AMCG00015800


Basic Information

Item Value
gene id AMCG00015800
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 22680694 ~ 22702249 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00015800
ATGACAGGTGAGATCAGGACGGGAACGCCCCGCCCACCGAGGACGCCGGCGATTGATTGGTCTGTCGACGTGTCAGTTATGTTGGGCTTTGACGTCACTGGGCTTTACGCCGAAGCCTGGGCTCTGTGGCTGGTGCCCCCACTAGGGGATCACCTCTTGCTAAAGCTAGCTGTAGCCTTCACTGCCAGCCAATGtgcctgccctgccctgccctgcccttcCTGCAATGTCCTGCGAAGTCAGCGCAAGGGGCCTGGCCATTGTGCCAGAGCTGAGATCACAGCCTGTTCCTCTGTGGAGCTGGAAGGGAAGGTGACTCCTCCAGCCCGGTTCCTGGAGCAGAGCATCTGTCTGCAGCAGAGCAGGGGGAGCTCTGACCCCCGGAAAGCACGTTTATCTTCCCACTTGGCTCCTGGCAGCCTCAGTTCTGAAGAGCCGAGCTGTGAACGCTGCGCCACGTTGGCAGATGCCCAACATGAACAACCTCCAGACAGGCTTGTGTTTCAGGTGCTGGAGGAGACGGACTCGCTGCCCTGTCGCCCCCTTGCTCCCCCTCTCTCGGTGACAGCTGCAGCATTGCACCCCTCACGCCCTCCCCTTCCCCGGTCGTGGTAG
>TU125743
gagagagagcagttgacagggggagagaggaagggagactCTGGGAGACACAGGGGTTTCCAGTTCAGACAcaaaaggggagggggggggttggttTGATTTGTGTATGTTGCAGGCTCCATccagcccccagccccctccACCCAGCCTCttccacacgcacacacaatgtATTCCCCATTAAGTCAGTGCCCagccttccctctccctcccctcccctccacactGGAGCTCCTATGTGGGTCTGACTGCCTGTGTGCCTGTGAGTGTGTGCTGGGAGTCCCTCTGAATCTCTGTCTTACTTGCATTCCACGACAGCCCAGGGAGTCTGTCTGTCTTACCCATCGATCTCAATTGGCCATAACGGAGGAATACAGCGCAGAAGAAATAGAAGTTGGCCAGAAGTTCTTGCGGTTAAGCACTCTTTTTAATTCAGTGGTTTAATTTTCGGTGGTTGAATCCACTGTTCGGTGGGAAGCAGACCTTAGAGCATCTTctcgacttttttttttttccttctgctctTCTGTGCTGGGATATTTACTCTCAGGGATTGTCTCTTCAGAGAAGGAAAGGAACATTTCATTAACCACCCAGGGCTGCGCCACGTTGGCAGATGCCCAACATGAACAACCTCCAGACAGGTGCTGGAGGAGACGGACTCGCTGCCCTGTCGCCCCCTTGCTCCCCCTCTCTCGGTGACAGCTGCAGCATTGCACCCCTCACGCCCTCCCCTTCCCCGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00015800 False 615 mRNA 0.61 7 22680694 22702249
TU125743 True 743 lncRNA 0.54 3 22683424 22693540

Neighbor

gene id symbol gene type direction distance location
AMCG00015799 hspa12b,LOC102781497,LOC107098312 coding downstream 1941 22671903 ~ 22678753 (-)
AMCG00015798 hspa12b,LOC106578073,LOC102781497 coding downstream 9292 22667757 ~ 22671402 (-)
AMCG00015793 NA coding downstream 20973 22657674 ~ 22659721 (-)
AMCG00015792 exoc6b,LOC107562050,LOC107668338,LOC107750632,LOC107588190 coding downstream 44748 22622744 ~ 22635946 (-)
AMCG00015791 exoc6b,LOC107562050,LOC107668338 coding downstream 81032 22570736 ~ 22599662 (-)
AMCG00015803 NA coding upstream 19232 22721481 ~ 22725963 (-)
AMCG00015802 NA coding upstream 28107 22730356 ~ 22736551 (-)
AMCG00015804 NA coding upstream 68456 22770705 ~ 22780038 (-)
AMCG00015805 NA coding upstream 90452 22792701 ~ 22793900 (-)
AMCG00015809 NA coding upstream 179738 22881987 ~ 22886388 (-)
G100636 NA non-coding downstream 487385 22192976 ~ 22193309 (-)
G100567 NA non-coding downstream 887106 21793342 ~ 21793588 (-)
G100566 NA non-coding downstream 891792 21788696 ~ 21788902 (-)
G100555 NA non-coding downstream 1171207 21447151 ~ 21509487 (-)
G100554 NA non-coding downstream 1177705 21418675 ~ 21502989 (-)
G100680 paip2b,LOC103027680,LOC107551309,LOC108263850,LOC107674237 non-coding upstream 10534 22712783 ~ 22714959 (-)
G100684 NA non-coding upstream 18689 22720938 ~ 22721365 (-)
G100703 NA non-coding upstream 114688 22816937 ~ 22817413 (-)
G100733 NA non-coding upstream 133004 22835253 ~ 22923407 (-)
G100754 NA non-coding upstream 277573 22979822 ~ 22983984 (-)
AMCG00015761 herc3 other downstream 2401050 20227367 ~ 20279644 (-)
AMCG00015752 NA other downstream 2699137 19974956 ~ 19981557 (-)
AMCG00015723 lsm6,LOC106610200 other downstream 4050029 18627605 ~ 18630665 (-)
G99939 NA other downstream 4842752 17837580 ~ 17837942 (-)
AMCG00015694 NA other downstream 6069250 16592228 ~ 16611444 (-)
AMCG00015825 LOC106569940,LOC107700648,LOC107717728,LOC108274877,LOC107565247 other upstream 1041541 23743790 ~ 23746703 (-)
G101067 NA other upstream 2290704 24992953 ~ 25000890 (-)
AMCG00015892 spcs3,LOC106602378 other upstream 5284506 27986755 ~ 27997677 (-)
AMCG00015891 wdr17 other upstream 5339314 28041563 ~ 28069876 (-)
G101456 NA other upstream 5459588 28161837 ~ 28257732 (-)

Expression


Co-expression Network