AMCG00015385 (LOC108428058,LOC107568312,LOC107715375,LOC107669368)


Basic Information

Item Value
gene id AMCG00015385
gene name LOC108428058,LOC107568312,LOC107715375,LOC107669368
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 8685767 ~ 8687647 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00015385
ATGTCACGTCCCTCTTCCAAGACGCACTGCCCCCGGCTGCTCCTATTGGCCCCTGCCATGCTGGTCCTGGCCCTGACTCCGGTGTGCGGCGCCGGCGAGATCCAGGCACCGGTCGGCGGGGGGAGGGGCAACTGCTCGAGGGCGGCGTCGGGCTGCTCGGACGGGGTGGTGCTGCCCGTGTGGAACCCCCAGGACCCATCAGTAGGGGACAAGGTGGCGCGGGCCATTGTGTACTTCGTGGCACTCATCTACATGTTCCTGGGGATGTCCATCATCGCTGACCGGTTCATGTCCTCCATCGAGGTCATCACCTCGCAGGAGAAGGAGATCACGGTCAAGAAGCCCAATGGCgagaccaccaccaccaccgtgCGCATCTGGAACGAGACGGTCTCCAACCTCACCCTCATGGCGCTGGGCTCCTCTGCCCCCGAGATCCTGCTGTCTGTGATCGAGGTGTGCGGGCACCAGTTTGAGGCCGGCGACCTGGGGCCCTCCACCATCGTGGGCAGCGCCGCCTTCAACATGTTCGTCATCATCGCCATCTGCGTCTACGTGGTGCCTGACGGCGAGACACGCAAGATCAAACACCTGCGTGTGTTCTTTGTCACAGCCGCCTGGAGCATCTTCGCCTACGTGTGGCTCTACATCATCCTATCCGTGTCCTCCCCAGGCGTGGTGGAGGTGTGGGAGGCGGTGCtcaccttcttcttcttccccctATGCGTGCTGCAGGCCTGGGTGGCCGACCGGCGCCTGCTCTTCTACAAGTACGTGCGCAAGCGTTACCGGGTGGACAAGCATCGTGGCATCATCGTGGAGACAGAAGGCGGGGACGGGCCCTTCGCCAAGTTGGATATCGAGATGGACGGCCAGCCAGCGCTCAACTCACACAAGGAGGCGCTGGACGGGATGCTGTGTGGCGGGGGTGAGGACGGGGTGGGAGGAGGCGGCGGCGGGAGGGACCAGGAAGACGAGGCGCGGCGGGACATGGCACGCACGCTGAAGGAGTTGAAGCAGAAGCACCCGGACAAGGATATGGAGCAGCTGATCGAGATGGCCAACTACCAGGTGCTGATCCAGCAACAGAAGAGCCGGGCCTTCTACCGCATCCAGGCCACCCGCATGATGATCGGTGCTGGCAACATCTTAAAGAAGCACGCGGCCGACCAGGCACGCAAGGTGGTGAGCTGCCACGAGCCACGGGCAGAGGAGGAGGACCCGAGCACCATCCGCGTGGCCTTTGAGCCCTCCCACTACCAATGCTTTGAGAACTGCGGTTCACTCACCCTGGCCGTGGGCCGGCGGGGGGGTGAACTGGAATGCACGGTCAAGGTGGACTACCGCACGGAGGATGGCACAGCCAACGCGGGCTCCGACTACGAGTTCGCTGAGGGCACACTGGTCTTCAAGCCGGGCGAGACGCTGAAGGAGATCACCGTGGGCATCATTGATGACGACATCTTCGAGGAGGACGAGCACTTCTATGTCCACCTCAGCAATGTCCGTGTGGTCTGGCCAGAGCCGGGAGGGGGAGATTCGGGGGCCCCCCCCCTCACCTCTGCCACTTCTAACGTCGCGTCCACCCCCTCCCTGCTCCTGGCCACCACCCCGCCCCCGCCCAAGGCTGTGCTGGGTGCTGCCCACACCGCCACCGTCACCATCTTCGATGACGACCATGCTGGCATTTTCACCTTCGAGAGCGAGAGCACGCGGGTGAGCGAGAGCGTGGGCGTTATGCGAGTCAAGGTGCAGCGCACCTCGGGTGCCCGGGGCACCGTGGCGCTGCCCTATCGCACAGTGGAGGGCACAGCCAAGGGCGGAGAGGACTACGAGGAGGTGGCGGGCAAGCTGGAGTTCCTCAACGACGAAACCATGTGA

Function

NR:

description
PREDICTED: sodium/calcium exchanger 1-like

GO:

id name namespace
GO:0051480 regulation of cytosolic calcium ion concentration biological_process
GO:0070588 calcium ion transmembrane transport biological_process
GO:0035725 sodium ion transmembrane transport biological_process
GO:0001947 heart looping biological_process
GO:0007154 cell communication biological_process
GO:0042044 fluid transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005432 calcium molecular_function

KEGG:

id description
K05849 SLC8A, NCX; solute carrier family 8 (sodium/calcium exchanger)

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00015385 True 1881 mRNA 0.64 1 8685767 8687647

Neighbor

gene id symbol gene type direction distance location
AMCG00015387 LOC108267603,LOC106603153,LOC107583282,LOC107721660 coding downstream 14424 8668204 ~ 8671343 (-)
AMCG00015379 ppp1r14b,LOC108268202 coding downstream 62051 8613256 ~ 8623716 (-)
AMCG00015380 NA coding downstream 77459 8601327 ~ 8608308 (-)
AMCG00015375 NA coding downstream 150367 8534379 ~ 8535400 (-)
AMCG00015371 NA coding downstream 157085 8526032 ~ 8528682 (-)
AMCG00015386 NA coding upstream 45688 8733335 ~ 8734447 (-)
AMCG00015388 ppp2r5b,LOC107588189,LOC107749805 coding upstream 72218 8759865 ~ 8777414 (-)
AMCG00015384 NA coding upstream 95013 8782660 ~ 8784858 (-)
AMCG00015403 NA coding upstream 205208 8892855 ~ 8896268 (-)
AMCG00015401 NA coding upstream 241498 8929145 ~ 8933379 (-)
G97575 NA non-coding downstream 17716 8664075 ~ 8668051 (-)
G97574 NA non-coding downstream 28946 8655173 ~ 8656821 (-)
G97562 NA non-coding downstream 51107 8612495 ~ 8634660 (-)
G97561 NA non-coding downstream 74371 8610947 ~ 8611396 (-)
G97536 NA non-coding downstream 87468 8596735 ~ 8598299 (-)
G97589 NA non-coding upstream 31599 8719246 ~ 8719559 (-)
G97801 NA non-coding upstream 93090 8780737 ~ 8782633 (-)
G97805 NA non-coding upstream 380296 9067943 ~ 9072138 (-)
G97860 NA non-coding upstream 406508 9094155 ~ 9110050 (-)
G97861 NA non-coding upstream 426369 9114016 ~ 9529153 (-)
AMCG00015372 lrfn4,LOC101077706,LOC106517947,LOC102210474,LOC101487083,LOC102311587 other downstream 103081 8579500 ~ 8582686 (-)
AMCG00015374 NA other downstream 139972 8541188 ~ 8545795 (-)
G97455 mark2a,LOC107715377 other downstream 273885 8409987 ~ 8411882 (-)
AMCG00015361 NA other downstream 315736 8361614 ~ 8370031 (-)
AMCG00015348 ehd1b,LOC107718765,LOC107720605,LOC106603140,LOC107548869,LOC106930329,LOC103471421,LOC103136898 other downstream 402138 8223199 ~ 8283629 (-)
AMCG00015393 zgc:77262,LOC107715378,LOC107669316,LOC107568302,LOC108428054,LOC107567914,LOC108278748,LOC107700012 other upstream 102013 8789660 ~ 8794774 (-)
AMCG00015394 NA other upstream 141655 8829302 ~ 8838979 (-)
AMCG00015400 NA other upstream 266866 8954513 ~ 8960144 (-)
AMCG00015409 NA other upstream 350949 9038596 ~ 9040141 (-)
AMCG00015415 NA other upstream 464571 9152218 ~ 9156447 (-)

Expression


Co-expression Network