttatctttttatttttttacgaACACACTTGAGTGCCGCGAGCTGTTGggataacattttgaaaaccttgGGAAGCAAATATAGGAATGGCTTCAGAGTttcatcgtttttttttttacaggatcCATTTTGAATTTCGTGTgcggttttaatttaatattacctgtatttattgttttaaagaattaCACTGTGTATTGAGGCAGTTAAAGTTATTACAAGTTAACAGTAGAACATCTACAGTGCATGAAAACAGTCAGTTTATTCTCAGCCTTCATCTGAAACAATGTGATTACGGTCATGGCTTCAGGAAACCATCTAGTAAGAGCCAAGGAAAATACATTAgacatgttttgtattgttctgcTTCAGGTATTTTTGCCTTTTTGGGGGCTGGTTAAACAGAACAGTTAGAACATGcgtggaataataataatggtaaatgTTACAGgtggttttaatgtattttgttttttttggaattgcagcttttttatttgtcaCGGATTTGGGATTTTTTCGGGAATGCGACGAGATCTAAAGAGAGACACTATACGGCAGACTGTTCCTCTGCCTCTTTCCAAGCAGAGCTTAGAAAaatcactaaaaaaaaaacaaaacaaaaaaaaaaaaacattgacggACAGTATCTGGCAAGTGATGGCGGTCTACCCAGTGTCAACACTGCTGGATGGAGACTGACACTTTTTGGCAAGAGGAGGGGAGAGTTGGGGGAGGGaaggagatggggagagaggggtcTGATTGCCATAGGAACTGTaaccccccccatccctcctcTTCTCTTAATGCCAAATTTTGCAGGACACTGggtcataaaaaataaaataaagaaccaGGTATACTTAGCAATACTTTTCCCCCTGTTTGTTACACTTTTATGATACAATGTTTAATAAAGCAGCTGAACTTGA

Function

symbol description
ppp1r14b Predicted to enable protein serine/threonine phosphatase inhibitor activity. Predicted to be involved in innate immune response. Predicted to be located in cytoplasm.

NR:

description
PREDICTED: protein phosphatase 1 regulatory subunit 14B

GO:

id name namespace
GO:0042325 regulation of phosphorylation biological_process
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K17555 PPP1R14B; protein phosphatase 1 regulatory subunit 14B

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00015379 True 4194 mRNA 0.46 5 8613256 8623716

Neighbor

gene id symbol gene type direction distance location
AMCG00015380 NA coding downstream 4948 8601327 ~ 8608308 (-)
AMCG00015375 NA coding downstream 77856 8534379 ~ 8535400 (-)
AMCG00015371 NA coding downstream 84574 8526032 ~ 8528682 (-)
AMCG00015373 NA coding downstream 118396 8486551 ~ 8494860 (-)
AMCG00015367 calm1,LOC102293206,LOC102778633,LOC107396020 coding downstream 131894 8479116 ~ 8481362 (-)
AMCG00015387 LOC108267603,LOC106603153,LOC107583282,LOC107721660 coding upstream 44488 8668204 ~ 8671343 (-)
AMCG00015385 LOC108428058,LOC107568312,LOC107715375,LOC107669368 coding upstream 62051 8685767 ~ 8687647 (-)
AMCG00015386 NA coding upstream 109619 8733335 ~ 8734447 (-)
AMCG00015388 ppp2r5b,LOC107588189,LOC107749805 coding upstream 136149 8759865 ~ 8777414 (-)
AMCG00015384 NA coding upstream 158944 8782660 ~ 8784858 (-)
G97561 NA non-coding downstream 1860 8610947 ~ 8611396 (-)
G97536 NA non-coding downstream 14957 8596735 ~ 8598299 (-)
G97475 NA non-coding downstream 179940 8431923 ~ 8433316 (-)
G97409 gng3,LOC107559409 non-coding downstream 486792 8124268 ~ 8126464 (-)
G97395 NA non-coding downstream 544219 8068780 ~ 8069037 (-)
G97574 NA non-coding upstream 31457 8655173 ~ 8656821 (-)
G97575 NA non-coding upstream 40359 8664075 ~ 8668051 (-)
G97589 NA non-coding upstream 95530 8719246 ~ 8719559 (-)
G97801 NA non-coding upstream 157021 8780737 ~ 8782633 (-)
G97805 NA non-coding upstream 444227 9067943 ~ 9072138 (-)
AMCG00015372 lrfn4,LOC101077706,LOC106517947,LOC102210474,LOC101487083,LOC102311587 other downstream 30570 8579500 ~ 8582686 (-)
AMCG00015374 NA other downstream 67461 8541188 ~ 8545795 (-)
G97455 mark2a,LOC107715377 other downstream 201374 8409987 ~ 8411882 (-)
AMCG00015361 NA other downstream 243225 8361614 ~ 8370031 (-)
AMCG00015348 ehd1b,LOC107718765,LOC107720605,LOC106603140,LOC107548869,LOC106930329,LOC103471421,LOC103136898 other downstream 329627 8223199 ~ 8283629 (-)
AMCG00015393 zgc:77262,LOC107715378,LOC107669316,LOC107568302,LOC108428054,LOC107567914,LOC108278748,LOC107700012 other upstream 165944 8789660 ~ 8794774 (-)
AMCG00015394 NA other upstream 205586 8829302 ~ 8838979 (-)
AMCG00015400 NA other upstream 330797 8954513 ~ 8960144 (-)
AMCG00015409 NA other upstream 414880 9038596 ~ 9040141 (-)
AMCG00015415 NA other upstream 528502 9152218 ~ 9156447 (-)

Expression


Co-expression Network