AMCG00020797 (dpysl2b,LOC107678023,LOC107560521,LOC108427246)


Basic Information

Item Value
gene id AMCG00020797
gene name dpysl2b,LOC107678023,LOC107560521,LOC108427246
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 33881738 ~ 33894537 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020797
ATGGCCTGTGTGAGTGACCGGCTCTTGATCAAAGGCGGTAAAATTGTCAATGATGACCAGTCTTTCTACGCTGACATCTACATGGAAGATGGCCTCATCAAACAAATCGGCGAGAACCTGATCGTCCCTGGGGGGGTGAAGACCATCGATGCCCACGGACGCATGGTGATCCCTGGTGGCATCGATGTGCACACGCGCTTCCAGATGCCCGACCGGGGCATGACTGCTGCCGACGACTTCTACCAGGGCACCCGGGCAGCGCTGGCGGGGGGCACCACTATGATCATGGACCACGTGGTGCCGGAGCCAGGCGTCAGTCTGGTGTCTGCGTTCGAGCAGTGGCGTGAGTGGGCCGACAACAAGTCCTGCTGCGACTACTCCCTGCACGTGGACATCACTGAGTGGCACAAGGGCGTCCAGGAGGAGATGGAGGCGCTGGTTAAAGACCACGGTGTCAACTCTTTCCTGGTCTACATGGCCTACAAGGATGTGTTCCAGCTCACCGATTCCCAGatctaCGAGGTGTTCAGTGTGATCCGGGACTTGGGCGCCATCGCGCAGGTTCACGCAGAAAACGGAGACATCATTGCTGAGGAGCAGCGTCGGATCCTGGACTTGGGTATCACGGGACCGGAGGGCCACGTGCTGAGTCGTCCTGAGGAGACCAACTGCCCCCTGTACATCACCAAGGTGATGAGCAAAAGTGCGGCCGATGTCATCGCACTGGCCCGGAAGAAAGGAACCGTGCTTTATGGGGAGCCCATCTCGGCCAGCCTGGGCACCGACGGCTCTCACTACTGGAGCAAAAACTGGGCCAAAGCTGCTGCCTTCATCACGTCCCCACCGCTGAGCACTGACCCCACCACCCCAGACTATCTCAACTCCCTGCTGTCCTGCGGGGACCTGCAGGTGACTGGCAGCGCCCACTGCACTTTCAACACTGCCCAGCGTGCCGTGGGCAAGGACAACTTCACGCTGATCCCGGAGGGAACCAACGGCACCGAGGAGAGGCTCTCCCTCATCTGGGACAAGTCTGTGGTGACGGGCAAGATGGACGAGAACCAGTTTGTCGCTGTGACCAGCACCAACGCCGCTAAGATCTTCAACCTATACCCACGCAAGGGGCGCATTGCCGTGGGCTCCGACGCTGACCTCGTGCTCTGGGACCCAGACTCGGTCAAGATCATCTCCGCCAAGAACCACAACCTGGCAGTGGAGTACAACATCTTCGAGGGGACGGAGGTGCGCGGGGCCCCGCTGGTGGTGATCAGTCAGGGCAAGATCGTGCTGGAGGAGGGGACCCTGCACACCACGGAGGGCACGGGCCGCTACATCCCGCGCAAGCCCTTCCCCGACTACGTGTACAAGAGGATAAAGGCCCGCAGCAGGCTGGCGGAGCTGCGAGGCGTCCCCCGCGGGCTATACGATGGGCCGGTGTGTGAAGTCTCCGTGACCCCGAAAACTGCCACCCCCGCCTCCTCGGCCAAGACCTCCCCTGCCAAACAGCCACGTAGAAGGCTTTTTGCCTGAGCCCAGGTCGACGACAACATCCCCCGACGCACCACTCAGCGCATTGTGGCCCCTCCTGGCGGGCGAGCTAATATCACCAGCCTGGGATAAGCTCTCCGATCGGCTGCCTGGGGGGGTCAGGAGGCGGGTCACGGCCCGGAGTCCACGCCACCACTTGAGCTGAGCCCGAGACGGTCCCTGCAAGACGGCCGACTCAGCTACTCCCCTCACCCCCTCTCGCCCTCTCCCTCAACCCCTCCCCCGCAACCCACCATGGAGACACCAACCTCAAATTAAAATTGGTtgcctctttaaaaaaaaaaagaaaaacaaaaaaaaagaaacacacactccATGTCAGAGCACTCCAGACTGtattatttagtgttttatactgtattatccTGCCATGCaccattgttgttttgtttgttttataaaaggaAGAGTCAAGTGAATTGAGACTGAGCTGCATCTGTTTTTGTTACACAACATGAgggatgtttttttatgattgttcttgttattaataataataatcctttgtTGGTCTCTTGAGAGTCCGTATTTTATTCTGGGGAGAGAATGATACCCAAGAGCCgtcttatttattgatattgCTACATCAAAGCTGATGAAGTTTGTCTTTTGACCCTTTAAATTATCTTGTTTTCTACTGACCGCAGGCTAACGTGCCAAGGCTCAGAGGGCCGCTTCTTCACTGTACCGGTCAGCCCTTTATCATAGCGTCTCAGCCAGGGAGCACGAAAGCCAACAACCTTACTCACTAGAGAGCGATGGTTTACACTAAGCAGGCTTTGGCTTCAAATGAAATGGGTTTGGTCGGATCGTATGCGATTATGAccattttttatctttattcttGGAGAAGCTGCATCAGAACTGCCTTCTGGTGTTTGGGACGAGTCAGAGGTCACTCCCATCAATGCTAACGAGTACAGAACCTGCTCTCTCGCACAAATACAGCTGTGTCTTTGCCcttgtgctttttttcccctgcaaaTGACCATGAATGTGGTTACTGATGGTAGGAATGGCACACGGGTCTCGTGGTATGATGACCAGGCCGTGATGGGATGGATTGAGGCCACCTCGATTCATGCCAGCTGCTTCAGGGGGTAGCTTTGTGTCAAAGACAGTTTAGTTAACGTAAAGCtaaaagggaaagaaaggatTTGGGACATTTAAACATGGACAGAATTTTTAATAGGTTAAATAAGAAACCTTGAATACCTAGTCTCATTTTCAAGGTATTACACTAACACAAttgtcagattttatttattcgtGTTTTTCTCTTCTATACTGCTTCTGTACAAGAAAATCCTCTCAAATATTATACGTCTGTGTTTAATGTCTCACCAGTgtaatggttatttattttttaatgagtcCTCGAGGGAATTGAAGTTTACGCTTGTGGGGGTCTGGTTGGCTGGAGAAACCTCTTGAACAAATGGGCTTCAGTGAGCAGCGCTCTGAGTTTTACAAGGACTGGAATATTGTGGTGCTGCACACTGGCCGATTTTACACCTCTCGTTTCACTTCATAGAGGGCCGTAAATGTCAGCACCGCTCAAGCGATTTTGAACCATCTGTTTCTTATTAAGTACAGCCGTGCGACTGGCTTGATAGTGGGGGAAATTTGGATCTAGTATGTAGGAAGGACTTAAGTGGAGATAAACTGAAAAtctattaaaactattttaagtCTTAATGCTTCGTTTCGTATTTGACACGgatggttgttttttaatctactTAAATACATCCTGGTGAAAGGTATATCTGATTTGGAAGCAGAAGACGTCTGAAAGTGCTCTGCTACTAATGTCTTACAGGGACTGGTCTTTCTCAATGCCTGAGGACTGtgcaaatacattgtgaaacaaaagtgaTAGACATATCAGTGAGAGTGTAAGCcctgtttgagagagagagattgtgtgtggtgtggtggCCAACTGAACCAGATTTCTAGTTCCACTGTGTTGTCCGAGCCTGTTTtacagtattattgttttttctgttgctggAAATGGTTGAAATGTCAGGTTCCCACTAGCTCATGCACCCTGGTTTACAATCTTTAAGGCTTTCTGTAACACAGCTCAGCGGTCTATCAATAATTCACTTCGGTCTTCCTTTTCTCTTTGCATTGATGCAgtcggttttatttttttctttagttttttaccctcctgatatttttttatttaaaccttttaatcgtgttgctgttgttgttgttactttgtttgtttgttttaagggAACAAAATGTCATACTGAAACCCAGAATTAGTATATTGGCTGTTAGCATGAGTCTCCTATTCGCTTGTTTGGTGTTTGAATGCGCAAAGCAAAAAAGGGGTGGGCAACACGGGGTTAAAAAAGTGATTCTTATCCCTTTATTCTCATTGCTGTAagcctgtttttttaaagcgTGTACAATACATTTTGGCAGAGGGGAGGGTTGTGTTCTCCTGAGACTAAAAGTATTTTGCTTGCTTTTCCatccccccctcttcctctttgGCTATCCAGCTGTTGTAGCAACAAGGTTGCCCGGGCGACAGCCTTCAGTATCCATGGCCTGGCTCTTTGTTTGTCATGACAACAGGGTTGGCTCAGAAGTTGCCTTAGCAACAATTCTGGACCTGGTGCTATTAGAATAACATTGCATTGGGAGAGTTTTTGCCCTTTTCTTTACCGTATCAGAGCCACCGCTGTGATTTCCGAGCCCATACAGTAGGTCTCCGGCTGCCGCCTGCTCCTATGCAGGGTTTTGAGAACTGCAGCttgatttagctttttttgGGCACTTCTACAAGTCTCATTTTTTCAGTAATCTCTTGCTAGTGTGGTGGCAGTGAGGAGTTATGCTATTGTACTGATCcctgtcaatttattttctgatgaCAGACAAATGAGCTTTTTCTACTTATTACATGgttcttattttacttttctcccCGCTTGCTCTGTGCTCTGGGGGATCACTGTTCACTTGCCTGTCTCTGCCCCCACCCCACCAGCCCCCATAGTGccgagaagaagaaaaaataccagTGAATGGCACCTCTTAAAGGACCGCTTTGTGTCGCTGGCGTTTCCCTGTTACTGTTTGTCCCGTGGGTTTCTTGACTGTTGTTTTCTGGAGTGGTGGTTCCTGTGATGTCCAAGCCAGTTCTGCGCTTCTGAGTCTGTGGCCTGTTGATGGTTTTCACCCATCTGTAAGGATGTTGTAATGGAACGAAGAGCAAGAAAGAAGTGTCGATCTGACGTGCCCATGGCTGCAGTATTTCTGCTGTCAAGCTTATTGTAACACTAATGAGCAGTCCTGCGTCCCGGTACCATTCTTTACTGTACGTTTTTACAATCTATTGCTCTCCTGCAAGACCAGAAAATAACCAATCTGAGCAAAATGAATAAGagaattaaaatgacagtaaaGAAACGGGCGGAGCACATAGCAGCAGGATATCAATCCAGTAACGGGAGAACACGAGGTCCAAGACTATCCTTTTCCACCCCCGTCCATCCACCTCCTTCTACTGGTCTGATCTGACTTTTCTAAAATGCAAGTCTGTGTTGTGAGCAAAACAGCACAGATTGAGAGAGCAGCACAGTCTTCTCGATGTCGGTTTTCTGTTTTGgttctttcattcttttcttttttttgccattgtaaaagtgaaaatgttgatGGTGTATGTTCGTAGGCTATGGGTTTGAGGATGCTTGTCTCGCTGGAAAGAATTCCATTgatggttaattaaaaaaaagattaaaaaatattttaaaaaacgaTAAATGCCTTCCAattcatttcttttaaatatgatgatattattattgtgttctaTCTAACATGAGACCTGGTAATAAAGCCCGGTGTTGTTTCAGTG

Function

symbol description
dpysl2b Predicted to enable hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds and microtubule binding activity. Acts upstream of or within axon regeneration and axonogenesis. Located in cytosol. Is expressed in nervous system; neural plate; otic vesicle; spinal cord neural tube; and trigeminal placode. Orthologous to human DPYSL2 (dihydropyrimidinase like 2).

NR:

description
dihydropyrimidinase-related protein 2 isoform X1

GO:

id name namespace
GO:0031103 axon regeneration biological_process
GO:0006208 pyrimidine nucleobase catabolic process biological_process
GO:0005829 cytosol cellular_component
GO:0016812 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides molecular_function

KEGG:

id description
K07528 DPYSL2, CRMP2; dihydropyrimidinase-like 2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020797 True 5440 mRNA 0.48 15 33881738 33894537

Neighbor

gene id symbol gene type direction distance location
AMCG00020795 LOC107720674,LOC107687791,LOC108427248,LOC107561399,LOC103036208,LOC100689723,LOC102791612,LOC101471601 coding upstream 37220 33841870 ~ 33844518 (+)
AMCG00020794 ppp2r2a,ppp2r2ab,LOC106585558 coding upstream 46285 33819061 ~ 33835453 (+)
AMCG00020793 LOC108413329,LOC107552197,LOC107671041 coding upstream 221188 33656626 ~ 33660550 (+)
AMCG00020791 NA coding upstream 702052 33163415 ~ 33179686 (+)
AMCG00020789 NA coding upstream 957975 32917620 ~ 32923763 (+)
AMCG00020801 NA coding downstream 73655 33968192 ~ 33990813 (+)
AMCG00020802 NA coding downstream 104940 33999477 ~ 34006803 (+)
AMCG00020799 NA coding downstream 120750 34015287 ~ 34019959 (+)
AMCG00020800 NA coding downstream 138653 34033190 ~ 34040263 (+)
AMCG00020806 NA coding downstream 256943 34151480 ~ 34155511 (+)
G65670 NA non-coding upstream 999620 32879099 ~ 32882118 (+)
G65594 NA non-coding upstream 1195418 32629723 ~ 32686320 (+)
G65579 NA non-coding upstream 1296024 32563430 ~ 32585714 (+)
G65534 NA non-coding upstream 1437094 32443881 ~ 32444644 (+)
G65503 NA non-coding upstream 1574019 32307438 ~ 32307719 (+)
G65829 NA non-coding downstream 155457 34049994 ~ 34051037 (+)
G65831 NA non-coding downstream 167615 34062152 ~ 34062595 (+)
G65873 NA non-coding downstream 327809 34222346 ~ 34261929 (+)
G65877 NA non-coding downstream 345352 34239889 ~ 34267100 (+)
G65891 NA non-coding downstream 522058 34416595 ~ 34480123 (+)
G65705 NA other upstream 773312 33107873 ~ 33108426 (+)
G65691 NA other upstream 892293 32946731 ~ 32989445 (+)
AMCG00020783 dock5,LOC106585561 other upstream 1137003 32707933 ~ 32744735 (+)
G65590 NA other upstream 1287284 32592482 ~ 32594454 (+)
AMCG00020748 NA other upstream 1600903 32274286 ~ 32280835 (+)
AMCG00020796 tmem230a,LOC106565272,LOC106579885 other downstream 60269 33954806 ~ 33960582 (+)
G65830 tet3,LOC106906237 other downstream 164574 34059111 ~ 34059465 (+)
AMCG00020820 NA other downstream 509997 34404534 ~ 34411620 (+)
G66008 NA other downstream 889675 34784212 ~ 34787474 (+)
G66060 NA other downstream 1073307 34967844 ~ 35008322 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000087_01440256_01448260 DPYSL4 coding CI01000087 null 1440256 ~ 1448260 (+)