AMCG00015409


Basic Information

Item Value
gene id AMCG00015409
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 9038596 ~ 9040141 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00015409
ATGGCCCCAGTTGACCTGGTGAAAGTGCGGCTACAGAACCAGACGGAGGGGTGTCGGGGGGAGGGCCGCTATCGGGGGCCGGTGCACTGTGTGGCTTCCATCCTGCGGCAGGAGGGGCCACGGGGGCTGTTCCGGGGGATGGGGGCGCTGGCCTTGAGAGACGTGCCTTGCTACGGGCTCTACTTCCTGCCCTACGAGGTCATATGCACCGCCCTGACTAAGCCTGGGCAAGAGACAGGGCCACTTGCGGTGGCGTTTGCTGGGGGCACAGCAGGAGTGGTGACATGGGGCTGTGCCACACCCATGGACGTGGTGAAGGCACGGCTGCAGATGGACGGGCAGGGGGGGCGGCAGTACCGGGGTGTGCTGCACTGCGTGGTGGCCAGCGTGCGAGCGGAGGGCGTGGCCGTGTTGTTCCGGGGGCTCCTGCTCAACAGCCTGCGTGCCTTCCCTGTCAACGCCATCACATTCCTCAGCTACGAGAGCCTGCTCCGGGCCATGACATCAGCACACTGAGCCCGCTCCCAGCCCTGACCTCACTACCTCCCAGCCCATTGTTCTCCCGGCATCAAACATGCTTCTGGCCCTGATGTCATCGACTTAGGGAGCACTCTGATCTCTGACTTCATCAAACACAGACAGTTTTGAGCCCTGACATCATCAAAGATGCCAGCTCTGAGCCCTGACATCATCAAACACAGCCAGCTCTGAGCCCTGACTTTGGCGGTGTTCTCGTTGGGCAGCCATTTTGAGAGCCTGTTTAGACTCTGTGTCAAATGACATGGGTCTGCACTCATACTCGGTCTCAGTATGGCAAATGGCTTCACCGCAGCCGGACCTGAGAACAGAGGTCTGCTATGAAAAGTTGCTGTGCTGCAACAGACCACCAATTGAGCAGTGGAGCAGATCTGTTGTCATAACAATGGTTACATTCGTGAAGCgtagatttccacagttctgcacagaaattCACAGATGTGTGTTCGTCAAGGGCTGCTGCGTGACATCACTAAGCCCCACCTGCAGAATGCCCACTCGTCAGCAGAGGTGAACATCAACTTATTATCACACAATGAAGCCATGAACAGCATTGTCAGcaccatagatatagaattctagatcgacaCTTTAGCAGTGTcaatactttattaaataattacatcaattattgtAACAAACATACTGTAAAACTATGATGCATAATAAAGCTGtaacttaaatgattggc
>TU122010
ctttctcatgggttacttcatctagttctattcctagCAATTATATTGGAcatgtttgttacctgcatgttttacttgtatgtaatacatgtacacacaatCTCACTCTCCCCGTCCCAGGTGGTGGTGATGGCCCCAGTTGACCTGGTGAAAGTGCGGCTACAGAACCAGACGGAGGGACGTGCCTTGCTACGGGCTCTACTTCCTGCCCTACGAGGTCATATGCACCGCCCTGACTAAGCCTGGGCAAGAGACAGGGCCACTTGCGGTGGCGTTTGCTGGGGGCACAGCAGGAGTGGTGACATGGGGCTGTGCCACACCCATGGACGTGGTGAAGGCACGGCTGCAGATGGACGGGCAGGGGGGGCGGCAGTACCGGGGTGTGCTGCACTGCGTGGTGGCCAGCGTGCGAGCGGAGGGCGTGGCCGTGTTGTTCCGGGGGCTCCTGCTCAACAGCCTGCGTGCCTTCCCTGTCAACGCCATCACATTCCTCAGCTACGAGAGCCTGCTCCGGGCCATGACATCAGCACACTGAGCCCGCTCCCAGCCCTGACCTCACTACCTCCCAGCCCATTGTTCTCCCGGCATCAAACATGCTTCTGGCCCTGATGTCATCGACTTAGGGAGCACTCTGATCTCTGACTTCATCAAACACAGACAGTTTTGAGCCCTGACATCATCAAAGATGCCAGCTCTGAGCCCTGACATCATCAAACACAGCCAGCTCTGAGCCCTGACTTTGGCGGTGTTCTCGTTGGGCAGCCATTTTGAGAGCCTGTTTAGACTCTGTGTCAAATGACATGGGTCTGCACTCATACTCGGTCTCAGTATGGCAAATGGCTTCACCGCAGCCGGACCTGAGAACAGAGGTCTGCTATGAAAAGTTGCTGTGCTGCAACAGACCACCAATTGAGCAGTGGAGCAGATCTGTTGTCATAACAATGGTTACATTCGTGAAGCgtagatttccacagttctgcacagaaattCACAGATGTGTGTTCGTCAAGGGCTGCTGCGTGACATCACTAAGCCCCACCTGCAGAATGCCCACTCGTCAGCAGAGGTGAACATCAACTTATTATCACACAATGAAGCCATGAACAGCATTGTCAGcaccatagatatagaattctagatcgacaCTTTAGCAGTGTcaatactttattaaataattacatcaattattgtAACAAACATACTGTAAAACTATGATGCATAATAAAGCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00015409 False 1228 mRNA 0.55 2 9038596 9040012
TU122010 True 1229 TUCP 0.52 3 9038614 9040141

Neighbor

gene id symbol gene type direction distance location
AMCG00015411 frmd8,LOC106563469 coding downstream 9526 9024644 ~ 9029070 (-)
AMCG00015410 vps51 coding downstream 48355 8983579 ~ 8990241 (-)
AMCG00015402 tm7sf2,LOC107548864,LOC107720613,LOC107693941,LOC107701161,LOC107555157 coding downstream 55710 8977099 ~ 8982886 (-)
AMCG00015405 NA coding downstream 64087 8969459 ~ 8974509 (-)
AMCG00015404 cnih2,LOC106922620 coding downstream 98681 8938912 ~ 8939915 (-)
AMCG00015408 NA coding upstream 9860 9050001 ~ 9054092 (-)
AMCG00015420 NA coding upstream 146133 9186274 ~ 9201237 (-)
AMCG00015421 sf3b2,LOC106608993 coding upstream 178259 9218400 ~ 9230633 (-)
AMCG00015418 NA coding upstream 191172 9231313 ~ 9234491 (-)
AMCG00015422 mta2,LOC106577523,LOC106608586 coding upstream 197322 9237463 ~ 9251604 (-)
G97801 NA non-coding downstream 255963 8780737 ~ 8782633 (-)
G97589 NA non-coding downstream 319037 8719246 ~ 8719559 (-)
G97575 NA non-coding downstream 370545 8664075 ~ 8668051 (-)
G97574 NA non-coding downstream 381775 8655173 ~ 8656821 (-)
G97562 NA non-coding downstream 403936 8612495 ~ 8634660 (-)
G97805 NA non-coding upstream 27802 9067943 ~ 9072138 (-)
G97860 NA non-coding upstream 54014 9094155 ~ 9110050 (-)
G97861 NA non-coding upstream 73875 9114016 ~ 9529153 (-)
G97906 NA non-coding upstream 343367 9383508 ~ 9384124 (-)
G98006 NA non-coding upstream 641024 9681165 ~ 9681682 (-)
AMCG00015400 NA other downstream 78452 8954513 ~ 8960144 (-)
AMCG00015394 NA other downstream 199617 8829302 ~ 8838979 (-)
AMCG00015393 zgc:77262,LOC107715378,LOC107669316,LOC107568302,LOC108428054,LOC107567914,LOC108278748,LOC107700012 other downstream 243822 8789660 ~ 8794774 (-)
AMCG00015372 lrfn4,LOC101077706,LOC106517947,LOC102210474,LOC101487083,LOC102311587 other downstream 455910 8579500 ~ 8582686 (-)
AMCG00015374 NA other downstream 492801 8541188 ~ 8545795 (-)
AMCG00015415 NA other upstream 112077 9152218 ~ 9156447 (-)
AMCG00015419 klc2,LOC107747958,LOC107728029,LOC106578016 other upstream 134702 9174843 ~ 9184406 (-)
G97897 NA other upstream 313076 9353217 ~ 9355732 (-)
AMCG00015460 NA other upstream 768677 9808818 ~ 9815466 (-)
G98094 NA other upstream 797361 9837502 ~ 9839510 (-)

Expression


Co-expression Network