AMCG00016110 (ufm1,LOC107701138)


Basic Information

Item Value
gene id AMCG00016110
gene name ufm1,LOC107701138
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 7680911 ~ 7753437 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016110
ATGAGAGATGTGGAAAAGGCTCTGATTCAATCAGAGTCCTCTGAGAAGACTGACACTGTGCTGGGGTTAAGTGTTCCAGATAGCACACCGTTTACAGCAGTTTTAAAATTTGCAGCGGAAGAGGAAATGTGTTCCTTAAGCATGGATCAGAACTTCGCATCATTCCCAGAGACCGAGTGGGAGGCTGCTAACCAGCGACACGGTGACTCATCGAGGAAAAGGGCGCATAGTCgcatctttttttaaacagtttatttatttttggtattaaaATTCTCCTCTCAGTTCTGTTGTTAGAGAGTATCCTTCAAAACAGACAGAGATGACCTGAATCAATGCCCATATAtccaaaatgaaatgcttgaaagcattttcatattaaacaaaattaaataacaataacattttaggtggtatgttatgtattattacacttAGATGATGGGATCTGTAATGCCTTCTGACATTTAATGGATACTCCTACACTATAATCACTGattcacacgcacacacttaaAGGAAAAAGAAGACTAGAAGAAAGCGGTATTTACTGTCCTGCCTCTTTACCCTATTAACTGTTATAGGCAGCAGGGGAGTAGCTGATGTACTTTAGAGGAAGATTTTGTACCTCTGCCAAACCTGAATTGAGTTTACTGATTAAACATGATGTACACCGCATTCGTTTGGATTGATTTGAGTTTCCATTGGGGGGAGTTGGAAAGCCACCCATTTTCTCAGTCATGACTTCAGTTCTGTTTTTGATGTATACTTTCAAAGGCCATTTATTATGTcttaaggcaaaaaaaaaaagagtaatcaCTGTTGTACATGAAGGCTGATTGATGACAGTAGAATTTCAAGTTATGACTGAAGTGTTTCCCATTAAACTTGTGCTTGTATCGAAAACCAAA
>TU13891
GGTACAGCGGATTATAGGAACCGAAGGATCTGCCTGCTCGGAAATGAATATTTTCTGACAACATATCGAAACTACAGAGGATGTAATTAATACCAATTCAGTAATAATATAACCAATAGACATATTCTCGTTTTAcgtgctaaataaattaatcacatcaAAGTACTAGCAGCATTTTCCAAAGAGATGATCGTATCGGAAAGATGACGTGTAAGTCCGTGCGCCCCTCACTTCCTGGTTTGGCTAGGGCTGTGTGCGGAGAGCTGACAGGTGGACACAGGCACTGGAAACATGTCAAAGGTAACGTTTAAAATCACCCTGACTTCGGACCCTAGACTACCCTACAAAGTGTTAAGTGTTCCAGATAGCACACCGTTTACAGCAGTTTTAAAATTTGCAGCGGAAGAGTTTAAAGTCCCAGCAGCAACAAGTGCTATCATTACAAATGATGGCATTGGAATAAATCCAGCTCAGACAGCAGGAAATGTGTTCCTTAAGCATGGATCAGAACTTCGCATCATTCCCAGAGACCGAGTGGGAGGCTGCTAACCAGCGACACGGTGACTCATCGAGGAAAAGGGCGCATAGTCgcatctttttttaaacagtttatttatttttggtattaaaATTCTCCTCTCAGTTCTGTTGTTAGAGAGTATCCTTCAAAACAGACAGAGATGACCTGAATCAATGCCCATATAtccaaaatgaaatgcttgaaagcattttcatattaaacaaaattaaataacaataacattttaggtggtatgttatgtattattacacttAGATGATGGGATCTGTAATGCCTTCTGACATTTAATGGATACTCCTACACTATAATCACTGattcacacgcacacacttaaAGGAAAAAGAAGACTAGAAGAAAGCGGTATTTACTGTCCTGCCTCTTTACCCTATTAACTGTTATAGGCAGCAGGGGAGTAGCTGATGTACTTTAGAGGAAGATTTTGTACCTCTGCCAAACCTGAATTGAGTTTACTGATTAAACATGATGTACACCGCATTCGTTTGGATTGATTTGAGTTTCCATTGGGGGGAGTTGGAAAGCCACCCATTTTCTCAGTCATGACTTCAGTTCTGTTTTTGATGTATACTTTCAAAGGCCATTTATTATGTcttaaggcaaaaaaaaaaagagtaatcaCTGTTGTACATGAAGGCTGATTGATGACAGTAGAATTTCAAGTTATGACTGAAGTGTTTCCCATTAAACTTGTGCTTGTATCGAAAACCAAAGCAGTGCTGTATTTAATTGAAGCTCATAACAAGCGCCCTAATTGTTTCCCC

Function

symbol description
ufm1 Predicted to be involved in protein K69-linked ufmylation; response to endoplasmic reticulum stress; and reticulophagy. Predicted to be active in cytoplasm and nucleus. Is expressed in axis; hatching gland; notochord; and polster. Human ortholog(s) of this gene implicated in hypomyelinating leukodystrophy 14. Orthologous to human UFM1 (ubiquitin fold modifier 1).

NR:

description
PREDICTED: ubiquitin-fold modifier 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016110 False 911 mRNA 0.38 4 7680962 7753437
TU13891 True 1320 lncRNA 0.39 6 7680911 7688962

Neighbor

gene id symbol gene type direction distance location
AMCG00016107 frem2b,LOC106581006,LOC106612873,LOC108433801 coding downstream 64613 7608507 ~ 7616298 (-)
AMCG00016108 LOC107730863,LOC107704782,LOC103363427,LOC101479746,LOC102203644 coding downstream 106431 7529911 ~ 7574480 (-)
AMCG00016105 NA coding downstream 154657 7520166 ~ 7526254 (-)
AMCG00016106 NA coding downstream 172816 7473851 ~ 7508095 (-)
AMCG00016097 synj1 coding downstream 583384 7061817 ~ 7097527 (-)
AMCG00016111 NA coding upstream 277488 8030925 ~ 8034752 (-)
AMCG00016118 NA coding upstream 385297 8138734 ~ 8139063 (-)
AMCG00016125 NA coding upstream 602242 8355679 ~ 8357486 (-)
AMCG00016127 NA coding upstream 662813 8416250 ~ 8433185 (-)
AMCG00016129 LOC106612894,LOC102298628,LOC102206684,LOC101482631 coding upstream 681683 8435120 ~ 8494583 (-)
G11216 NA non-coding downstream 60058 7620640 ~ 7620853 (-)
G11215 NA non-coding downstream 60914 7619698 ~ 7619997 (-)
G10956 NA non-coding downstream 1457682 6222863 ~ 6223229 (-)
G10952 NA non-coding downstream 1790995 5889588 ~ 5889916 (-)
G10940 NA non-coding downstream 1839207 5841477 ~ 5841704 (-)
G11243 NA non-coding upstream 118980 7872417 ~ 7872769 (-)
G11247 NA non-coding upstream 213634 7967071 ~ 7967305 (-)
G11288 NA non-coding upstream 340363 8093800 ~ 8095204 (-)
G11300 NA non-coding upstream 371553 8124990 ~ 8125383 (-)
G11309 NA non-coding upstream 382977 8136414 ~ 8138670 (-)
AMCG00016074 NA other downstream 2751011 4903856 ~ 4929900 (-)
AMCG00016049 NA other downstream 3760408 3886298 ~ 3920503 (-)
AMCG00016046 NA other downstream 4138375 3528842 ~ 3542536 (-)
G10478 NA other downstream 4645728 3034422 ~ 3035183 (-)
AMCG00016029 NA other downstream 4834554 2784125 ~ 2846357 (-)
AMCG00016119 NA other upstream 365784 8119221 ~ 8124033 (-)
G11326 NA other upstream 438109 8191546 ~ 8194432 (-)
AMCG00016134 NA other upstream 1070108 8823545 ~ 8827760 (-)
AMCG00016176 NA other upstream 3080975 10834412 ~ 10847811 (-)
AMCG00016194 NA other upstream 4012715 11766152 ~ 11781547 (-)

Expression


Co-expression Network