AMCG00016119


Basic Information

Item Value
gene id AMCG00016119
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 8119221 ~ 8124033 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016119
TGCATATAATAACACATTTCGGGAGGTAGTCGGAGCTCTTGCGTGAAGCTGCCTCCTTGTTTGTTATGGTCGCGTTTCAGGAAGTGACCCCGACAAGGGACGACCAGCCGTGCGCAGTTTCATAAACGATCagcatgtttttataattataaattgcATAAGGTACTGTGaagacaattaaatatattggatCTCTGTCGTTTCTACGTCTGATGATTCTGTTTGAATGAATGCATCGAGACTACAACGTGGACTAGTGGTACTACTACCTACTGTAGTGCAGTAAGTTACAATGAATTAGACTGCTTTCGTTTGCACCACTAAATAACCTCACACTGCCTTTCCCGTCAAGTATGACCGACGAAGACAGTGCTGCCGCCAGTTTTAACACGGACGCAAACATCTCGGTCCTGCTCACTAAAGATGGCCAGACGTACTTGCTGGAGAACAGCGGCGGCGGCGCGGCGGGGGGCAGGTCCAGCGTGGTCACCCCGCAGGAGCCCGACAGCGTGCTGCTGTACGAGATCGGCGCGGACCCCGGAGAGGACAGCGATGTGCTGGACACGTCGGACCCGCGGGACAGCACGGCCAGCCCCGAGGACCTGGGCGACGAGGAGGCCTTCGGAGACAGCGACAGCGTGACCAAGACGTGCACCTACGAGGGCTGCGCCGAGACCACCACGCAGGTGGCCAAGCAGAGGAAGCCGTGGATGTGCAAGAAGCACCGGAATAAGATGTACAAGGACAAgtacaagaagaagaagagcgACCAGGCCATGTCTACTGGGAAACTGGACTCTGGGAGATCGCCCTGCAAGGCCTACACTGTTAGAACAAGTGCTAAACCAGAAGAGACTGTCACTTCTGAGAAGTCCAGAGGTTATCAGCTTTTTGCAGCAACAGCAGAGGTTACTAACGAACCAGGCACAAGCACCGACACAACTAGACTATTAAGTAGAAGCAGCTGAAGAAAAAGGTCATATTTTATGTGTCTGAAAAGCTTTGCAAGATAAAagagaaagtgtttttcttGGCAACTAGTTTCAGCTAGAGAAACTAAAGTGATTGGGCTCGAACTGTCAGTGACAAGCAGTACATTAATGTAGTGCAGACAGGAGCTATTTCTCACGTAGCTTGGAGCACAGGAGTTTCACACGAGAGCAGTGCATCAGTTACAACAACAGGAGAATGGGTGTTTGTCTGGAAAGGATCAATATGTTGCTGCCATCTGAAATTCAATGCTTATTTGTAAAAATGGGcccttttgtgtttaattagcATGAACAGGAACCTTATCAATCTGATTCAAGTGAATAAGCCTTCCTAATATAACAAAGCTTATTTAAAACTCACTGTAACAGCAACAGTTACAAACAGTGAGTTTAAGatataaatattaacatatgaagatataaataaaatctcttcTGGATTGTAAATGATTTGTTGAATGAAGACTAggacaaattgtatttaaaatcccCCCTAACATTTCTATTTGCATTTTGCCCACTTTAGACTCTGAAGAACCAtcaaattgcttaattgtgtctGAATCAAAGTAATTAAACTTTACTGTGCAGCCAGTACAGAATGATTTACCAGCAGTGTTATTAGTcttcattttacaaaacagtttaatgatCTATGTTTGTATCCAAACATCAGTGTGGTTTAGGCCAGACAGGAAGATACACAAGGTGTATTTATGAAGGATTTTTTGCATTCtaatgttaaaatgaataactgtgtggatttctttttttaagcaatggctattaatattttttaggaCATCCTTTTCataaaatgacatgttttgcaCTTGTAATACTATTGATATTGGAAGCAGGAACTGTCTGTTTTAAGTCttgattttaacttttttttactgaggtatttaaaatctatttaaattttacctggagaaaaaaatcatatcaaATGTATGGTACTTAGAGAGTTGACCTGTTTTGTCacaatattgtttcaaatgaaccatggtgtgttttaatgtatgactgacttaaattacaattaatttgattcatGATAACTGAAACTGCTAgtaagtttgtttgcatttccataatcaaattagtaattagGAATATAGTATTTAAAGAACTAAGGTTTGTGAAAGCTGAAACAGGTAGGTGTTTTGTGAAGTTTAcggatttattcatttttttttttaaaggagtacGGTTGAAATGCATGTCTTTAAAATCATGCTTTGTCGCATTGATGAGTGTTATTTGCATGTCTGTGGGTTGGAGATGTattgtgattaaaatgtaatttgatttcattttcatgctGTTTCCCTTGGTTTCTATATAGCTTTCATTATCGAAAGGTAACCCCC
>TU13990
TTCAGGAAGTGACCCCGACAAGGGACGACCAGCCGTGCGCAGTTTCATAAACGATCagcatgtttttataattataaattgcATAAGGTACTGTGaagacaattaaatatattggatCTCTGTCGTTTCTACGTCTGATGATTCTGTTTGAATGAATGCATCGAGACTACAACGTGGACTAGTGGTACTACTACCTACTGTAGTGCAgaAAGTGCAGAAGAGAGGCCAGTTTCTGTTACCAAGCAGCGGTTGGGCAGTCTGGGAGATCGCCCTGCAAGGCCTACACTGTTAGAACAAGTGCTAAACCAGAAGAGACTGTCACTTCTGAGAAGTCCAGAGGTTATCAGCTTTTTGCAGCAACAGCAGAGGTTACTAACGAACCAGGCACAAGCACCGACACAACTAGACTATTAAGTAGAAGCAGCTGAAGAAAAAGGTCATATTTTATGTGTCTGAAAAGCTTTGCAAGATAAAagagaaagtgtttttcttGGCAACTAGTTTCAGCTAGAGAAACTAAAGTGATTGGGCTCGAACTGTCAGTGACAAGCAGTACATTAATGTAGTGCAGACAGGAGCTATTTCTCACGTAGCTTGGAGCACAGGAGTTTCACACGAGAGCAGTGCATCAGTTACAACAACAGGAGAATGGGTGTTTGTCTGGAAAGGATCAATATGTTGCTGCCATCTGAAATTCAATGCTTATTTGTAAAAATGGGcccttttgtgtttaattagcATGAACAGGAACCTTATCAATCTGATTCAAGTGAATAAGCCTTCCTAATATAACAAAGCTTATTTAAAACTCACTGTAACAGCAACAGTTACAAACAGTGAGTTTAAGatataaatattaacatatgaagatataaataaaatctcttcTGGATTGTAAATGATTTGTTGAATGAAGACTAggacaaattgtatttaaaatcccCCCTAACATTTCTATTTGCATTTTGCCCACTTTAGACTCTGAAGAACCAtcaaattgcttaattgtgtctGAATCAAAGTAATTAAACTTTACTGTGCAGCCAGTACAGAATGATTTACCAGCAGTGTTATTAGTcttcattttacaaaacagtttaatgatCTATGTTTGTATCCAAACATCAGTGTGGTTTAGGCCAGACAGGAAGATACACAAGGTGTATTTATGAAGGATTTTTTGCATTCtaatgttaaaatgaataactgtgtggatttctttttttaagcaatggctattaatattttttaggaCATCCTTTTCataaaatgacatgttttgcaCTTGTAATACTATTGATATTGGAAGCAGGAACTGTCTGTTTTAAGTCttgattttaacttttttttactgaggtatttaaaatctatttaaattttacctggagaaaaaaatcatatcaaATGTATGGTACTTAGAGAGTTGACCTGTTTTGTCacaatattgtttcaaatgaaccatggtgtgttttaatgtatgactgacttaaattacaattaatttgattcatGATAACTGAAACTGCTAgtaagtttgtttgcatttccataatcaaattagtaattagGAATATAGTATTTAAAGAACTAAGGTTTGTGAAAGCTGAAACAGGTAGGTGTTTTGTGAAGTTTAcggatttattcatttttttttttaaaggagtacGGTTGAAATGCATGTCTTTAAAATCATGCTTTGTCGCATTGATGAGTGTTATTTGCATGTCTGTGGGTTGGAGATGTattgtgattaaaatgtaatttgatttcattttc

Function

GO: NA

KEGG:

id description
K08063 RFXAP; regulatory factor X-associated protein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016119 True 2368 mRNA 0.40 3 8119221 8124033
TU13990 False 1776 lncRNA 0.42 3 8119273 8123958

Neighbor

gene id symbol gene type direction distance location
AMCG00016111 NA coding downstream 84469 8030925 ~ 8034752 (-)
AMCG00016107 frem2b,LOC106581006,LOC106612873,LOC108433801 coding downstream 502923 7608507 ~ 7616298 (-)
AMCG00016108 LOC107730863,LOC107704782,LOC103363427,LOC101479746,LOC102203644 coding downstream 544741 7529911 ~ 7574480 (-)
AMCG00016105 NA coding downstream 592967 7520166 ~ 7526254 (-)
AMCG00016106 NA coding downstream 611126 7473851 ~ 7508095 (-)
AMCG00016118 NA coding upstream 14701 8138734 ~ 8139063 (-)
AMCG00016125 NA coding upstream 231646 8355679 ~ 8357486 (-)
AMCG00016127 NA coding upstream 292217 8416250 ~ 8433185 (-)
AMCG00016129 LOC106612894,LOC102298628,LOC102206684,LOC101482631 coding upstream 311087 8435120 ~ 8494583 (-)
AMCG00016130 nbeaa,nbea,LOC107691681,LOC107588988 coding upstream 470057 8594090 ~ 8644348 (-)
G11288 NA non-coding downstream 24017 8093800 ~ 8095204 (-)
G11247 NA non-coding downstream 151916 7967071 ~ 7967305 (-)
G11243 NA non-coding downstream 246452 7872417 ~ 7872769 (-)
G11216 NA non-coding downstream 498368 7620640 ~ 7620853 (-)
G11215 NA non-coding downstream 499224 7619698 ~ 7619997 (-)
G11300 NA non-coding upstream 957 8124990 ~ 8125383 (-)
G11309 NA non-coding upstream 12381 8136414 ~ 8138670 (-)
G11314 NA non-coding upstream 49656 8173689 ~ 8173974 (-)
G11345 NA non-coding upstream 196664 8320697 ~ 8321042 (-)
G11346 NA non-coding upstream 202149 8326182 ~ 8331803 (-)
AMCG00016110 ufm1,LOC107701138 other downstream 365784 7680911 ~ 7753437 (-)
AMCG00016074 NA other downstream 3189321 4903856 ~ 4929900 (-)
AMCG00016049 NA other downstream 4198718 3886298 ~ 3920503 (-)
AMCG00016046 NA other downstream 4576685 3528842 ~ 3542536 (-)
G10478 NA other downstream 5084038 3034422 ~ 3035183 (-)
G11326 NA other upstream 67513 8191546 ~ 8194432 (-)
AMCG00016134 NA other upstream 699512 8823545 ~ 8827760 (-)
AMCG00016176 NA other upstream 2710379 10834412 ~ 10847811 (-)
AMCG00016194 NA other upstream 3642119 11766152 ~ 11781547 (-)
AMCG00016203 zdhhc20,LOC108438268,LOC106578454,LOC108256609 other upstream 3708395 11832428 ~ 11947322 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_002267 rfxap coding NC_007121.7 CM002894.2 34958583 ~ 34961758 (+)