AMCG00015739


Basic Information

Item Value
gene id AMCG00015739
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 19132809 ~ 19154312 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00015739
tgtttttttccccttctcttcTCGCTCCTCTCTGCAGGCATGGAAGAAAAGGTGGTTTGTTCTTCGCAGTGGCCGTCTCACTGGGGATCCAGATGTGCTGGAGTACTACAAAAATGACCACACCAAGAAACCCATACGCGTCATTGACCTGAACCTGTGCGAGCAAGTGGACGCCGGACTGACGTTCAACAAGAAGGACCTCGAGCACAGCTTCATTTTCGACATCAAGACCATCGACCGGGTCTTCTACTTGGTCGCGGACACAGAGGAGGAGATGAATAACTGGGTCAGGTGTATATGTGACATCTGTGGGTTCAACCCTACTGATGAAGATTCAGTCAAGCCCTCAAACCCATCTAACAGCGTAGCTATGGATGTGCCACTGCACCCCAGTCTAGCCCCCATGGGCCCCTCGCCGATCAATAATGTACCGCCCCCCTACCAGCCTGTCAGCATCCGTCACCTGGAGTCCTCATCCAGTCAGGAAGATCCTCAGGACTACCTGTGGCTGTCCAACTGTGAGAGCAAGAAGCCTGAACCCGCTAGTCTGGCATCGTCTTTCGCCACAGAAGAGGGGGATGAAGAGTACTTGCTGCTTGAAGAGTGCGAAAGCAAAAAAGCTCCCCTGGCCAGCGTGCCTCATGCAGATTCCTCCAAGTCCACCTCCTCGGAGACGGACTGCAACGAAAACCTCACCTCGCACAGGTCCTCTGCCTCGAAACACACCTCCGTCAACGGCTTCTTCCCCCAGCAGGCCGGCATTTACGACTCGCCGCCCCCCCGCGCCGCCTCCCTCTCCGTGGAGTCGAGCCTCTACAGCCTTCCTCGCAGCTATTCCCAGGACACTGTGCTCCTGCCCAAGACCGCCTCCTCGCCCCAGGTGCAGGAGGCCGACTCTGGGGGAGACCTGTACGTCTTCAACACGCCCTCTCGCAAGTCCTCCATGGAGACGCAGATGCGGCAGGTGTCGATTAGCAGCTATGACATTCCCCCCACTCCGGGCGGGGCCTCCACTTATCAGATCCCCAGGACAGCTTGCCCTGATGGGGCCACGGTGGGACAGGCTTCCTCCCTACCGGACGTACCCCCTCCCCGCCCACCGAAACCCTCCCAGGCTGCCCCCCCAGAACGCTCCCCTACAGATACGTACGCCGTCCCCCGATCGGTGTCTGAAACGGACAATAACTACTGTGTTCCCACCAGCACCGGAAACAAGGCCCTCCGTAGCAACACCATCGCCACTGTGGACTCCTCGCGCCTGTGGAAAGATTATGGCTCTCAAGATTGCTATGACATCCCCAGGTCATTTCCTACAGACAGAAGCAGTTCACTCGAGCTAAATGAAAGCTTCAATAGTTATCTAagaaacaaaggTATGATGCCGGTGGTCAGCACGTCGACTGAGGAGATGGATGAGAACTATGTGCACATGAACGCCAACTCCCCCTCCCACCACCCACCTGGCAGCCTCTCTGAGCCAATCCAAGAGCCCAACTATGTGCCCATGACGCCGGGCATGGAATTCCCATCCCTGGGGAAGCAGGTCCCCCCACCAGCACATATGGGCTTTCGCTCCAGTCCCAAGACCCCTCCCAGAAGGCCCGTTCTCACCGAATGCCAGCCTCCCCCGGTCGACCGCAACCTCAAACCGGACCGCAAAGCTAAGCCAGCACCCCTGGAGATCAAACCCCTTCCTGAGTGGGATGAACTGCCAGCTCCAGTACGATCTCCTGTGACCAGGTCTTTTGCCAGGGAAGAAGAGTCCTTCTACTGCACTGTCCCCATTACCCCTGTTAAGCGGGAGGTTTCAGACCTTGACACGATTGAGGAGAACATGAAGCTCGGGGCTCAGATGAACGCAGATGGTGGCAGTAGTCCAATGGTGAAGCCAAAAGGTGACAAGCAAGTGGAATACTTAGACCTGGACTTGGACCCTGGAAAATCAACACCGCCACGGAAGAAGAAAAGCAACGGGACGGGCAGCACGGCCTCAGACGAGCGCGTGGATTATGTGGTGGTCGACCAGCAGAGAACACAAGCACTGAAAAACACGCGGGAGGCCTGGAATGACGGCAGGCAATCTACAGAGTCCGAAACGCCTTCGAAAGGCACCAAGTGAGCCCACGTGACGcccgccgccccccccccccccccccttcgaGACCCCACAACCATCACGGCGGGATATTGACTAAACACTGACgctgccacaaaaaaaaaacagcccctGTGAAAAAGAGGCTGAAAGCAACACTAATAATTGAAGTCCTGTCAGTGAGAGactaagaaaaaggaaaataaatacaaatgaatttcagcattttgtttacaatgCCGGCTGTCTGAACCCAGTGCCCTTCTTCAGCATTTTAAACGCAACACATTTCAGCTGAGCCCTCTGTATGGCACGTTATGACATGTAGGGGAAATCTACCTGCTTAGTCTGTCTGGAGCCTGAGAATACATGGATACAGCTGGACAGTCTTGGACCAGTGAACACTTTATTGCATTTCTTctcttgttatttttgttgattCCCCCTCTAATCACACAGTCCCATCAGCtcaataaaatgttctttgttttcttaagaTCATAGCtttcacatacaaatacactCACAGGCACACCGTATCTTTTCACATTTGTTGTGGAACgttttttcactttctttagTCACAATCTCTTGTGTAAGGGtcatattcaaatttaaaaaagtcaaCAAAATAGACCATTTTCCGTTTCTGATAAACTCTCGCCCACCAAGTTATAtctggttttaaattattttaaccaTGTAACTCCATTAGGTCGCTtccagatgtttgttttaaatttccaGGGGTTTTTCTGTATCTTATAAATCTGCAGTTTGgcttgaaaactgaaaactgaaaaaaaaaagaaaaaaaaaaaacttgttctTTAGCATTATGTTACATTTGCTAAGACATAAATGCAAGTACATTAGTCTGTGTAAAAAGTGTTATGTATATTCATTAAAGTGTCCTTCGCGTGTATTGAATATCTACTGTGTGAACGCTAAAGTGCGGATTCTGCGGGATAGAGTCCTGCACCTACTGAGGTGGTCATGTCAGCTTTATGATATGAAAATAGTGGAATTGATAACTGTGACAGCTTTTTAATGGGAAGTTTGCAAGCTTTCTGTTAGTTATGCAAGGTAACAAACTctctaaaggaaaaaaaaaaagaaatcaggtACTCATAAATACTAATACAGCTatccatttataatttattttttaataaaagtagtCAGGTGTTCATCTTGTAAAAGTAGTGGTCCTGCTGTCCACTCACTACTGATAAATTTAAAGTTTTGTGATGATCTGTAAACTGTTTAATAAtacttaagaaaacaaatttgCTGTTAAAGATGCCTTTTTTGACTAGTGCcagtttttatttgtgcatcaggaatttgttttattcttcattCCTTTAACTAGATAGCTTGTTCAACATTAACGTCtcttttattagattgttgtaatttattgttttttttttttattgctttccacattttctttttcttgggaCTGCCTTATGTAGATGACTTGATATTCTGCTGTAAATAAGACAAAATATTTGACCTTATGCCTAAACTCTTAAAGTACTTATGAATCTTactgtttgtaaatgtactaGCTTTACTAACCTCTCCGTACTTAAATGTAGAAGACACAAAGCATATGTTCTGCTTTGTCCAGATACTCTTAGCTCACCTGTACATATTTGCTTTCCTATTCCAGCATGTACCCGTACAAAAGGTGTGCCTACGCTGACCTGACGTTTTATGTCCCGATGACTTAATTTCCCTCCTCTTCTGCAGAAGTTACTTGTTACATGACAAACTAAATCTTGAGgctttgtatctttttttaaaaaatcaatcaaaagacaaatgtacattttaaagtgaactAAATAAACCAGACCGGTATGCATTATAAACGTCACAGAGaccaattaatttattttatgtaggatgtatttgaatgtatcaTCCTTTTTCATTCATGTTTCAGTTGCATGCTCTAGGTAATGAACCCTAAAGGGATTCTGGGATCCTCAAGAAGATGGCTTAGGGCTGAGACATTAATATGAAGTTGGAAATAAAGAGAGGGCTTATTCACGCTGATGCCAGTCTAAACAGCACTTTGAAAAGGATCCAAACCTCCCAAACAGGTAATTTAAGGTGGCAAAAAA

Function

GO: NA

KEGG:

id description
K09593 GAB1; GRB2-associated-binding protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00015739 True 4233 mRNA 0.46 10 19132809 19154312

Neighbor

gene id symbol gene type direction distance location
AMCG00015738 smarca5,LOC107703846 coding downstream 7327 19110816 ~ 19125482 (-)
AMCG00015735 LOC106602344 coding downstream 213202 18876488 ~ 18919607 (-)
AMCG00015733 NA coding downstream 270001 18860261 ~ 18862808 (-)
AMCG00015732 abce1 coding downstream 293560 18830067 ~ 18839249 (-)
AMCG00015730 smad1,LOC105020940,LOC106610220 coding downstream 348931 18775360 ~ 18783878 (-)
AMCG00015740 NA coding upstream 84998 19239310 ~ 19259122 (-)
AMCG00015743 znf330,zn330,LOC107746098 coding upstream 592952 19747264 ~ 19760155 (-)
AMCG00015749 NA coding upstream 753327 19907639 ~ 19910150 (-)
AMCG00015750 NA coding upstream 773070 19927382 ~ 19928527 (-)
AMCG00015753 LOC108275807,LOC108441536 coding upstream 777973 19932285 ~ 19945300 (-)
G100185 NA non-coding downstream 243 19132360 ~ 19132566 (-)
G100109 NA non-coding downstream 326133 18799570 ~ 18806676 (-)
G100102 NA non-coding downstream 395770 18736456 ~ 18737039 (-)
G100040 NA non-coding downstream 534613 18591452 ~ 18598196 (-)
G100039 NA non-coding downstream 571862 18560715 ~ 18560947 (-)
G100218 NA non-coding upstream 470748 19625060 ~ 19699829 (-)
G100222 NA non-coding upstream 517430 19671742 ~ 19701459 (-)
G100233 NA non-coding upstream 558615 19712927 ~ 19713216 (-)
G100257 LOC104962440 non-coding upstream 567356 19721668 ~ 19740201 (-)
G100261 rnf150,LOC107703843,LOC107746087 non-coding upstream 647664 19801976 ~ 19802225 (-)
AMCG00015723 lsm6,LOC106610200 other downstream 502144 18627605 ~ 18630665 (-)
G99939 NA other downstream 1294867 17837580 ~ 17837942 (-)
AMCG00015694 NA other downstream 2521365 16592228 ~ 16611444 (-)
AMCG00015691 NA other downstream 2597341 16524114 ~ 16535468 (-)
AMCG00015681 NA other downstream 2659632 16467299 ~ 16473177 (-)
AMCG00015752 NA other upstream 820644 19974956 ~ 19981557 (-)
AMCG00015761 herc3 other upstream 1073055 20227367 ~ 20279644 (-)
AMCG00015800 NA other upstream 3526382 22680694 ~ 22702249 (-)
AMCG00015825 LOC106569940,LOC107700648,LOC107717728,LOC108274877,LOC107565247 other upstream 4589478 23743790 ~ 23746703 (-)
G101067 NA other upstream 5838641 24992953 ~ 25000890 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000049_04064603_04090446 GAB1 coding CI01000049 null 4064603 ~ 4090446 (+)