AMCG00019767 (fars2,LOC103399687)


Basic Information

Item Value
gene id AMCG00019767
gene name fars2,LOC103399687
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 43702543 ~ 43705085 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019767
ATGAGGCTGTATGGTGGTGTGGGGCCAATCGCCCGGCTGGTTCAGGCCACGGCGCTCCGCAGAGGCCGATGGGAAGCTCCCACCCAGGCTGCCCACAGAAGGGTGACGTCGGGGCCTGCCCCCAGCTCCAGCGGCCAGGAATGCGCGGAGCTGTTCGGGACAATCCACCAGCGGGATGACTACACCAACGTGACGCCCAAAATCCTGTCCAAGGTGGGCAAGGACCTTCACAATCGGCAGCACCACCCGTTGTGGCTCATCAAGGAGCGCATCAAAGCCCACTTCTACCAGCAGTACACAGGGCGCTTTGGGACCCCCCTGTTCTCAGTCTACGACAACCTGTGCCCTGTGGTGACGGTGGAGCAGAACTTCGACAGCCTCCTGATACCTGCCGACCACCCCAGCCGCAAGAAGGGGGACAACTACTACCTCAACCGGGGCCACATGCTGAGGGCGCACACCTCTGCCCACCAGAGGGACCTGGTGCACTCCGGCCTAGACGCCTTTCTGGTGGCGGGGGACGTCTACCGCAGAGATGAGATCGACGCCAGTCACTACCCTGTCTTCCACCAGATGGAGGGAGTGCGGCTCTTCTCCAACCATGAGCTGTTTGCCAGCGTTGTGAACGGAGGGGAGCTGCGTCTGTTCGAGAGGGGCCCCCGCACCCCGGAGAAGCAGGAGACCCACACGCTCGAGGCCGTCAAGCTGGTGGAGTTCAACCTCAAACAGACTGTCCGCAAACTCATCACTCAGCTGTTTGGGACAGATCTGGAAATTCGCTGGGTGGACTGTTATTTCCCATTCACGCACCCTTCCTTTGAGATGGAGATCAAGTTCCAGGGAGACTGGCTGGAGGTCCTGGGTTGTGGAGTGATGGAGCAGGAGCTGGTGAACTCAGGTATTGACCATTGA

Function

symbol description
fars2 Predicted to enable phenylalanine-tRNA ligase activity. Predicted to be involved in phenylalanyl-tRNA aminoacylation. Predicted to act upstream of or within tRNA aminoacylation and translation. Predicted to be located in mitochondrial matrix. Predicted to be active in mitochondrion. Human ortholog(s) of this gene implicated in combined oxidative phosphorylation deficiency 14 and hereditary spastic paraplegia 77. Orthologous to human FARS2 (phenylalanyl-tRNA synthetase 2, mitochondrial).

NR:

description
PREDICTED: phenylalanine--tRNA ligase, mitochondrial

GO: NA

KEGG:

id description
K01889 FARSA, pheS; phenylalanyl-tRNA synthetase alpha chain

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019767 True 912 mRNA 0.61 3 43702543 43705085

Neighbor

gene id symbol gene type direction distance location
AMCG00019766 NA coding upstream 136504 43565086 ~ 43566039 (+)
AMCG00019764 cdyl,LOC107689409 coding upstream 150238 43527447 ~ 43552305 (+)
AMCG00019759 NA coding upstream 334266 43363001 ~ 43368277 (+)
AMCG00019762 NA coding upstream 399567 43299078 ~ 43302976 (+)
AMCG00019753 NA coding upstream 962204 42717933 ~ 42740339 (+)
AMCG00019770 NA coding downstream 243950 43949035 ~ 43964268 (+)
AMCG00019773 rreb1 coding downstream 309425 44014510 ~ 44044675 (+)
AMCG00019775 riok1,LOC107589821,LOC107689403 coding downstream 355440 44060525 ~ 44070657 (+)
AMCG00019784 NA coding downstream 561156 44266241 ~ 44269213 (+)
AMCG00019780 mllt10,LOC107595146,LOC107549202,LOC107695408 coding downstream 571766 44276851 ~ 44332148 (+)
G37011 NA non-coding upstream 125286 43576248 ~ 43577257 (+)
G37000 NA non-coding upstream 151995 43459446 ~ 43550548 (+)
G36936 NA non-coding upstream 469897 43232356 ~ 43232646 (+)
G36910 NA non-coding upstream 752121 42950206 ~ 42950422 (+)
G36895 NA non-coding upstream 833909 42868402 ~ 42868634 (+)
G37068 LOC103376870 non-coding downstream 209107 43914192 ~ 43914819 (+)
G37070 NA non-coding downstream 229018 43934103 ~ 43934319 (+)
G37102 NA non-coding downstream 341244 44046329 ~ 44051431 (+)
G37132 NA non-coding downstream 531129 44236214 ~ 44288369 (+)
G37135 NA non-coding downstream 623934 44329019 ~ 44334697 (+)
G36954 NA other upstream 369230 43330292 ~ 43333313 (+)
AMCG00019758 NA other upstream 431351 43261894 ~ 43271192 (+)
AMCG00019755 NA other upstream 739885 42960656 ~ 42962658 (+)
AMCG00019751 NA other upstream 1075438 42624730 ~ 42627105 (+)
AMCG00019747 tubb6,LOC108431516,LOC100711323,LOC107688430 other upstream 1130463 42556540 ~ 42572080 (+)
G37105 ssr1 other downstream 347989 44053074 ~ 44056603 (+)
AMCG00019785 NA other downstream 730837 44435922 ~ 44443756 (+)
G37372 sugct,LOC107687505 other downstream 1574370 45279455 ~ 45569937 (+)
G37561 LOC100136012 other downstream 3085942 46791027 ~ 46791485 (+)
AMCG00019820 efr3a other downstream 3917683 47622768 ~ 47658001 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_023230 fars2 coding NC_007135.7 CM002908.2 2557794 ~ 2736809 (-)