AMCG00015702


Basic Information

Item Value
gene id AMCG00015702
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 17006122 ~ 17018382 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00015702
GTGCTGGCGACAGGGCTGAGTGGCTTGTACTCTTCCCTGCCCATGAAACTGGAAGTCCACAGTGAGGAATGGCACTGTCTGCACAGAGATGACTGGATGCAGGTCCCTTCACTGGTGCAGTTTCTGAACTCACTTGAGTTCTGCAATGCTGTCATACAGGTGGCACATCCCACTATCCGAAACCAGCTTGTCAACTATATTTACAATGGCTTCCTCGTTCCTGTAGTGGCACCAGCTCTGCACAAGCTGACACTAGAAGAGGTGATGACCACCACAGCCTATCTGGACCTGTTCCTGCGCAGCATCACTGAGCCGGCATTGCTCCAGACTTTCCTCAGCTTTATCCTACTGCACAAACATGAGAATGTACACATCTTGGACACGCTCGTCAGCCGCATCAATACCCCTTTCCAGCTCGGCACTGTGTCTCTTGCATTGTTCAGGACTTTGATCGGTTTATACTGTGAGGATGTGATGTTACAGCTGATCTTGAGGTACCTGATCCCCTGTACTCACATGATGCTGAGCCAGCGCAGGGtggtgagggagagggattgCTACTCTGCATCTGCTGCAAAGATCCTGGCTCTTACTCCCTCCTGCTGCTCCCCAGAGATCAGCCTGCTGCCCCGGAAGCAACAGCTAGACTCCATCCTTTGGTCAAAGGGCATGGACATGTCACACACTGGCACCAAGGATTCAGAAAATCTATTTTCAAACTCTGAATGTCAAGGCTTTGCTTACATTATGGGTTCTGAGACAGTCATGGATGTCAGTTACTTGCACTACCTATATGATGCCCGCAGTGGCATCATGAACTGCATCAGGGCGTGCCGTGTCTGGTCTGCTCCTTATGATGGGGAAAACCCTCCTCCTGAGTATTACCAGCCAGGCTCAGTGGAGGAATCAGGAAAGCAGCAGCCTCTAGCACAGCCTCAGAGGACACGAAGCAGCCGGGCAGTTTCAGATCTAAGCACCACTGGGGAGAGGACCAACCAGCTGGAGctggagtgggatgacagctaTGACACAGTCTTGTCCCCTGATGGTGATGAAATATTCCCCCAGAGGGACTCGGGGATCAAGGAGCCAGGAGTCCCCTTGGAACCTCCCAAGCACATCCAGGAAATGAGGAAGAATGCTATTATGCTCATTAAGGGGTCCTACATTGAAGAGTCAGACTTTCAAGATGATGTCATGGTATACAACCTCATTGCCCAAAAGGATGCCCAAGATGCAGTAGAGCGCAGTCCAGTGAGAACTGGGAAAGTAGGAGCTATAGCAACCGCCCCAAGCACCATGCGAAAACGACAAGAGCAAGAGCAGCAACAAGAGCCACATGCATTGGCCTTTAGCAATGGGCTAAACTCCTCAGCGCAGCATGACATGATGGAGGAGGATAACAAAATGAATTCCAACCTGAGCTCAGAGGGAAATGTGATGGAAAAGAGCATCAAAGTGCAAGATGACCTCAAACGCTGTGGGCCAGACCACAACTCCAACCTGCATGCACTTAGTCTGGATGGAGATGACTTAATATCCCAGTATGATGAGCTGATTAAGACACTAGGAGTGGAGTCTGGAAGCCCAGCCAAGGGGCAAAGAGAGTTTGTGAGTCCAGTCACCCCTGTGGAGGAGGACGAAGTGGATTTCAGCTCCTTTTCTGATACACCAGAGCCAGAAAAGACACCTTCACCATTTGGGTCAAAGAATCGTGCAGGGTATTCTAACAGTGTAAACAGGATCCATGATGTCCCTTTTACTGGGCCGTTTATCAGTGTGCTCCTGTCCCGGCTGGAAAACATGCTGGAAAATTCTCTACATGTCAACCTGCTGCTCACAGGCATTGTTGCCCAGCTGGCTGCCTACCCACAACCCCTGCTGCGCTCCTTCTTACTGAACACCAACATGGTCTTCCAGCCCAGTGTTCGCTCACTCTACCAGGTACTTGCATCTGTGAAGAATCAAATTGAGCAGAATGCATCCACAAAGAAAGACTTCCCAGAGCTAGTGACAGATGCTCAGGAGTTCCTGCTTTCTCAAGAGGATGCTCTAATTAGCAGAGGCATGCTTGAGGATCCCCTTGGTGCACATAATGGACAGTGGCCTCATGATCATGAAGAAAGAAGAGCTCAGGTGGTACTAAGCAGCAAGATAAAGCAAGTAACTCCCTATCCCAAGATCCCCCCCCAGGAAAGGAATGTTGTGTTTGCCACTGTTCTGTTCACAGAATTTCTCAAAGAACTTGCAGCCATTGCACAGGAACATTCAATTTTATCACATGTACCAATGGAGGAGTAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00015702 True 2301 mRNA 0.50 9 17006122 17018382

Neighbor

gene id symbol gene type direction distance location
AMCG00015693 NA coding downstream 328531 16651198 ~ 16677591 (-)
AMCG00015697 NA coding downstream 355202 16615613 ~ 16650920 (-)
AMCG00015696 NA coding downstream 415123 16581695 ~ 16590999 (-)
AMCG00015695 NA coding downstream 426912 16575258 ~ 16579210 (-)
AMCG00015690 NA coding downstream 459236 16536547 ~ 16546886 (-)
AMCG00015704 rps3a,rs3a coding upstream 109525 17127907 ~ 17131775 (-)
AMCG00015712 mab21l2 coding upstream 313270 17331652 ~ 17332731 (-)
AMCG00015711 NA coding upstream 318951 17337333 ~ 17488602 (-)
AMCG00015713 NA coding upstream 504897 17523279 ~ 17547496 (-)
AMCG00015717 NA coding upstream 952738 17971120 ~ 18028970 (-)
G99830 NA non-coding downstream 1709 17001994 ~ 17004413 (-)
G99816 NA non-coding downstream 135003 16870642 ~ 16871119 (-)
G99804 NA non-coding downstream 291287 16714447 ~ 16714835 (-)
G99777 NA non-coding downstream 405744 16599093 ~ 16600378 (-)
G99758 NA non-coding downstream 433846 16560585 ~ 16572276 (-)
G99860 NA non-coding upstream 116545 17134927 ~ 17135183 (-)
G99923 NA non-coding upstream 629669 17648051 ~ 17704580 (-)
G99936 NA non-coding upstream 778927 17797309 ~ 17799497 (-)
G99937 NA non-coding upstream 783776 17802158 ~ 17803919 (-)
G99941 NA non-coding upstream 886655 17905037 ~ 17905456 (-)
AMCG00015694 NA other downstream 394678 16592228 ~ 16611444 (-)
AMCG00015691 NA other downstream 470654 16524114 ~ 16535468 (-)
AMCG00015681 NA other downstream 532945 16467299 ~ 16473177 (-)
G99646 NA other downstream 783967 16221765 ~ 16222155 (-)
G99605 NA other downstream 903666 16017583 ~ 16102456 (-)
G99939 NA other upstream 819198 17837580 ~ 17837942 (-)
AMCG00015723 lsm6,LOC106610200 other upstream 1609223 18627605 ~ 18630665 (-)
AMCG00015752 NA other upstream 2956574 19974956 ~ 19981557 (-)
AMCG00015761 herc3 other upstream 3208985 20227367 ~ 20279644 (-)
AMCG00015800 NA other upstream 5662312 22680694 ~ 22702249 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000300_09725667_09740001 FAM160A1, FAM160A1A coding CI01000300 null 9724270 ~ 9742037 (+)