AMCG00015735 (LOC106602344)


Basic Information

Item Value
gene id AMCG00015735
gene name LOC106602344
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 18876488 ~ 18919607 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00015735
ttttttttttttttttttttttttaccgtagtgattattattttgatttcgtcggtgtttaattttttttaacatgaaacaTCTGAAGTTCGTGCTGGTATTGGCAGTGGCGGTGAATGTGTGGGAATGCGGTGATGCGAAGTTTGGTGAAAAAGGTGAAATTAGTCCAAGGAGGAGGAGATGTCTGGATGGAAGCACACCGAGGCGcctgaaaaaaagagagagaaaactgtcactggacagcagcagcagcgcggAGCTGTGTCACAGGCTGTACCCCCGGGTGTCCTGCTGTCACACCAGACGCACCGCCTATCAGAACCTGCACCTGCGGGACGCCCGGATATTTTCTGTTACCAACAACACAGAATGTGCAAAGCTGCTGGATGAAATCAAGTGTGCACGCTGCTCTCCACATGCTcaggttttatttcattcacCTGACGCAGAGGAAGCGCCTGACAGAGAGCCAGTTCTGCCCAAGCTGTGCAGAGATTATTGCAGAGAGTTCTACTACGCCTGCAGAGGTCACATACCAGaactGTTCCAGGCTGATGTAGATGAGTTCTGCCAGTATTATGGAAGAAGAGATAACAGTTTGTGCTTTCCAGATTTTCCAAGAAAACAATCACGGGGACCAGCCTCCAACTATTTAGACCCGATGGAGGATTATGAAAAAGTAGAAGATATTAGCAGaaaACACAAGCACAATTGTTACTGTGCTCAGGAGGTCCTGAGGGGGCTGAGGCAGTCCGTGGGGATTGTGAACTGTGGGGATGGCTCACAGCGCCTCTTCATCCTGGAAAAGGAAGGTTTTGTGAGGATTGTCACCCACAACATGGAGCTAGTCAAAGAACCCTTCCTCAATATCCACAAATTGGTCCAGAGCGGGATAAAGGGAGGAGATGAAAGGGGACTTTTAAGCCTTGCATTCCATCCCAATTACAAGAAAAATGGAAAGCTCTATGTCTCTTATACCACCAACCAGGAGCGCTGGGCCATTGGACCACACGACCACATTCTTCGAGTGGTGGAATATACAGTCTCCAGgaAAAACCCCAACCAAGTAGACCCCAGGACAATGCGAGTATTGATAGAAGTTGCTGAGCTGCACAGAAAACACCTTGGAGGGCAGCTACTCTTTGGGCCTGATGGCTTCCTGTATATCTTCTTGGGAGATGGGATGATCACTCTAGATGATATGGAGGAGATGGATGGATTAAGTGATTTCACAGGCTCAATCCTGCGGGTTGACGTTGACACAGAGAGCTGCAGCGCTCCATACTCCATTCCCAGGAATAACCCCTACTTTAACAGCACTAACCAGCCTCCTGAAATTCTCGCACACGGACTGCATAACCCAGGCAGGTGTGCCGTGGATCGCCATCACCTTGATATGAATGGCAGCCTGTTGATACTCTGCACGGACTCCAGTAGCAGGAATTCATCAACAGGAAGAATACTGCAGATTGTAAAGGGTAAAGATTATGaaaatgaaccTTCACTCTTTGATTTGAAATCAACCAGTAGCGCACCCCCAGTTGGTGGATTTATATACAGAGGCTGCCAATCCAGAAGGCTGTATGGGAGTTTTGTCTTTGGGGACAGAAATGGGAATTTCAGAATCCTCCAGAAATCCTCAGCAGGCAGAATCTGGCAGGAGAAGGCCTTGTGTCTTGGCAGCAGCGGTTCGTGCAGCAGCTCTCTGGTGGGTCACATCTTGGGCTTTGGAGAAGATGAATTAGGTGAGGTGTACATTTTGGCAAGCAGCAAAAGCATGACCCAGTCGCACAGCGGGAAACTTTACAAGCTGGTCGACCCAAAAAGGCCTCTGGTCCCAGAGGAGTGCAGGCGGACGGTGCAGCCCCCCGCGCCGCTGCTGACCGAATGCTCCCGCATGTGCAAGAATGGCTACTGCACCCCAGTAGGCCGGTGCTGCTGCAGCCCCGGCTGGGAGGGTGACTTCTGCAGAGTGGCCAAATGTGACCCAGCATGCCGTCATGGTGGGGTCTGCGTTAAGCCAAACAAGTGCTTCTGTAAGAAAGGCTACTCAGGAATGCAGTGTGAACAAACAGACCACAGTGTTGGACAAGAATCCAGAGAAGGAATCCTGGACCAGATCATAGACATGACATCATACCTGCTGGATCTGACTAGCTACATTGTATAGGCAAACTCAACCTGTGTTTCTTCATCCCCAAGCTGTATGAAGAAGCCTTAGTCTGATCTTTGTTCATCAACACGACTGTTCATCTGGACAGCCAGACACTATAGACCAGTGCCAGTTGCACCATGGACATTTCTACTCTAGTTGATAAGCTATGTTCTGCTGTTTTCAGAATGGACATCGCAAAATAGATTTCAGGAACCAGCAAGACGTTTGGAGGCATTGTTTTTGAAGTCCATTTTGAAGTTTGGGACATTGTTCGTATTTCCCCTTCAGGTCTCTAAACCAAGAGTCTCAGATGCTTTAACATAGATACGACATCTTTAAGGATTCAGCTGAAGGTGTTTGCTTATGCATTAAACCATTGTTTTCAGCCGACACTGTATGTTTCTTGTGGGACTTGCTAAGAACAGCCCCTTGTGTAATGTGGACAACTTCACCGAACTGCTGTGTTGGCCCAGTGTGGTCCACTAACTCTCTCGCTGAAAGCAAAAATGCTCTTTTAAAGATAAACCCTCTAAAGGTCTTGTTATTAGCTTTGCACACCTACCAAGATCATTAATGAAAAGCATGAGGATGACATTCCCAACTCATTATGACAAGTGGCCCCCGTTCCATTTTAAAGTTCATTAGAAATCAAGCAAGTTATACTTTACATTTCCATAATCTGTGAAAAAGGCTTGCTGGGTGTCCCAATGAATTCTTTATGCTTCCGTCAGAAGGAGTCTGAGCAGGTAAAAAGAGACGTGCATCCAAAACAGCATATAACAAAGCAGATGGATTATTGTCTTAGATAGTACCTTCAGAGAAGATTCATGGCAGAACTTGAAAAGGCTATTCATTGCTGTATTACATCTTGCTGTAGAGGAGTGAGAAACATAAGAGCTCTTGAATATTAATAATGCTAGACTGCTGTCTCCACATTGAAGTGCACAAAGCAGACAACCTTTTATTGTTGTGCCTTACCTGTAAacaaggaagaagaaaaaaacaagatatcAGTCCTGGGTTGAattttctattcatatttttgaaCACTTAAGTCTTTCATAAGGGCCCAGATACAACCGAAAATTGAATGTTTCACTGCATTAAACAGGTAAGCAAAAGCAATATGGTCTTCTTAGTACTTATTAGTATTGTGTACTTAGTATACAGTATCAAATTCCACAACGTGATCCTGTTTTGGGGCagaaacctttttgttttgttgtgtctCTACTTTGTGTTATTGCGAAAGAACAAGAGTAAGCATCAGTTAAGATTGTACTAAATTATAAAGGTTGAAGTGTATTAGAACAGCAATGTGCTAAACAAGgtgttgtatttattgcaatgatacaataaaaaacaaataggaaatCACATATATCAAGATTTCATTCTAATATGTCTTGGTTTTGTTAGGTGTTGCTTTTCTGTATACAACATGAAATTAAGAATAGCACATCCTTGTATGAATAAAACCTTCCTAACTCTTTGATACATCACCAGTTTTTATGTTGACTGCCCCCTAAACACAGAAACTTTATCACAGACCACATAATAGCAGTCCACTTCAATGATACAGCTTCACAAAAGAGTATTGACAACAAAACAGTACAGAACTGCCAAATCCCTGGGGCTGGTATTGCATTGTAATGTGTTCAGCATTCAAAAAAAGGGAGAGTTCAGTGTGACATGTATTTCACACTGAATGAGAATACATAAAGATGgaaagtaattaataatttgttccatgtttttatttgtaaaggtATAATAATATATGGACGGTGGGTTGAGGTTAGAAAACTGACTTACCGTAAAGCTGTACATCCATTCACTCGCTGTTGTATTTACTTATACAGTGTATCTTTATTATATGAGACCTCCAATACATATATCATTCCTTTGTCCAGGAAATATGCTccatgtaaattaaacaaatgcttGTAAACGCGAATAGTGTAACACTGAGGGCAAAGAAATGAATGACACGTTTTAACCTCTTCTGTCTTTGCTGTTGTACATCTGCACCACTAAAgaactatttgtattattttgtatttatgtttttaagtctTCCGTATATAGAGAGATGTATGTGCAGTGTAagggaaaatgcattttctgaacAAGAGagcacagacagaaaatataggCCACTCGATTTCAATGTTGGATTTAAGACAAATTTACCACATTTCGGAAACATGTTTAGGATTCCAATTCAGtgcagaaaaatatttgattaggATTCTTTGGTTGCTTTGTAAGTAAAGAACTGCTGCAAGCATCGAATGGTGTGAGATAAAGGGAACTCGATTTTGAAAGCTGCAGTGCTCTAAGCCAGTATAAATGTGATGTACtgaggatttattttatctcGGCAACGTTAGGATCTTAAGGTCGGTGTagtgaaataaaagcaacaccATTCAAACTGAACACGGTCACAACTGATTTTCATGCAGTAGTACTAAATAGACCCTTTGAAAgtgaatgttttcttctttgacagaagtttatttattttataggaaTCATGCATACTTTCATGCCCAACAGATAATTGTATACCTTTTCTTCAGTGGAGTCAAGGCATATTCTGTCCTGAAGGTACTTTTAGCAACAAGCACCATCCGTCTTGTGAGTCCCTAACTCCACTCTAAACCCAGCCCTGCCATTACTTTAACCCAAAATGTAGGAAGTTTTCAGGAAATACTTCACCCTGCGAACCACATAGCTGTCTCGTGATTTTGTTGACAGCCTCTCTTACAACACCTACTTATCACCTCGCTGAATTTTATAGCCAAGAGTCGATGTGGGACTTGGTTTATAAACtccagcataaaaaaaaaaatacttgaggTAGAGTAAATAAAGTACTGAAATATAAGACTGATCACTAATGTAAAAATTACAAAGAGAAATATTCACAGTTAGTCTTTCTATTCACTGCGTcattggaatacatttttttgcaaTATGTTCACCTCACTTTTGAATGTCACTCACTCTCTGTTGCGAGTTTTTGGGGGTTTGCTCTTCAGAGTATGAAGTATGTTTTGAATAACCAGGTCAATAGTTTTCCTTCATTTAACCTAACACTGCCTTGGACGGTAGAAAAGCAGTGAAACTATGTACATTTTTGCATAGGTACCATTTCCAATTGGATTTTAAACTATTCTCAAGCTTTTTACACACGCTGTAATATATGTATGATtcaattttctatttgtgttgtgagaacaaatgtaatttgctcTGCGAAAATAATGCTGTAATAGTATTGTTTACAAATCTCTTCATGGGAATTCAAtctgcagcaaaaacaaatgtattttattgtttttgtgttgtgttttggggattttttttattttttgagaggGGGGTTGTTATTTCATACATGTGTGAGCTATTGATTATACCTGGTTTATTACTTAATGAATTTTATGCTGTAAGTTTAAACTCTATGTAATGTTAGCACTTAATGTGAAGCTTTTATTGGGGCTGCTGAGAAGACATTGTGTGAATAGAGCAAACTCTGTTTCATTGCTATTATTGAAATAGTTACGCAAACGTTATTTAAAGTCCTGTTTCTACATTTTGTTCATGTAAAGAATTtgataatgtattgtaaataaaactaGGGTTATTGAGACAACATCTGAGTTGGCTCTCAGAAATATCAATATGTCTATTAAAGATTAGCATGTTTTAAA

Function

NR:

description
PREDICTED: hedgehog-interacting protein-like, partial

GO:

id name namespace
GO:0045879 negative regulation of smoothened signaling pathway biological_process
GO:0048635 negative regulation of muscle organ development biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0005975 carbohydrate metabolic process biological_process
GO:0033333 fin development biological_process
GO:0031226 intrinsic component of plasma membrane cellular_component
GO:0048038 quinone binding molecular_function
GO:0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor molecular_function

KEGG:

id description
K06231 HHIP; hedgehog interacting protein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00015735 True 5877 mRNA 0.41 13 18876488 18919607

Neighbor

gene id symbol gene type direction distance location
AMCG00015733 NA coding downstream 13680 18860261 ~ 18862808 (-)
AMCG00015732 abce1 coding downstream 37239 18830067 ~ 18839249 (-)
AMCG00015730 smad1,LOC105020940,LOC106610220 coding downstream 92610 18775360 ~ 18783878 (-)
AMCG00015729 mmaa,LOC106610208,LOC107550599 coding downstream 106153 18740060 ~ 18770335 (-)
AMCG00015724 NA coding downstream 258801 18601232 ~ 18617687 (-)
AMCG00015738 smarca5,LOC107703846 coding upstream 191209 19110816 ~ 19125482 (-)
AMCG00015739 NA coding upstream 213202 19132809 ~ 19154312 (-)
AMCG00015740 NA coding upstream 319703 19239310 ~ 19259122 (-)
AMCG00015743 znf330,zn330,LOC107746098 coding upstream 827657 19747264 ~ 19760155 (-)
AMCG00015749 NA coding upstream 988032 19907639 ~ 19910150 (-)
G100109 NA non-coding downstream 69812 18799570 ~ 18806676 (-)
G100102 NA non-coding downstream 139449 18736456 ~ 18737039 (-)
G100040 NA non-coding downstream 278292 18591452 ~ 18598196 (-)
G100039 NA non-coding downstream 315541 18560715 ~ 18560947 (-)
G100038 LOC100136012 non-coding downstream 359759 18516451 ~ 18516729 (-)
G100185 NA non-coding upstream 212753 19132360 ~ 19132566 (-)
G100218 NA non-coding upstream 705453 19625060 ~ 19699829 (-)
G100222 NA non-coding upstream 752135 19671742 ~ 19701459 (-)
G100233 NA non-coding upstream 793320 19712927 ~ 19713216 (-)
G100257 LOC104962440 non-coding upstream 802061 19721668 ~ 19740201 (-)
AMCG00015723 lsm6,LOC106610200 other downstream 245823 18627605 ~ 18630665 (-)
G99939 NA other downstream 1038546 17837580 ~ 17837942 (-)
AMCG00015694 NA other downstream 2265044 16592228 ~ 16611444 (-)
AMCG00015691 NA other downstream 2341020 16524114 ~ 16535468 (-)
AMCG00015681 NA other downstream 2403311 16467299 ~ 16473177 (-)
AMCG00015752 NA other upstream 1055349 19974956 ~ 19981557 (-)
AMCG00015761 herc3 other upstream 1307760 20227367 ~ 20279644 (-)
AMCG00015800 NA other upstream 3761087 22680694 ~ 22702249 (-)
AMCG00015825 LOC106569940,LOC107700648,LOC107717728,LOC108274877,LOC107565247 other upstream 4824183 23743790 ~ 23746703 (-)
G101067 NA other upstream 6073346 24992953 ~ 25000890 (-)

Expression


Co-expression Network