AMCG00015402 (tm7sf2,LOC107548864,LOC107720613,LOC107693941,LOC107701161,LOC107555157)


Basic Information

Item Value
gene id AMCG00015402
gene name tm7sf2,LOC107548864,LOC107720613,LOC107693941,LOC107701161,LOC107555157
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 8977099 ~ 8982886 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00015402
GCGCCCCGAGGCGTGCAGAGACCCTCCCACGTCGAGCTCTGATTGGCCAGCTCCGCGGTCGCTGCGCACGGATTGGTTCGGCGCCTCCCGTTCCACCGTCTTCTGATGACAGGCGTCTGCGCCGATTGGTGGAAACCGGGCAGTGAGTTCTGGGCACAGTCGCAGTGCGCAGGCGCCCGTGTCAGCTGTGGGTAGCCACTAGTACTCGTTGTGCTGCGTTTAAAGAGACAGACTGCGAGGATCAGGATGGCGGTGGACAAACACAGAGCGCCACGGACCACAGAGAAGGAGTTTGGAGGAACactggGTGCGGTGTGTCTGCCCGTTCTCCTGCCAGTCACAGTGCTGTACCTGCTGTCAGTGTGCTGCTCCCCCTCTGCCAGCCTGCTGCAGTGGCCCCCACCCCTGCCTTCCCCCGCACAGCTGTGGCAGCCCAAGGCCCTAGCCATCGTGTTGGGCTGGCTGGGCCTACAGGGGGTGCTGTACCTGCTGCCCGTGGGCAAGGGGGGCTGGCCTTCATCCTCAGCCTCCTTCTCTACCTCAAGTCCCTAGTTGCTCCCCCTCATGCCCTTGCCCCTGGGGGCAACACAGGTAACCCCCTGTATGATTTCTTCATGGGACGGGAGCTAAACCCACGCATCGGGACCTTTGACCTCAAGTACTTCTGTGAGCTGAGGCCCGGTCTGATTGGCTGGGTGGTGATTAACATGGGAATGTTAATGAAAGAGGTGGAGCTGCGGGGGAGCCCCTCCCTCTCCATGCTTCTGGTCAATGGATTCCAGCTGCTGTATGTCACTGATGCACTGTGGAacgagGAGGCGGTGCTGACCACGATGGACATTGCCCACGATGGCTTCGGCTTCATGCTGGCGTTTGGGGACCTGGCCTGGGTGCCCTTCACCTACAGCCTGCAGGCCCACTTCCTACTGCTTCACCCGCACTCACTGAGCACGCTCACTGCGGCCGCCATCACTGCGCTCAACGcGCTGGGTTACTTTATCTTCCGTCAGTCAAACTCCCAGAAGAATCGTTTCCGCAGAGACCCCACAGACCCCCGAGTGTCCGGCCTGGAGACCATCGCCACAGCAACAGGGAAGCGGCTGCTGGTGTCAGGCTGGTGGGGCTTCGTCAGGCATCCCAACTACCTGGGCGACCTGCTGATGGCACTGGCCTGGTCACTGCCCTGTGgcCTATCCCACCCCCTGCCCTATTTCTATGTGGTGTATTTCTGCACCCTGTTGGTGCACCGGGAGGCACGAGACGAGCGCCAGTGCCAGGGCAAGTATGGCCTGGCCTGGGGTACCTACTGCCAGCGCGTACCCTACCGCATCCTGCCCTACCTGTATTGACCTATGGTGTGTCAACGGGGGGCCAACGATTGACTAGACCGCTTCCCCTCCTTGGAAGGAGTCAATACTGGCCCACCAAGCACTTTCTGGTCTACCTGTCCTGATCAACGTAGGGCCAACATTGGCTCATCCTCCCTGACCAACATTGTGCCAACGCTGGTCCAACGCTTCGGGGCTGACACTGGACCTGAGATGTGAAGTGAGATGTGCTTACAGAGACGGCAGGGGCGTGTCATTTGTAAAACAGAGACAACACTGAAAACCACAGACAAAAGACAGAGAATGAGAAACCAGTCCATCAGATCAGCTGCTGTCATTGAAAttcttttattgtttcattttgacCCCCAGGATCCCCTCCACTGGGCCCCAATTGCCAATCACATCAGAGACAGTGTTCACAAAAAACCTTCCCATCCCCCAACCTCAGTCTCTGAAGGGGTCCCTGCCTGCATCAAGTAACACCATTAACTTATAATcagttgttttgattttgacagCCCAAACTCCCccaaaaaactgaataataaaaaatatatataaaca

Function

symbol description
tm7sf2 Predicted to enable oxidoreductase activity, acting on the CH-CH group of donors. Predicted to be involved in sterol biosynthetic process. Predicted to act upstream of or within cholesterol biosynthetic process. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in nuclear inner membrane. Predicted to be integral component of endoplasmic reticulum membrane. Is expressed in central nervous system; gut; and liver. Orthologous to human TM7SF2 (transmembrane 7 superfamily member 2).

NR:

description
PREDICTED: delta(14)-sterol reductase-like

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016020 membrane cellular_component
GO:0016628 oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor molecular_function

KEGG:

id description
K00222 TM7SF2, ERG24; Delta14-sterol reductase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00015402 True 1895 mRNA 0.57 10 8977099 8982886

Neighbor

gene id symbol gene type direction distance location
AMCG00015405 NA coding downstream 2590 8969459 ~ 8974509 (-)
AMCG00015404 cnih2,LOC106922620 coding downstream 37184 8938912 ~ 8939915 (-)
AMCG00015401 NA coding downstream 43720 8929145 ~ 8933379 (-)
AMCG00015403 NA coding downstream 80831 8892855 ~ 8896268 (-)
AMCG00015384 NA coding downstream 192241 8782660 ~ 8784858 (-)
AMCG00015410 vps51 coding upstream 693 8983579 ~ 8990241 (-)
AMCG00015411 frmd8,LOC106563469 coding upstream 41758 9024644 ~ 9029070 (-)
AMCG00015408 NA coding upstream 67115 9050001 ~ 9054092 (-)
AMCG00015420 NA coding upstream 203388 9186274 ~ 9201237 (-)
AMCG00015421 sf3b2,LOC106608993 coding upstream 235514 9218400 ~ 9230633 (-)
G97801 NA non-coding downstream 194466 8780737 ~ 8782633 (-)
G97589 NA non-coding downstream 257540 8719246 ~ 8719559 (-)
G97575 NA non-coding downstream 309048 8664075 ~ 8668051 (-)
G97574 NA non-coding downstream 320278 8655173 ~ 8656821 (-)
G97562 NA non-coding downstream 342439 8612495 ~ 8634660 (-)
G97805 NA non-coding upstream 85057 9067943 ~ 9072138 (-)
G97860 NA non-coding upstream 111269 9094155 ~ 9110050 (-)
G97861 NA non-coding upstream 131130 9114016 ~ 9529153 (-)
G97906 NA non-coding upstream 400622 9383508 ~ 9384124 (-)
G98006 NA non-coding upstream 698279 9681165 ~ 9681682 (-)
AMCG00015400 NA other downstream 16955 8954513 ~ 8960144 (-)
AMCG00015394 NA other downstream 138120 8829302 ~ 8838979 (-)
AMCG00015393 zgc:77262,LOC107715378,LOC107669316,LOC107568302,LOC108428054,LOC107567914,LOC108278748,LOC107700012 other downstream 182325 8789660 ~ 8794774 (-)
AMCG00015372 lrfn4,LOC101077706,LOC106517947,LOC102210474,LOC101487083,LOC102311587 other downstream 394413 8579500 ~ 8582686 (-)
AMCG00015374 NA other downstream 431304 8541188 ~ 8545795 (-)
AMCG00015409 NA other upstream 55710 9038596 ~ 9040141 (-)
AMCG00015415 NA other upstream 169332 9152218 ~ 9156447 (-)
AMCG00015419 klc2,LOC107747958,LOC107728029,LOC106578016 other upstream 191957 9174843 ~ 9184406 (-)
G97897 NA other upstream 370331 9353217 ~ 9355732 (-)
AMCG00015460 NA other upstream 825932 9808818 ~ 9815466 (-)

Expression


Co-expression Network